Wall clock time and date at job start Sat Apr 11 2020 06:06:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.99661 * 2 1 4 4 C 1.54314 * 109.88548 * 238.90244 * 2 1 3 5 5 H 1.09005 * 110.72418 * 336.92539 * 4 2 1 6 6 N 1.46500 * 110.72699 * 100.02593 * 4 2 1 7 7 C 1.34769 * 120.00353 * 202.56187 * 6 4 2 8 8 O 1.21576 * 120.00218 * 359.97438 * 7 6 4 9 9 C 1.47661 * 120.00067 * 179.97438 * 7 6 4 10 10 C 1.39706 * 120.08158 * 179.97438 * 9 7 6 11 11 C 1.37725 * 119.92268 * 179.97438 * 10 9 7 12 12 C 1.39039 * 120.07825 * 0.28182 * 11 10 9 13 13 N 1.39859 * 119.92014 * 179.69749 * 12 11 10 14 14 C 1.37162 * 126.48286 * 179.97438 * 13 12 11 15 15 C 1.34628 * 106.82891 * 180.02562 * 14 13 12 16 16 N 1.34151 * 108.21251 * 359.97438 * 15 14 13 17 17 C 1.30484 * 109.36956 * 359.72515 * 16 15 14 18 18 C 1.39047 * 120.15566 * 359.44065 * 12 11 10 19 19 C 1.37721 * 120.08482 * 0.55811 * 18 12 11 20 20 C 1.55165 * 103.10315 * 218.47625 * 4 2 1 21 21 C 1.54910 * 101.57879 * 35.41148 * 20 4 2 22 22 N 1.47317 * 110.06427 * 121.16325 * 2 1 3 23 23 C 1.36938 * 125.61949 * 298.25424 * 22 2 1 24 24 H 1.08002 * 119.99983 * 359.83156 * 23 22 2 25 25 C 1.38810 * 120.00285 * 179.83378 * 23 22 2 26 26 N 1.31621 * 120.00103 * 359.97438 * 25 23 22 27 27 Si 1.86798 * 120.00056 * 180.02562 * 25 23 22 28 28 H 1.48504 * 109.47241 * 89.99826 * 27 25 23 29 29 H 1.48504 * 109.47124 * 209.99795 * 27 25 23 30 30 H 1.48503 * 109.46873 * 329.99645 * 27 25 23 31 31 H 1.08998 * 109.46559 * 181.10077 * 1 2 3 32 32 H 1.08994 * 109.47590 * 301.09893 * 1 2 3 33 33 H 1.09003 * 109.46897 * 61.10468 * 1 2 3 34 34 H 0.97003 * 119.99335 * 22.55687 * 6 4 2 35 35 H 1.07999 * 120.03872 * 0.02562 * 10 9 7 36 36 H 1.08002 * 119.95894 * 179.97438 * 11 10 9 37 37 H 1.07997 * 126.58888 * 359.97438 * 14 13 12 38 38 H 1.07999 * 125.89035 * 180.02562 * 15 14 13 39 39 H 1.07996 * 125.72443 * 180.29512 * 17 16 15 40 40 H 1.08010 * 119.95689 * 180.25871 * 18 12 11 41 41 H 1.07999 * 120.04105 * 179.74899 * 19 18 12 42 42 H 1.08995 * 111.00433 * 153.48331 * 20 4 2 43 43 H 1.08993 * 111.00441 * 277.34101 * 20 4 2 44 44 H 1.09007 * 110.36735 * 81.83072 * 21 20 4 45 45 H 1.08997 * 110.37005 * 204.15167 * 21 20 4 46 46 H 0.97002 * 120.00356 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0549 -0.7495 -1.2426 5 1 1.3041 -1.4438 -1.6200 6 7 2.4556 0.1959 -2.2875 7 6 2.5057 -0.2028 -3.5739 8 8 2.2188 -1.3472 -3.8672 9 6 2.9090 0.7504 -4.6271 10 6 2.9620 0.3387 -5.9611 11 6 3.3381 1.2306 -6.9408 12 6 3.6705 2.5377 -6.6029 13 7 4.0580 3.4389 -7.5998 14 6 4.4119 4.7518 -7.4196 15 6 4.7102 5.2456 -8.6360 16 7 4.5456 4.2663 -9.5379 17 6 4.1613 3.1778 -8.9296 18 6 3.6133 2.9525 -5.2770 19 6 3.2381 2.0662 -4.2920 20 6 3.2871 -1.5177 -0.6956 21 6 2.8162 -1.8829 0.7343 22 7 2.0354 -0.7161 1.1841 23 6 1.8141 -0.3582 2.4872 24 1 1.2260 0.5188 2.7139 25 6 2.3455 -1.1226 3.5168 26 7 3.0618 -2.1918 3.2406 27 14 2.0429 -0.6349 5.2944 28 1 0.8023 -1.2888 5.7829 29 1 3.1923 -1.0678 6.1291 30 1 1.8935 0.8399 5.3844 31 1 -0.3632 -1.0275 0.0197 32 1 -0.3634 0.5308 0.8799 33 1 -0.3633 0.4966 -0.8998 34 1 2.6848 1.1090 -2.0534 35 1 2.7075 -0.6775 -6.2238 36 1 3.3796 0.9129 -7.9722 37 1 4.4441 5.2869 -6.4820 38 1 5.0280 6.2556 -8.8487 39 1 3.9567 2.2292 -9.4036 40 1 3.8682 3.9698 -5.0187 41 1 3.1978 2.3880 -3.2618 42 1 3.4812 -2.4144 -1.2840 43 1 4.1664 -0.8744 -0.6649 44 1 2.1881 -2.7735 0.7109 45 1 3.6743 -2.0399 1.3878 46 1 3.4329 -2.7262 3.9600 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088777111.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:50 Heat of formation + Delta-G solvation = 72.462886 kcal Electronic energy + Delta-G solvation = -28217.256831 eV Core-core repulsion = 24301.205376 eV Total energy + Delta-G solvation = -3916.051456 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.33256 -41.38618 -39.90045 -38.89596 -35.70549 -35.18543 -33.88216 -32.41197 -32.05559 -31.11424 -30.52176 -29.93121 -26.73054 -25.86693 -25.07592 -24.24635 -22.70249 -22.01737 -21.69079 -21.44421 -21.15759 -19.72224 -18.78676 -18.62405 -17.53467 -16.74487 -16.54557 -16.31744 -16.07187 -15.94971 -15.76337 -15.67100 -15.20605 -14.99786 -14.70150 -14.59361 -14.39995 -14.32344 -14.00140 -13.91648 -13.65913 -13.53219 -13.23557 -12.92392 -12.75906 -12.60518 -12.25815 -12.19192 -12.11325 -11.97129 -11.73450 -11.57155 -11.44825 -11.18937 -11.03791 -10.72666 -10.21588 -10.10477 -9.75663 -9.34797 -8.89334 -7.73938 -5.18835 -0.59547 0.20036 1.03412 1.49059 1.50388 1.58723 1.60612 1.86337 2.04075 2.10313 2.52601 2.75082 3.36562 3.48360 3.50734 3.63014 3.71134 3.74513 3.84966 3.89654 3.95666 4.08866 4.15063 4.20917 4.45952 4.50149 4.51391 4.60374 4.62325 4.67122 4.80966 4.83444 4.86051 4.92894 5.02732 5.05314 5.12413 5.21172 5.35138 5.35545 5.49677 5.51451 5.60812 5.61167 5.72097 5.81162 6.19559 6.31405 6.51143 6.95789 7.11939 7.16787 7.79654 8.43030 9.27833 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.024203 B = 0.001990 C = 0.001913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.588631 B =14069.518728 C =14632.969429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.151 3.849 3 H 0.056 0.944 4 C 0.152 3.848 5 H 0.081 0.919 6 N -0.698 5.698 7 C 0.557 3.443 8 O -0.578 6.578 9 C -0.151 4.151 10 C -0.039 4.039 11 C -0.138 4.138 12 C 0.152 3.848 13 N -0.417 5.417 14 C -0.050 4.050 15 C -0.044 4.044 16 N -0.522 5.522 17 C 0.184 3.816 18 C -0.136 4.136 19 C -0.051 4.051 20 C -0.138 4.138 21 C 0.157 3.843 22 N -0.614 5.614 23 C -0.224 4.224 24 H 0.087 0.913 25 C -0.071 4.071 26 N -0.951 5.951 27 Si 0.977 3.023 28 H -0.292 1.292 29 H -0.297 1.297 30 H -0.266 1.266 31 H 0.034 0.966 32 H 0.048 0.952 33 H 0.072 0.928 34 H 0.413 0.587 35 H 0.142 0.858 36 H 0.162 0.838 37 H 0.209 0.791 38 H 0.191 0.809 39 H 0.235 0.765 40 H 0.163 0.837 41 H 0.159 0.841 42 H 0.064 0.936 43 H 0.071 0.929 44 H -0.016 1.016 45 H 0.078 0.922 46 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.844 14.409 -21.633 26.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.044 3.956 3 H 0.074 0.926 4 C 0.047 3.953 5 H 0.099 0.901 6 N -0.349 5.349 7 C 0.346 3.654 8 O -0.459 6.459 9 C -0.155 4.155 10 C -0.059 4.059 11 C -0.157 4.157 12 C 0.058 3.942 13 N -0.096 5.096 14 C -0.179 4.179 15 C -0.188 4.188 16 N -0.240 5.240 17 C -0.097 4.097 18 C -0.155 4.155 19 C -0.070 4.070 20 C -0.178 4.178 21 C 0.031 3.969 22 N -0.339 5.339 23 C -0.353 4.353 24 H 0.104 0.896 25 C -0.263 4.263 26 N -0.601 5.601 27 Si 0.806 3.194 28 H -0.219 1.219 29 H -0.224 1.224 30 H -0.190 1.190 31 H 0.053 0.947 32 H 0.067 0.933 33 H 0.090 0.910 34 H 0.251 0.749 35 H 0.160 0.840 36 H 0.179 0.821 37 H 0.226 0.774 38 H 0.208 0.792 39 H 0.251 0.749 40 H 0.181 0.819 41 H 0.177 0.823 42 H 0.083 0.917 43 H 0.090 0.910 44 H 0.002 0.998 45 H 0.096 0.904 46 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 1.803 13.648 -22.416 26.306 hybrid contribution -0.208 -0.168 2.144 2.161 sum 1.595 13.481 -20.272 24.397 Atomic orbital electron populations 1.22131 0.96514 1.00742 1.01312 1.21259 0.93484 0.95195 0.85666 0.92592 1.21748 0.96272 0.90824 0.86502 0.90133 1.45761 1.68191 1.15310 1.05676 1.18572 0.76725 0.87287 0.82823 1.90772 1.50991 1.21272 1.82870 1.19948 1.06951 0.94758 0.93851 1.21186 0.93693 1.00342 0.90633 1.20975 1.02379 0.90756 1.01619 1.18192 0.98163 0.89560 0.88247 1.43347 1.48862 1.09824 1.07564 1.23347 1.07677 0.84145 1.02776 1.22820 1.06716 1.00446 0.88828 1.70325 1.18832 1.00525 1.34281 1.25908 1.03248 1.01062 0.79494 1.21054 1.02692 1.02075 0.89682 1.21410 0.93904 0.90733 1.00947 1.23196 0.97707 0.99976 0.96905 1.21675 0.95782 0.87780 0.91646 1.44799 1.59759 1.28480 1.00864 1.19391 1.26288 1.07899 0.81696 0.89562 1.25614 1.00990 0.97805 1.01917 1.70042 1.40534 1.18836 1.30695 0.85085 0.76400 0.78062 0.79821 1.21897 1.22414 1.19042 0.94668 0.93270 0.90964 0.74871 0.83992 0.82077 0.77416 0.79199 0.74896 0.81904 0.82328 0.91683 0.91023 0.99810 0.90432 0.94513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.01 9.15 71.98 0.66 -4.35 16 2 C 0.15 5.53 3.49 45.28 0.16 5.69 16 3 H 0.06 1.87 7.70 -2.39 -0.02 1.85 16 4 C 0.15 5.12 2.79 46.18 0.13 5.24 16 5 H 0.08 2.99 7.33 -2.38 -0.02 2.97 16 6 N -0.70 -17.50 5.14 -439.96 -2.26 -19.76 16 7 C 0.56 14.69 7.77 86.73 0.67 15.36 16 8 O -0.58 -20.07 16.02 -3.95 -0.06 -20.14 16 9 C -0.15 -2.83 5.88 -20.08 -0.12 -2.95 16 10 C -0.04 -0.65 9.58 22.50 0.22 -0.44 16 11 C -0.14 -1.69 9.45 22.34 0.21 -1.47 16 12 C 0.15 1.90 6.64 38.25 0.25 2.15 16 13 N -0.42 -5.48 2.98 -350.26 -1.04 -6.53 16 14 C -0.05 -0.58 10.85 83.03 0.90 0.32 16 15 C -0.04 -0.64 11.85 83.51 0.99 0.35 16 16 N -0.52 -9.88 11.24 -199.68 -2.25 -12.13 16 17 C 0.18 2.62 11.91 179.99 2.14 4.77 16 18 C -0.14 -1.42 9.45 22.34 0.21 -1.21 16 19 C -0.05 -0.64 9.53 22.50 0.21 -0.43 16 20 C -0.14 -5.28 6.77 31.99 0.22 -5.06 16 21 C 0.16 7.67 5.89 86.85 0.51 8.18 16 22 N -0.61 -29.66 3.14 -667.56 -2.10 -31.75 16 23 C -0.22 -11.82 9.91 84.03 0.83 -10.99 16 24 H 0.09 4.30 7.83 -2.91 -0.02 4.28 16 25 C -0.07 -3.91 5.49 84.86 0.47 -3.45 16 26 N -0.95 -55.80 10.09 21.65 0.22 -55.58 16 27 Si 0.98 44.49 29.55 68.60 2.03 46.51 16 28 H -0.29 -13.27 7.11 99.48 0.71 -12.57 16 29 H -0.30 -13.75 7.11 99.48 0.71 -13.04 16 30 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 31 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.05 1.71 8.06 -2.39 -0.02 1.69 16 33 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 34 H 0.41 7.64 6.36 -92.71 -0.59 7.05 16 35 H 0.14 2.51 7.64 -2.91 -0.02 2.49 16 36 H 0.16 1.11 6.75 -2.91 -0.02 1.09 16 37 H 0.21 0.93 7.13 -2.91 -0.02 0.91 16 38 H 0.19 1.87 8.06 -2.91 -0.02 1.85 16 39 H 0.23 1.68 7.05 -2.91 -0.02 1.66 16 40 H 0.16 0.83 6.79 -2.91 -0.02 0.81 16 41 H 0.16 1.29 6.39 -2.91 -0.02 1.27 16 42 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 43 H 0.07 2.59 8.14 -2.39 -0.02 2.58 16 44 H -0.02 -0.87 8.14 -2.38 -0.02 -0.89 16 45 H 0.08 4.32 5.87 -2.39 -0.01 4.30 16 46 H 0.25 14.09 8.31 -92.71 -0.77 13.32 16 Total: -1.00 -74.58 377.86 3.63 -70.95 By element: Atomic # 1 Polarization: 16.29 SS G_CDS: 0.43 Total: 16.71 kcal Atomic # 6 Polarization: 3.04 SS G_CDS: 8.67 Total: 11.71 kcal Atomic # 7 Polarization: -118.33 SS G_CDS: -7.43 Total: -125.75 kcal Atomic # 8 Polarization: -20.07 SS G_CDS: -0.06 Total: -20.14 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 2.03 Total: 46.51 kcal Total: -74.58 3.63 -70.95 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088777111.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.417 kcal (2) G-P(sol) polarization free energy of solvation -74.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.954 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds