Wall clock time and date at job start Sat Apr 11 2020 06:06:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.99738 * 2 1 4 4 C 1.54319 * 109.88740 * 238.90162 * 2 1 3 5 5 H 1.09003 * 110.72220 * 336.92847 * 4 2 1 6 6 N 1.46503 * 110.72472 * 100.02862 * 4 2 1 7 7 C 1.34775 * 120.00056 * 205.00317 * 6 4 2 8 8 O 1.21572 * 120.00185 * 359.97438 * 7 6 4 9 9 C 1.47601 * 119.99482 * 179.97438 * 7 6 4 10 10 C 1.39639 * 120.19570 * 354.56192 * 9 7 6 11 11 C 1.37846 * 119.91956 * 180.27856 * 10 9 7 12 12 C 1.38527 * 120.30773 * 359.72225 * 11 10 9 13 13 C 1.38084 * 120.38587 * 0.02562 * 12 11 10 14 14 C 1.38752 * 120.07958 * 0.02562 * 13 12 11 15 15 N 1.39696 * 120.15882 * 179.97438 * 14 13 12 16 16 C 1.35855 * 126.10503 * 278.99716 * 15 14 13 17 17 C 1.35288 * 107.61522 * 180.17554 * 16 15 14 18 18 C 1.39966 * 107.96152 * 359.57596 * 17 16 15 19 19 N 1.30817 * 108.37311 * 0.26198 * 18 17 16 20 20 C 1.55163 * 102.94344 * 218.38996 * 4 2 1 21 21 C 1.54906 * 101.57880 * 35.50239 * 20 4 2 22 22 N 1.47021 * 109.88101 * 121.08905 * 2 1 3 23 23 C 1.36933 * 125.65142 * 298.32818 * 22 2 1 24 24 H 1.08001 * 120.00181 * 359.97438 * 23 22 2 25 25 C 1.38818 * 120.00068 * 179.97438 * 23 22 2 26 26 N 1.31619 * 120.00002 * 359.97438 * 25 23 22 27 27 Si 1.86802 * 119.99759 * 179.97438 * 25 23 22 28 28 H 1.48499 * 109.46889 * 90.00269 * 27 25 23 29 29 H 1.48504 * 109.46989 * 210.00114 * 27 25 23 30 30 H 1.48495 * 109.47305 * 330.00213 * 27 25 23 31 31 H 1.08996 * 109.46711 * 181.09439 * 1 2 3 32 32 H 1.08997 * 109.47325 * 301.10309 * 1 2 3 33 33 H 1.09003 * 109.46651 * 61.09948 * 1 2 3 34 34 H 0.96998 * 119.99473 * 24.99837 * 6 4 2 35 35 H 1.08000 * 120.03729 * 0.02562 * 10 9 7 36 36 H 1.07993 * 119.85037 * 179.70526 * 11 10 9 37 37 H 1.07997 * 119.80718 * 179.97438 * 12 11 10 38 38 H 1.08004 * 119.96114 * 179.97438 * 13 12 11 39 39 H 1.08004 * 126.19386 * 0.02562 * 16 15 14 40 40 H 1.07998 * 126.01529 * 179.83977 * 17 16 15 41 41 H 1.08000 * 125.80625 * 180.23977 * 18 17 16 42 42 H 1.09004 * 111.00192 * 153.57341 * 20 4 2 43 43 H 1.08998 * 111.00255 * 277.42690 * 20 4 2 44 44 H 1.09004 * 110.36749 * 204.14932 * 21 20 4 45 45 H 1.09000 * 110.46357 * 81.87589 * 21 20 4 46 46 H 0.97003 * 119.99898 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0549 -0.7495 -1.2426 5 1 1.3041 -1.4438 -1.6200 6 7 2.4557 0.1960 -2.2875 7 6 2.4585 -0.1886 -3.5792 8 8 2.1289 -1.3201 -3.8773 9 6 2.8617 0.7643 -4.6319 10 6 3.1316 2.0956 -4.3082 11 6 3.5021 2.9820 -5.2967 12 6 3.6140 2.5572 -6.6105 13 6 3.3551 1.2425 -6.9439 14 6 2.9799 0.3369 -5.9619 15 7 2.7171 -0.9935 -6.2974 16 6 1.5598 -1.4729 -6.8232 17 6 1.7106 -2.8060 -6.9974 18 6 2.9993 -3.1533 -6.5759 19 7 3.6021 -2.0704 -6.1573 20 6 3.2878 -1.5142 -0.6921 21 6 2.8145 -1.8793 0.7370 22 7 2.0300 -0.7139 1.1840 23 6 1.8049 -0.3554 2.4863 24 1 1.2147 0.5207 2.7109 25 6 2.3352 -1.1182 3.5178 26 7 3.0540 -2.1863 3.2440 27 14 2.0286 -0.6287 5.2942 28 1 0.7879 -1.2835 5.7810 29 1 3.1770 -1.0594 6.1316 30 1 1.8774 0.8459 5.3823 31 1 -0.3632 -1.0275 0.0196 32 1 -0.3634 0.5308 0.8799 33 1 -0.3633 0.4967 -0.8997 34 1 2.7189 1.0987 -2.0495 35 1 3.0461 2.4313 -3.2853 36 1 3.7060 4.0124 -5.0459 37 1 3.9045 3.2586 -7.3786 38 1 3.4440 0.9188 -7.9705 39 1 0.6780 -0.8949 -7.0572 40 1 0.9688 -3.4823 -7.3958 41 1 3.4235 -4.1464 -6.5931 42 1 3.4853 -2.4111 -1.2793 43 1 4.1655 -0.8688 -0.6601 44 1 3.6716 -2.0337 1.3925 45 1 2.1891 -2.7718 0.7149 46 1 3.4249 -2.7191 3.9648 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088882165.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:56 Heat of formation + Delta-G solvation = 97.179983 kcal Electronic energy + Delta-G solvation = -29463.341142 eV Core-core repulsion = 25548.361500 eV Total energy + Delta-G solvation = -3914.979642 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.33353 -41.14521 -39.83734 -38.85433 -35.74634 -34.37629 -33.94831 -32.42540 -32.04104 -31.03113 -30.41796 -29.89573 -26.78591 -25.90468 -24.79749 -24.25426 -22.40272 -21.89796 -21.81942 -21.64351 -21.12709 -19.25090 -18.76034 -18.41455 -17.56860 -16.89659 -16.43277 -16.29913 -16.05338 -15.92246 -15.72497 -15.35173 -15.20769 -14.74306 -14.61704 -14.54365 -14.33248 -14.03764 -13.83698 -13.64919 -13.43259 -13.28084 -13.01874 -12.97074 -12.77239 -12.63335 -12.46981 -12.28559 -12.15626 -11.99287 -11.66506 -11.60870 -11.50206 -11.08459 -10.75318 -10.35293 -10.24317 -10.07528 -9.93765 -9.49223 -8.93148 -7.76171 -5.21936 -0.38214 0.08490 1.00563 1.47772 1.49694 1.58148 1.64733 1.79725 2.00147 2.02600 2.50889 2.65702 3.34485 3.45651 3.64337 3.68629 3.81135 3.89781 3.91584 4.01818 4.12016 4.13844 4.25750 4.29422 4.41608 4.43651 4.57137 4.61054 4.69994 4.75843 4.80319 4.88032 4.88208 4.98574 5.06977 5.12120 5.14579 5.22145 5.30620 5.32794 5.46803 5.55459 5.55930 5.66247 5.76134 5.83560 6.27254 6.35410 6.47517 6.79626 7.08577 7.15402 7.76338 8.40402 9.26054 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.016888 B = 0.002825 C = 0.002579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1657.564180 B = 9907.870723 C =10855.503127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.153 3.847 3 H 0.055 0.945 4 C 0.157 3.843 5 H 0.076 0.924 6 N -0.699 5.699 7 C 0.547 3.453 8 O -0.557 6.557 9 C -0.141 4.141 10 C -0.078 4.078 11 C -0.101 4.101 12 C -0.071 4.071 13 C -0.114 4.114 14 C 0.160 3.840 15 N -0.331 5.331 16 C 0.063 3.937 17 C -0.273 4.273 18 C 0.035 3.965 19 N -0.319 5.319 20 C -0.137 4.137 21 C 0.161 3.839 22 N -0.613 5.613 23 C -0.228 4.228 24 H 0.088 0.912 25 C -0.070 4.070 26 N -0.952 5.952 27 Si 0.980 3.020 28 H -0.290 1.290 29 H -0.297 1.297 30 H -0.264 1.264 31 H 0.033 0.967 32 H 0.051 0.949 33 H 0.069 0.931 34 H 0.411 0.589 35 H 0.154 0.846 36 H 0.176 0.824 37 H 0.176 0.824 38 H 0.145 0.855 39 H 0.193 0.807 40 H 0.169 0.831 41 H 0.199 0.801 42 H 0.056 0.944 43 H 0.068 0.932 44 H 0.078 0.922 45 H -0.017 1.017 46 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.948 13.070 -24.372 27.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.046 3.954 3 H 0.073 0.927 4 C 0.052 3.948 5 H 0.094 0.906 6 N -0.351 5.351 7 C 0.335 3.665 8 O -0.436 6.436 9 C -0.146 4.146 10 C -0.097 4.097 11 C -0.119 4.119 12 C -0.090 4.090 13 C -0.134 4.134 14 C 0.069 3.931 15 N -0.109 5.109 16 C -0.080 4.080 17 C -0.302 4.302 18 C -0.152 4.152 19 N -0.138 5.138 20 C -0.177 4.177 21 C 0.035 3.965 22 N -0.338 5.338 23 C -0.357 4.357 24 H 0.106 0.894 25 C -0.262 4.262 26 N -0.602 5.602 27 Si 0.809 3.191 28 H -0.218 1.218 29 H -0.223 1.223 30 H -0.189 1.189 31 H 0.052 0.948 32 H 0.070 0.930 33 H 0.088 0.912 34 H 0.249 0.751 35 H 0.172 0.828 36 H 0.193 0.807 37 H 0.194 0.806 38 H 0.162 0.838 39 H 0.210 0.790 40 H 0.187 0.813 41 H 0.216 0.784 42 H 0.075 0.925 43 H 0.087 0.913 44 H 0.096 0.904 45 H 0.001 0.999 46 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -0.061 12.799 -23.840 27.058 hybrid contribution -0.807 -0.855 1.203 1.682 sum -0.868 11.943 -22.638 25.610 Atomic orbital electron populations 1.22113 0.96436 1.00636 1.01282 1.21182 0.93565 0.95086 0.85561 0.92705 1.21673 0.95948 0.90727 0.86496 0.90623 1.45724 1.68018 1.16291 1.05100 1.18575 0.77628 0.87351 0.82977 1.90820 1.48655 1.21423 1.82695 1.20212 1.06349 0.95692 0.92369 1.21635 0.95903 0.90164 1.02041 1.21727 0.96693 1.01507 0.91960 1.21742 0.94971 0.94279 0.97964 1.21488 0.98959 0.93817 0.99110 1.17609 1.01821 0.81019 0.92633 1.45516 1.11148 1.04949 1.49272 1.23079 0.91017 0.96112 0.97816 1.21757 0.99140 0.95134 1.14124 1.24303 0.94960 0.98187 0.97768 1.77334 1.18076 0.94729 1.23677 1.23167 0.97773 0.99649 0.97123 1.21624 0.95720 0.87824 0.91315 1.44721 1.59691 1.28471 1.00942 1.19420 1.26496 1.08167 0.81569 0.89406 1.25651 1.00755 0.97676 1.02098 1.70053 1.40383 1.18995 1.30784 0.85043 0.76459 0.78135 0.79482 1.21751 1.22337 1.18905 0.94823 0.92994 0.91193 0.75079 0.82833 0.80699 0.80647 0.83761 0.78996 0.81317 0.78395 0.92541 0.91311 0.90408 0.99916 0.94450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.27 9.13 71.98 0.66 -4.61 16 2 C 0.15 6.04 3.48 45.34 0.16 6.19 16 3 H 0.06 1.98 7.72 -2.39 -0.02 1.97 16 4 C 0.16 5.90 2.85 46.18 0.13 6.04 16 5 H 0.08 3.16 7.25 -2.39 -0.02 3.14 16 6 N -0.70 -20.76 5.13 -440.01 -2.26 -23.02 16 7 C 0.55 17.57 7.75 86.71 0.67 18.25 16 8 O -0.56 -22.48 13.83 -3.94 -0.05 -22.53 16 9 C -0.14 -3.45 5.89 -19.99 -0.12 -3.57 16 10 C -0.08 -1.19 9.52 22.52 0.21 -0.97 16 11 C -0.10 -0.90 10.02 22.25 0.22 -0.67 16 12 C -0.07 -0.63 10.03 22.30 0.22 -0.41 16 13 C -0.11 -1.79 9.96 22.36 0.22 -1.57 16 14 C 0.16 3.90 6.05 38.49 0.23 4.13 16 15 N -0.33 -9.55 2.00 -186.72 -0.37 -9.93 16 16 C 0.06 1.56 11.03 83.39 0.92 2.48 16 17 C -0.27 -6.69 10.80 22.01 0.24 -6.45 16 18 C 0.03 0.97 12.02 85.26 1.02 2.00 16 19 N -0.32 -10.69 11.89 -56.97 -0.68 -11.37 16 20 C -0.14 -5.84 6.77 31.99 0.22 -5.62 16 21 C 0.16 8.34 5.89 86.85 0.51 8.85 16 22 N -0.61 -31.07 3.13 -668.26 -2.09 -33.16 16 23 C -0.23 -12.41 9.89 84.04 0.83 -11.58 16 24 H 0.09 4.50 7.83 -2.91 -0.02 4.47 16 25 C -0.07 -3.92 5.49 84.86 0.47 -3.46 16 26 N -0.95 -57.36 10.09 21.65 0.22 -57.15 16 27 Si 0.98 45.34 29.55 68.60 2.03 47.37 16 28 H -0.29 -13.37 7.11 99.48 0.71 -12.67 16 29 H -0.30 -13.91 7.11 99.48 0.71 -13.20 16 30 H -0.26 -11.37 7.11 99.48 0.71 -10.67 16 31 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 32 H 0.05 1.90 8.04 -2.39 -0.02 1.88 16 33 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 34 H 0.41 9.44 6.43 -92.71 -0.60 8.84 16 35 H 0.15 1.70 6.44 -2.91 -0.02 1.68 16 36 H 0.18 0.29 8.06 -2.91 -0.02 0.27 16 37 H 0.18 0.23 8.06 -2.91 -0.02 0.20 16 38 H 0.14 1.91 8.06 -2.91 -0.02 1.88 16 39 H 0.19 3.43 8.06 -2.91 -0.02 3.40 16 40 H 0.17 3.10 8.06 -2.91 -0.02 3.07 16 41 H 0.20 4.34 8.06 -2.91 -0.02 4.31 16 42 H 0.06 2.43 8.14 -2.38 -0.02 2.42 16 43 H 0.07 2.80 8.14 -2.39 -0.02 2.78 16 44 H 0.08 4.54 5.88 -2.39 -0.01 4.53 16 45 H -0.02 -0.98 8.14 -2.39 -0.02 -0.99 16 46 H 0.25 14.46 8.31 -92.71 -0.77 13.69 16 Total: -1.00 -80.40 380.45 4.03 -76.38 By element: Atomic # 1 Polarization: 23.96 SS G_CDS: 0.41 Total: 24.37 kcal Atomic # 6 Polarization: 2.21 SS G_CDS: 6.82 Total: 9.03 kcal Atomic # 7 Polarization: -129.43 SS G_CDS: -5.18 Total: -134.61 kcal Atomic # 8 Polarization: -22.48 SS G_CDS: -0.05 Total: -22.53 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 2.03 Total: 47.37 kcal Total: -80.40 4.03 -76.38 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088882165.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 173.556 kcal (2) G-P(sol) polarization free energy of solvation -80.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.376 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds