Wall clock time and date at job start Sat Apr 11 2020 06:06:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.99738 * 2 1 4 4 C 1.54319 * 109.88740 * 238.90162 * 2 1 3 5 5 H 1.09003 * 110.72220 * 336.92847 * 4 2 1 6 6 N 1.46503 * 110.72472 * 100.02862 * 4 2 1 7 7 C 1.34775 * 120.00056 * 205.00317 * 6 4 2 8 8 O 1.21572 * 120.00185 * 359.97438 * 7 6 4 9 9 C 1.47601 * 119.99482 * 179.97438 * 7 6 4 10 10 C 1.39639 * 120.19570 * 354.56192 * 9 7 6 11 11 C 1.37846 * 119.91956 * 180.27856 * 10 9 7 12 12 C 1.38527 * 120.30773 * 359.72225 * 11 10 9 13 13 C 1.38084 * 120.38587 * 0.02562 * 12 11 10 14 14 C 1.38752 * 120.07958 * 0.02562 * 13 12 11 15 15 N 1.39696 * 120.15882 * 179.97438 * 14 13 12 16 16 C 1.35855 * 126.10503 * 278.99716 * 15 14 13 17 17 C 1.35288 * 107.61522 * 180.17554 * 16 15 14 18 18 C 1.39966 * 107.96152 * 359.57596 * 17 16 15 19 19 N 1.30817 * 108.37311 * 0.26198 * 18 17 16 20 20 C 1.55163 * 102.94344 * 218.38996 * 4 2 1 21 21 C 1.54906 * 101.57880 * 35.50239 * 20 4 2 22 22 N 1.47021 * 109.88101 * 121.08905 * 2 1 3 23 23 C 1.36933 * 125.65142 * 298.32818 * 22 2 1 24 24 H 1.08001 * 120.00181 * 359.97438 * 23 22 2 25 25 C 1.38818 * 120.00068 * 179.97438 * 23 22 2 26 26 N 1.31619 * 120.00002 * 359.97438 * 25 23 22 27 27 Si 1.86802 * 119.99759 * 179.97438 * 25 23 22 28 28 H 1.48499 * 109.46889 * 90.00269 * 27 25 23 29 29 H 1.48504 * 109.46989 * 210.00114 * 27 25 23 30 30 H 1.48495 * 109.47305 * 330.00213 * 27 25 23 31 31 H 1.08996 * 109.46711 * 181.09439 * 1 2 3 32 32 H 1.08997 * 109.47325 * 301.10309 * 1 2 3 33 33 H 1.09003 * 109.46651 * 61.09948 * 1 2 3 34 34 H 0.96998 * 119.99473 * 24.99837 * 6 4 2 35 35 H 1.08000 * 120.03729 * 0.02562 * 10 9 7 36 36 H 1.07993 * 119.85037 * 179.70526 * 11 10 9 37 37 H 1.07997 * 119.80718 * 179.97438 * 12 11 10 38 38 H 1.08004 * 119.96114 * 179.97438 * 13 12 11 39 39 H 1.08004 * 126.19386 * 0.02562 * 16 15 14 40 40 H 1.07998 * 126.01529 * 179.83977 * 17 16 15 41 41 H 1.08000 * 125.80625 * 180.23977 * 18 17 16 42 42 H 1.09004 * 111.00192 * 153.57341 * 20 4 2 43 43 H 1.08998 * 111.00255 * 277.42690 * 20 4 2 44 44 H 1.09004 * 110.36749 * 204.14932 * 21 20 4 45 45 H 1.09000 * 110.46357 * 81.87589 * 21 20 4 46 46 H 0.97003 * 119.99898 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0549 -0.7495 -1.2426 5 1 1.3041 -1.4438 -1.6200 6 7 2.4557 0.1960 -2.2875 7 6 2.4585 -0.1886 -3.5792 8 8 2.1289 -1.3201 -3.8773 9 6 2.8617 0.7643 -4.6319 10 6 3.1316 2.0956 -4.3082 11 6 3.5021 2.9820 -5.2967 12 6 3.6140 2.5572 -6.6105 13 6 3.3551 1.2425 -6.9439 14 6 2.9799 0.3369 -5.9619 15 7 2.7171 -0.9935 -6.2974 16 6 1.5598 -1.4729 -6.8232 17 6 1.7106 -2.8060 -6.9974 18 6 2.9993 -3.1533 -6.5759 19 7 3.6021 -2.0704 -6.1573 20 6 3.2878 -1.5142 -0.6921 21 6 2.8145 -1.8793 0.7370 22 7 2.0300 -0.7139 1.1840 23 6 1.8049 -0.3554 2.4863 24 1 1.2147 0.5207 2.7109 25 6 2.3352 -1.1182 3.5178 26 7 3.0540 -2.1863 3.2440 27 14 2.0286 -0.6287 5.2942 28 1 0.7879 -1.2835 5.7810 29 1 3.1770 -1.0594 6.1316 30 1 1.8774 0.8459 5.3823 31 1 -0.3632 -1.0275 0.0196 32 1 -0.3634 0.5308 0.8799 33 1 -0.3633 0.4967 -0.8997 34 1 2.7189 1.0987 -2.0495 35 1 3.0461 2.4313 -3.2853 36 1 3.7060 4.0124 -5.0459 37 1 3.9045 3.2586 -7.3786 38 1 3.4440 0.9188 -7.9705 39 1 0.6780 -0.8949 -7.0572 40 1 0.9688 -3.4823 -7.3958 41 1 3.4235 -4.1464 -6.5931 42 1 3.4853 -2.4111 -1.2793 43 1 4.1655 -0.8688 -0.6601 44 1 3.6716 -2.0337 1.3925 45 1 2.1891 -2.7718 0.7149 46 1 3.4249 -2.7191 3.9648 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088882165.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:57 Heat of formation + Delta-G solvation = 118.439037 kcal Electronic energy + Delta-G solvation = -29462.419280 eV Core-core repulsion = 25548.361500 eV Total energy + Delta-G solvation = -3914.057780 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.40424 -39.99616 -38.72496 -37.38670 -34.25362 -33.40491 -32.36086 -31.32202 -30.35853 -30.08388 -29.19347 -28.50795 -25.26158 -24.02954 -23.70635 -23.48024 -21.11163 -20.94672 -20.52627 -20.16522 -19.70707 -18.28097 -17.46135 -16.81328 -16.31190 -15.60638 -15.49144 -15.07406 -14.82039 -14.64725 -14.33031 -13.96378 -13.85690 -13.75596 -13.65218 -13.32830 -12.90898 -12.76311 -12.64283 -12.35046 -12.14471 -11.99408 -11.82867 -11.56451 -11.15116 -10.87679 -10.84808 -10.68175 -10.57509 -10.43453 -10.10669 -9.83765 -9.75748 -9.57922 -9.47308 -9.38957 -9.22189 -8.68923 -8.60140 -8.55249 -6.89052 -5.66465 -3.09665 0.40748 0.74306 1.95138 2.49336 2.75231 2.99037 3.21556 3.38657 3.43461 3.45579 3.52518 4.35187 4.42870 4.48545 4.56034 4.73096 4.89763 4.92143 4.99188 5.17199 5.25830 5.38886 5.41235 5.54129 5.60829 5.62327 5.75885 5.78699 5.80745 5.86642 5.93444 6.04776 6.10479 6.23499 6.24595 6.29627 6.33589 6.52383 6.58970 6.72508 6.74768 6.84717 7.09156 7.22024 7.51205 7.61065 7.67406 7.77209 7.84503 8.32393 8.36719 9.19176 9.80133 10.44133 11.36776 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.016888 B = 0.002825 C = 0.002579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1657.564180 B = 9907.870723 C =10855.503127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.156 3.844 3 H 0.035 0.965 4 C 0.138 3.862 5 H 0.094 0.906 6 N -0.709 5.709 7 C 0.549 3.451 8 O -0.515 6.515 9 C -0.112 4.112 10 C -0.081 4.081 11 C -0.112 4.112 12 C -0.090 4.090 13 C -0.112 4.112 14 C 0.192 3.808 15 N -0.327 5.327 16 C 0.071 3.929 17 C -0.263 4.263 18 C 0.048 3.952 19 N -0.269 5.269 20 C -0.152 4.152 21 C 0.153 3.847 22 N -0.595 5.595 23 C -0.222 4.222 24 H 0.077 0.923 25 C -0.010 4.010 26 N -0.920 5.920 27 Si 0.914 3.086 28 H -0.289 1.289 29 H -0.290 1.290 30 H -0.282 1.282 31 H 0.052 0.948 32 H 0.054 0.946 33 H 0.037 0.963 34 H 0.395 0.605 35 H 0.138 0.862 36 H 0.137 0.863 37 H 0.137 0.863 38 H 0.135 0.865 39 H 0.167 0.833 40 H 0.146 0.854 41 H 0.181 0.819 42 H 0.061 0.939 43 H 0.061 0.939 44 H 0.109 0.891 45 H 0.014 0.986 46 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.552 9.151 -22.778 24.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.047 3.953 3 H 0.052 0.948 4 C 0.033 3.967 5 H 0.112 0.888 6 N -0.360 5.360 7 C 0.335 3.665 8 O -0.391 6.391 9 C -0.117 4.117 10 C -0.100 4.100 11 C -0.130 4.130 12 C -0.109 4.109 13 C -0.132 4.132 14 C 0.101 3.899 15 N -0.105 5.105 16 C -0.072 4.072 17 C -0.293 4.293 18 C -0.140 4.140 19 N -0.087 5.087 20 C -0.191 4.191 21 C 0.028 3.972 22 N -0.320 5.320 23 C -0.350 4.350 24 H 0.095 0.905 25 C -0.205 4.205 26 N -0.568 5.568 27 Si 0.745 3.255 28 H -0.216 1.216 29 H -0.217 1.217 30 H -0.207 1.207 31 H 0.071 0.929 32 H 0.073 0.927 33 H 0.056 0.944 34 H 0.230 0.770 35 H 0.155 0.845 36 H 0.155 0.845 37 H 0.154 0.846 38 H 0.153 0.847 39 H 0.184 0.816 40 H 0.164 0.836 41 H 0.198 0.802 42 H 0.080 0.920 43 H 0.080 0.920 44 H 0.127 0.873 45 H 0.033 0.967 46 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 0.342 8.815 -22.216 23.903 hybrid contribution -0.933 0.277 0.816 1.270 sum -0.591 9.092 -21.399 23.258 Atomic orbital electron populations 1.22236 0.97872 1.01465 0.99846 1.20985 0.92595 0.94711 0.86967 0.94787 1.22168 0.97714 0.90673 0.86124 0.88821 1.45975 1.67993 1.16219 1.05858 1.17977 0.78822 0.87238 0.82507 1.90845 1.46794 1.19359 1.82072 1.20394 1.03057 0.94834 0.93405 1.21369 0.96740 0.91488 1.00415 1.21264 0.98847 1.00283 0.92638 1.21237 0.97791 0.94986 0.96905 1.21274 0.99312 0.93237 0.99331 1.17128 0.99915 0.81128 0.91727 1.45341 1.11100 1.04554 1.49490 1.22524 0.90613 0.95549 0.98479 1.21396 0.99139 0.94601 1.14116 1.23838 0.94170 0.97745 0.98221 1.77451 1.16060 0.93400 1.21783 1.23386 0.96668 0.99359 0.99723 1.21943 0.97359 0.88357 0.89491 1.44490 1.59247 1.28238 1.00040 1.19017 1.27280 1.08187 0.80496 0.90467 1.24796 1.00324 0.97367 0.98060 1.69800 1.39042 1.17794 1.30189 0.86081 0.77260 0.77703 0.84478 1.21633 1.21661 1.20722 0.92904 0.92685 0.94423 0.76963 0.84474 0.84524 0.84562 0.84736 0.81563 0.83610 0.80188 0.92028 0.92039 0.87330 0.96749 0.93666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.90 9.13 37.16 0.34 -2.56 16 2 C 0.16 3.14 3.48 -66.96 -0.23 2.91 16 3 H 0.03 0.66 7.72 -51.93 -0.40 0.26 16 4 C 0.14 2.58 2.85 -66.09 -0.19 2.39 16 5 H 0.09 1.91 7.25 -51.93 -0.38 1.53 16 6 N -0.71 -10.90 5.13 -53.05 -0.27 -11.17 16 7 C 0.55 8.89 7.75 -12.44 -0.10 8.79 16 8 O -0.51 -10.11 13.83 5.30 0.07 -10.03 16 9 C -0.11 -1.44 5.89 -104.82 -0.62 -2.06 16 10 C -0.08 -0.75 9.52 -39.20 -0.37 -1.12 16 11 C -0.11 -0.78 10.02 -39.62 -0.40 -1.18 16 12 C -0.09 -0.61 10.03 -39.53 -0.40 -1.01 16 13 C -0.11 -1.02 9.96 -39.45 -0.39 -1.41 16 14 C 0.19 2.43 6.05 -83.35 -0.50 1.93 16 15 N -0.33 -4.68 2.00 -10.37 -0.02 -4.70 16 16 C 0.07 0.89 11.03 -16.82 -0.19 0.70 16 17 C -0.26 -3.21 10.80 -39.99 -0.43 -3.64 16 18 C 0.05 0.65 12.02 -17.34 -0.21 0.45 16 19 N -0.27 -4.35 11.89 30.64 0.36 -3.98 16 20 C -0.15 -3.13 6.77 -24.58 -0.17 -3.30 16 21 C 0.15 3.80 5.89 -2.53 -0.01 3.79 16 22 N -0.59 -14.89 3.13 -162.57 -0.51 -15.40 16 23 C -0.22 -6.02 9.89 -15.06 -0.15 -6.17 16 24 H 0.08 2.02 7.83 -52.49 -0.41 1.61 16 25 C -0.01 -0.27 5.49 -17.43 -0.10 -0.37 16 26 N -0.92 -26.73 10.09 55.49 0.56 -26.17 16 27 Si 0.91 21.87 29.55 -169.99 -5.02 16.85 16 28 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 29 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 30 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 31 H 0.05 1.05 8.14 -51.93 -0.42 0.62 16 32 H 0.05 1.05 8.04 -51.93 -0.42 0.63 16 33 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.40 4.99 6.43 -40.82 -0.26 4.73 16 35 H 0.14 1.02 6.44 -52.49 -0.34 0.68 16 36 H 0.14 0.57 8.06 -52.49 -0.42 0.15 16 37 H 0.14 0.52 8.06 -52.49 -0.42 0.10 16 38 H 0.13 1.04 8.06 -52.48 -0.42 0.61 16 39 H 0.17 1.56 8.06 -52.48 -0.42 1.13 16 40 H 0.15 1.38 8.06 -52.49 -0.42 0.96 16 41 H 0.18 1.88 8.06 -52.49 -0.42 1.46 16 42 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 43 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 44 H 0.11 3.00 5.88 -51.93 -0.31 2.70 16 45 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 46 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 LS Contribution 380.45 15.07 5.73 5.73 Total: -1.00 -34.75 380.45 -9.50 -44.25 By element: Atomic # 1 Polarization: 12.79 SS G_CDS: -6.30 Total: 6.49 kcal Atomic # 6 Polarization: 2.25 SS G_CDS: -4.11 Total: -1.86 kcal Atomic # 7 Polarization: -61.56 SS G_CDS: 0.12 Total: -61.43 kcal Atomic # 8 Polarization: -10.11 SS G_CDS: 0.07 Total: -10.03 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -34.75 -9.50 -44.25 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088882165.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.690 kcal (2) G-P(sol) polarization free energy of solvation -34.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 127.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.250 kcal (6) G-S(sol) free energy of system = (1) + (5) 118.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds