Wall clock time and date at job start Sat Apr 11 2020 06:06:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.87036 * 2 1 4 4 C 1.54420 * 110.00675 * 238.90716 * 2 1 3 5 5 H 1.09009 * 110.72749 * 336.66062 * 4 2 1 6 6 N 1.46503 * 110.76287 * 99.96389 * 4 2 1 7 7 C 1.34773 * 120.00145 * 199.94079 * 6 4 2 8 8 O 1.21685 * 120.00326 * 355.47448 * 7 6 4 9 9 C 1.46707 * 119.99733 * 175.47291 * 7 6 4 10 10 C 1.36702 * 126.85622 * 1.72923 * 9 7 6 11 11 N 1.33317 * 107.83751 * 179.87212 * 10 9 7 12 12 C 1.30868 * 109.74230 * 0.40758 * 11 10 9 13 13 N 1.34742 * 109.13543 * 359.74743 * 12 11 10 14 14 C 1.40110 * 126.50508 * 179.97438 * 13 12 11 15 15 C 1.38854 * 120.06598 * 123.50794 * 14 13 12 16 16 C 1.38118 * 119.92867 * 179.76257 * 15 14 13 17 17 C 1.38274 * 120.07080 * 0.49541 * 16 15 14 18 18 C 1.38289 * 120.13438 * 359.76085 * 17 16 15 19 19 C 1.38108 * 120.06449 * 359.97438 * 18 17 16 20 20 C 1.55151 * 102.89651 * 218.32177 * 4 2 1 21 21 C 1.54917 * 101.61539 * 35.49966 * 20 4 2 22 22 N 1.47021 * 109.88003 * 121.01385 * 2 1 3 23 23 C 1.36944 * 125.64767 * 298.47164 * 22 2 1 24 24 H 1.07999 * 119.99935 * 0.02562 * 23 22 2 25 25 C 1.38805 * 119.99825 * 180.02562 * 23 22 2 26 26 N 1.31625 * 120.00292 * 0.02562 * 25 23 22 27 27 Si 1.86805 * 119.99991 * 180.02562 * 25 23 22 28 28 H 1.48495 * 109.47080 * 89.99837 * 27 25 23 29 29 H 1.48503 * 109.47227 * 210.00067 * 27 25 23 30 30 H 1.48504 * 109.46928 * 329.99800 * 27 25 23 31 31 H 1.09009 * 109.47283 * 300.44094 * 1 2 3 32 32 H 1.09004 * 109.47144 * 60.44106 * 1 2 3 33 33 H 1.08999 * 109.47011 * 180.44239 * 1 2 3 34 34 H 0.96996 * 119.99617 * 19.94174 * 6 4 2 35 35 H 1.08001 * 126.08005 * 359.97438 * 10 9 7 36 36 H 1.07992 * 125.43722 * 179.72648 * 12 11 10 37 37 H 1.07998 * 120.03456 * 359.97438 * 15 14 13 38 38 H 1.07998 * 119.96304 * 180.22964 * 16 15 14 39 39 H 1.07999 * 119.93553 * 179.74144 * 17 16 15 40 40 H 1.08000 * 119.96413 * 179.97438 * 18 17 16 41 41 H 1.08000 * 120.03208 * 179.97438 * 19 18 17 42 42 H 1.09004 * 111.00346 * 277.40810 * 20 4 2 43 43 H 1.08998 * 111.00663 * 153.59455 * 20 4 2 44 44 H 1.08997 * 110.36413 * 81.80948 * 21 20 4 45 45 H 1.09000 * 110.36659 * 204.13504 * 21 20 4 46 46 H 0.97001 * 119.99723 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0584 -0.7493 -1.2425 5 1 1.3107 -1.4478 -1.6187 6 7 2.4588 0.1959 -2.2878 7 6 2.5623 -0.2174 -3.5664 8 8 2.4039 -1.3922 -3.8409 9 6 2.8660 0.7493 -4.6274 10 6 3.1017 2.0872 -4.4748 11 7 3.3391 2.6003 -5.6821 12 6 3.2569 1.6583 -6.5868 13 7 2.9650 0.4899 -5.9826 14 6 2.7936 -0.7520 -6.6082 15 6 3.5679 -1.8381 -6.2222 16 6 3.3932 -3.0623 -6.8375 17 6 2.4556 -3.2044 -7.8438 18 6 1.6867 -2.1233 -8.2340 19 6 1.8529 -0.8980 -7.6188 20 6 3.2917 -1.5108 -0.6893 21 6 2.8175 -1.8762 0.7395 22 7 2.0300 -0.7124 1.1849 23 6 1.8025 -0.3537 2.4868 24 1 1.2096 0.5210 2.7102 25 6 2.3339 -1.1142 3.5192 26 7 3.0569 -2.1798 3.2470 27 14 2.0230 -0.6253 5.2952 28 1 0.7838 -1.2842 5.7803 29 1 3.1716 -1.0518 6.1344 30 1 1.8665 0.8489 5.3826 31 1 -0.3634 0.5207 0.8861 32 1 -0.3634 0.5070 -0.8939 33 1 -0.3633 -1.0276 0.0079 34 1 2.6493 1.1191 -2.0595 35 1 3.0979 2.6313 -3.5419 36 1 3.3998 1.7955 -7.6484 37 1 4.3036 -1.7265 -5.4395 38 1 3.9926 -3.9083 -6.5352 39 1 2.3238 -4.1616 -8.3262 40 1 0.9554 -2.2374 -9.0206 41 1 1.2523 -0.0540 -7.9243 42 1 4.1681 -0.8635 -0.6564 43 1 3.4927 -2.4074 -1.2755 44 1 2.1936 -2.7696 0.7152 45 1 3.6741 -2.0284 1.3962 46 1 3.4279 -2.7115 3.9685 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088622966.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:32 Heat of formation + Delta-G solvation = 73.909828 kcal Electronic energy + Delta-G solvation = -29238.515357 eV Core-core repulsion = 25322.526646 eV Total energy + Delta-G solvation = -3915.988712 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.53546 -40.79494 -39.99701 -39.05155 -35.77936 -35.06071 -33.91310 -32.14630 -32.04903 -31.41490 -30.42847 -29.99021 -26.66481 -25.85904 -24.71473 -23.97956 -23.60409 -22.30784 -21.96673 -21.52289 -20.89389 -19.61808 -18.70440 -17.81110 -17.42865 -17.12541 -17.03733 -16.63832 -16.07486 -15.81376 -15.69278 -15.56008 -15.08828 -15.05578 -14.87458 -14.53770 -14.46627 -14.29580 -14.00592 -13.81240 -13.71240 -13.24088 -12.93236 -12.76027 -12.66752 -12.59354 -12.29553 -12.23327 -12.13627 -11.97331 -11.71586 -11.57494 -11.46262 -11.21907 -10.95615 -10.72812 -10.18977 -9.97161 -9.80326 -9.60410 -8.89761 -7.74253 -5.19323 -0.16955 0.34068 0.45199 1.34350 1.49287 1.50401 1.58936 1.74551 2.16194 2.24492 2.52801 2.68584 3.36346 3.42443 3.59992 3.73851 3.82762 3.83829 3.89519 3.94446 3.95714 4.17579 4.18454 4.23475 4.40810 4.45611 4.49492 4.61177 4.64851 4.69601 4.79083 4.84629 4.93711 4.97634 5.03854 5.10661 5.28936 5.34275 5.36207 5.40258 5.48508 5.50643 5.58442 5.60035 5.79678 5.80205 6.17080 6.30867 6.43506 6.74670 7.11158 7.11767 7.79305 8.42584 9.27685 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.018614 B = 0.002623 C = 0.002435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1503.915204 B =10672.702011 C =11494.328163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.152 3.848 3 H 0.055 0.945 4 C 0.160 3.840 5 H 0.080 0.920 6 N -0.691 5.691 7 C 0.590 3.410 8 O -0.567 6.567 9 C -0.104 4.104 10 C 0.051 3.949 11 N -0.515 5.515 12 C 0.227 3.773 13 N -0.386 5.386 14 C 0.086 3.914 15 C -0.088 4.088 16 C -0.120 4.120 17 C -0.105 4.105 18 C -0.110 4.110 19 C -0.112 4.112 20 C -0.137 4.137 21 C 0.159 3.841 22 N -0.613 5.613 23 C -0.225 4.225 24 H 0.086 0.914 25 C -0.069 4.069 26 N -0.951 5.951 27 Si 0.978 3.022 28 H -0.290 1.290 29 H -0.297 1.297 30 H -0.267 1.267 31 H 0.049 0.951 32 H 0.070 0.930 33 H 0.035 0.965 34 H 0.414 0.586 35 H 0.204 0.796 36 H 0.250 0.750 37 H 0.102 0.898 38 H 0.140 0.860 39 H 0.157 0.843 40 H 0.163 0.837 41 H 0.146 0.854 42 H 0.068 0.932 43 H 0.064 0.936 44 H -0.015 1.015 45 H 0.077 0.923 46 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.993 4.490 -26.218 26.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.045 3.955 3 H 0.072 0.928 4 C 0.055 3.945 5 H 0.098 0.902 6 N -0.342 5.342 7 C 0.377 3.623 8 O -0.446 6.446 9 C -0.219 4.219 10 C -0.103 4.103 11 N -0.232 5.232 12 C -0.053 4.053 13 N -0.063 5.063 14 C -0.004 4.004 15 C -0.107 4.107 16 C -0.138 4.138 17 C -0.123 4.123 18 C -0.128 4.128 19 C -0.131 4.131 20 C -0.176 4.176 21 C 0.033 3.967 22 N -0.339 5.339 23 C -0.354 4.354 24 H 0.104 0.896 25 C -0.261 4.261 26 N -0.601 5.601 27 Si 0.806 3.194 28 H -0.218 1.218 29 H -0.224 1.224 30 H -0.191 1.191 31 H 0.068 0.932 32 H 0.089 0.911 33 H 0.054 0.946 34 H 0.251 0.749 35 H 0.221 0.779 36 H 0.266 0.734 37 H 0.120 0.880 38 H 0.158 0.842 39 H 0.174 0.826 40 H 0.181 0.819 41 H 0.163 0.837 42 H 0.086 0.914 43 H 0.083 0.917 44 H 0.003 0.997 45 H 0.095 0.905 46 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -0.917 4.313 -26.406 26.772 hybrid contribution -0.054 -0.659 1.836 1.951 sum -0.971 3.654 -24.570 24.860 Atomic orbital electron populations 1.22130 0.96415 1.00756 1.01312 1.21199 0.93565 0.95172 0.85585 0.92768 1.21723 0.96144 0.90499 0.86136 0.90163 1.45470 1.68923 1.14397 1.05448 1.16961 0.76628 0.86577 0.82144 1.90831 1.52114 1.18593 1.83097 1.20810 1.19525 0.96751 0.84767 1.23112 0.99592 0.89489 0.98066 1.70250 1.21704 1.31339 0.99919 1.26062 0.99247 0.78423 1.01595 1.42811 1.49725 1.08334 1.05447 1.17844 1.00412 0.83942 0.98204 1.20991 0.98252 0.93212 0.98255 1.21298 0.99529 0.96407 0.96601 1.21673 0.94305 1.00403 0.95909 1.21419 0.99797 0.91267 1.00307 1.21299 0.96014 1.00121 0.95620 1.23182 0.97594 0.99911 0.96955 1.21657 0.95677 0.87820 0.91532 1.44717 1.59568 1.28728 1.00854 1.19396 1.26173 1.08174 0.81666 0.89580 1.25604 1.00832 0.97789 1.01899 1.70045 1.40280 1.19156 1.30653 0.85082 0.76460 0.78050 0.79766 1.21755 1.22353 1.19128 0.93216 0.91077 0.94556 0.74879 0.77912 0.73415 0.87963 0.84222 0.82584 0.81937 0.83671 0.91366 0.91723 0.99674 0.90488 0.94484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.17 9.15 71.98 0.66 -4.51 16 2 C 0.15 5.81 3.47 45.38 0.16 5.97 16 3 H 0.05 1.93 7.69 -2.39 -0.02 1.91 16 4 C 0.16 5.65 2.73 46.21 0.13 5.78 16 5 H 0.08 3.07 7.49 -2.38 -0.02 3.05 16 6 N -0.69 -19.47 5.19 -440.69 -2.29 -21.75 16 7 C 0.59 17.80 7.76 86.46 0.67 18.47 16 8 O -0.57 -20.59 13.73 -4.30 -0.06 -20.65 16 9 C -0.10 -2.67 6.79 39.97 0.27 -2.40 16 10 C 0.05 1.11 11.37 84.11 0.96 2.07 16 11 N -0.51 -11.41 11.20 -199.35 -2.23 -13.64 16 12 C 0.23 4.17 12.31 180.25 2.22 6.39 16 13 N -0.39 -8.76 2.85 -339.43 -0.97 -9.73 16 14 C 0.09 1.90 5.34 38.11 0.20 2.11 16 15 C -0.09 -2.12 7.78 22.39 0.17 -1.94 16 16 C -0.12 -2.30 10.04 22.25 0.22 -2.07 16 17 C -0.11 -1.49 10.04 22.29 0.22 -1.26 16 18 C -0.11 -1.42 10.04 22.25 0.22 -1.20 16 19 C -0.11 -1.83 9.78 22.38 0.22 -1.61 16 20 C -0.14 -5.44 6.76 31.99 0.22 -5.23 16 21 C 0.16 7.94 5.89 86.86 0.51 8.45 16 22 N -0.61 -30.41 3.13 -668.08 -2.09 -32.50 16 23 C -0.23 -12.14 9.87 84.03 0.83 -11.31 16 24 H 0.09 4.39 7.83 -2.91 -0.02 4.37 16 25 C -0.07 -3.86 5.49 84.86 0.47 -3.39 16 26 N -0.95 -56.52 10.09 21.65 0.22 -56.30 16 27 Si 0.98 45.17 29.55 68.60 2.03 47.19 16 28 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 29 H -0.30 -13.90 7.11 99.48 0.71 -13.19 16 30 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 31 H 0.05 1.80 8.02 -2.38 -0.02 1.78 16 32 H 0.07 2.04 8.14 -2.38 -0.02 2.02 16 33 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 34 H 0.41 9.29 7.25 -92.71 -0.67 8.62 16 35 H 0.20 3.27 7.45 -2.91 -0.02 3.24 16 36 H 0.25 2.26 8.06 -2.91 -0.02 2.24 16 37 H 0.10 2.87 7.79 -2.91 -0.02 2.85 16 38 H 0.14 2.26 8.06 -2.91 -0.02 2.24 16 39 H 0.16 1.27 8.06 -2.91 -0.02 1.25 16 40 H 0.16 1.04 8.06 -2.91 -0.02 1.01 16 41 H 0.15 1.78 8.06 -2.91 -0.02 1.76 16 42 H 0.07 2.63 8.14 -2.39 -0.02 2.61 16 43 H 0.06 2.54 8.14 -2.39 -0.02 2.52 16 44 H -0.01 -0.80 8.14 -2.39 -0.02 -0.82 16 45 H 0.08 4.37 5.87 -2.39 -0.01 4.36 16 46 H 0.25 14.26 8.31 -92.71 -0.77 13.49 16 Total: -1.00 -73.20 380.38 3.29 -69.91 By element: Atomic # 1 Polarization: 22.84 SS G_CDS: 0.33 Total: 23.17 kcal Atomic # 6 Polarization: 5.95 SS G_CDS: 8.35 Total: 14.30 kcal Atomic # 7 Polarization: -126.57 SS G_CDS: -7.36 Total: -133.92 kcal Atomic # 8 Polarization: -20.59 SS G_CDS: -0.06 Total: -20.65 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 2.03 Total: 47.19 kcal Total: -73.20 3.29 -69.91 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088622966.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.820 kcal (2) G-P(sol) polarization free energy of solvation -73.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.911 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds