Wall clock time and date at job start Sat Apr 11 2020 06:07:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08998 * 109.99992 * 2 1 4 4 C 1.54338 * 109.99305 * 238.96946 * 2 1 3 5 5 H 1.09007 * 110.51111 * 336.97303 * 4 2 1 6 6 N 1.46498 * 111.00560 * 100.12400 * 4 2 1 7 7 C 1.34771 * 120.00128 * 200.24129 * 6 4 2 8 8 O 1.21552 * 120.00010 * 359.97438 * 7 6 4 9 9 C 1.47863 * 120.00034 * 179.97438 * 7 6 4 10 10 C 1.39614 * 120.11059 * 359.97438 * 9 7 6 11 11 C 1.37979 * 119.98592 * 180.02562 * 10 9 7 12 12 C 1.38262 * 120.21875 * 359.97438 * 11 10 9 13 13 C 1.38914 * 120.22530 * 359.97438 * 12 11 10 14 14 N 1.40210 * 119.99477 * 180.02562 * 13 12 11 15 15 C 1.35219 * 126.05510 * 4.71561 * 14 13 12 16 16 C 1.35320 * 107.71635 * 179.87262 * 15 14 13 17 17 C 1.39922 * 107.93031 * 0.39065 * 16 15 14 18 18 N 1.30881 * 108.24221 * 359.75838 * 17 16 15 19 19 C 1.38603 * 120.01203 * 359.76812 * 13 12 11 20 20 C 1.55161 * 103.02156 * 218.66481 * 4 2 1 21 21 C 1.54907 * 101.58173 * 35.30375 * 20 4 2 22 22 N 1.47024 * 109.88790 * 121.09928 * 2 1 3 23 23 C 1.36932 * 125.64878 * 298.39735 * 22 2 1 24 24 H 1.08002 * 119.99770 * 342.78068 * 23 22 2 25 25 C 1.38810 * 120.00476 * 162.77334 * 23 22 2 26 26 N 1.31617 * 119.99714 * 332.10369 * 25 23 22 27 27 Si 1.86797 * 120.00373 * 152.09705 * 25 23 22 28 28 H 1.48493 * 109.47334 * 180.02562 * 27 25 23 29 29 H 1.48502 * 109.47093 * 300.00759 * 27 25 23 30 30 H 1.48501 * 109.46890 * 60.00322 * 27 25 23 31 31 H 1.09002 * 109.46941 * 300.35159 * 1 2 3 32 32 H 1.08997 * 109.47226 * 60.35637 * 1 2 3 33 33 H 1.09004 * 109.47080 * 180.35391 * 1 2 3 34 34 H 0.97000 * 119.99508 * 20.23223 * 6 4 2 35 35 H 1.07992 * 120.00741 * 0.02562 * 10 9 7 36 36 H 1.07996 * 119.89358 * 179.97438 * 11 10 9 37 37 H 1.08005 * 119.88885 * 180.02562 * 12 11 10 38 38 H 1.08004 * 126.13965 * 0.02562 * 15 14 13 39 39 H 1.07999 * 126.03753 * 180.14108 * 16 15 14 40 40 H 1.07999 * 125.87965 * 179.73895 * 17 16 15 41 41 H 1.07999 * 120.11070 * 180.27846 * 19 13 12 42 42 H 1.08998 * 111.00115 * 277.22783 * 20 4 2 43 43 H 1.09002 * 111.00432 * 153.38147 * 20 4 2 44 44 H 1.08997 * 110.36428 * 204.15469 * 21 20 4 45 45 H 1.09003 * 110.36892 * 81.82910 * 21 20 4 46 46 H 0.97004 * 120.00513 * 353.95988 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9027 1.0242 0.0000 4 6 2.0576 -0.7477 -1.2428 5 1 1.3052 -1.4405 -1.6198 6 7 2.4631 0.1940 -2.2893 7 6 2.5607 -0.2206 -3.5679 8 8 2.3128 -1.3760 -3.8528 9 6 2.9694 0.7300 -4.6242 10 6 3.2542 2.0577 -4.2996 11 6 3.6348 2.9426 -5.2874 12 6 3.7361 2.5192 -6.5997 13 6 3.4559 1.2000 -6.9325 14 7 3.5607 0.7757 -8.2647 15 6 4.0071 1.5175 -9.3034 16 6 3.9551 0.7452 -10.4134 17 6 3.4524 -0.5072 -10.0436 18 7 3.2158 -0.4899 -8.7565 19 6 3.0779 0.3017 -5.9469 20 6 3.2864 -1.5183 -0.6916 21 6 2.8100 -1.8826 0.7366 22 7 2.0301 -0.7141 1.1838 23 6 1.8040 -0.3566 2.4862 24 1 1.4640 0.6413 2.7209 25 6 2.0115 -1.2766 3.5046 26 7 1.8827 -2.5643 3.2645 27 14 2.4736 -0.6873 5.2159 28 1 2.6384 -1.8578 6.1148 29 1 3.7494 0.0699 5.1510 30 1 1.4009 0.1944 5.7422 31 1 -0.3633 0.5193 0.8868 32 1 -0.3633 0.5083 -0.8931 33 1 -0.3633 -1.0277 0.0063 34 1 2.6611 1.1159 -2.0618 35 1 3.1766 2.3919 -3.2757 36 1 3.8544 3.9694 -5.0348 37 1 4.0349 3.2164 -7.3686 38 1 4.3467 2.5416 -9.2553 39 1 4.2461 1.0441 -11.4096 40 1 3.2877 -1.3439 -10.7063 41 1 2.8641 -0.7254 -6.2032 42 1 4.1670 -0.8767 -0.6581 43 1 3.4808 -2.4154 -1.2794 44 1 3.6656 -2.0412 1.3929 45 1 2.1802 -2.7719 0.7112 46 1 1.5583 -2.8668 2.4018 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088921041.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:06 Heat of formation + Delta-G solvation = 103.651190 kcal Electronic energy + Delta-G solvation = -28375.766971 eV Core-core repulsion = 24461.067942 eV Total energy + Delta-G solvation = -3914.699029 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.73 seconds Orbital eigenvalues (eV) -41.89975 -40.33800 -38.85766 -37.60966 -34.45345 -33.84564 -32.23175 -31.68228 -30.62828 -30.49765 -29.41966 -28.39258 -25.45099 -24.17533 -23.81213 -23.56169 -21.87188 -21.01248 -20.51649 -20.28038 -19.79729 -18.71245 -17.33645 -16.93159 -16.64209 -16.18654 -15.67613 -15.32313 -15.09859 -14.87802 -14.29696 -14.22442 -14.14007 -13.90959 -13.82788 -13.42868 -13.18381 -13.07799 -12.98279 -12.83371 -12.32927 -11.94355 -11.90294 -11.75400 -11.32567 -11.06761 -10.87640 -10.74971 -10.73078 -10.55888 -10.39286 -10.07888 -10.01534 -9.90875 -9.56642 -9.52922 -9.48174 -8.81743 -8.49507 -8.43602 -6.98553 -6.10288 -3.16195 0.25717 0.64592 1.69805 1.95300 2.39564 2.73094 3.10165 3.48833 3.53099 3.55077 3.70945 4.05606 4.23293 4.38875 4.44960 4.57287 4.64926 4.66303 4.85888 4.95953 5.11244 5.19751 5.23644 5.29604 5.33933 5.41860 5.44860 5.52721 5.67547 5.75843 5.81187 5.88460 5.96318 6.05010 6.11636 6.15859 6.22390 6.23183 6.34131 6.48244 6.51505 6.73585 6.79842 6.94653 6.99956 7.05785 7.22898 7.54636 7.77483 8.21712 8.46729 9.00307 9.79751 10.34029 11.22151 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.028632 B = 0.002048 C = 0.001983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 977.685893 B =13668.061278 C =14118.553305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.155 3.845 3 H 0.037 0.963 4 C 0.136 3.864 5 H 0.095 0.905 6 N -0.708 5.708 7 C 0.555 3.445 8 O -0.531 6.531 9 C -0.102 4.102 10 C -0.095 4.095 11 C -0.097 4.097 12 C -0.120 4.120 13 C 0.150 3.850 14 N -0.323 5.323 15 C 0.051 3.949 16 C -0.262 4.262 17 C 0.054 3.946 18 N -0.284 5.284 19 C -0.061 4.061 20 C -0.145 4.145 21 C 0.145 3.855 22 N -0.593 5.593 23 C -0.334 4.334 24 H 0.065 0.935 25 C -0.025 4.025 26 N -0.915 5.915 27 Si 1.065 2.935 28 H -0.286 1.286 29 H -0.294 1.294 30 H -0.293 1.293 31 H 0.057 0.943 32 H 0.037 0.963 33 H 0.050 0.950 34 H 0.398 0.602 35 H 0.136 0.864 36 H 0.141 0.859 37 H 0.134 0.866 38 H 0.178 0.822 39 H 0.154 0.846 40 H 0.191 0.809 41 H 0.152 0.848 42 H 0.066 0.934 43 H 0.068 0.932 44 H 0.055 0.945 45 H 0.029 0.971 46 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.196 13.072 -25.257 28.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.048 3.952 3 H 0.055 0.945 4 C 0.031 3.969 5 H 0.113 0.887 6 N -0.358 5.358 7 C 0.341 3.659 8 O -0.408 6.408 9 C -0.106 4.106 10 C -0.115 4.115 11 C -0.116 4.116 12 C -0.141 4.141 13 C 0.058 3.942 14 N -0.098 5.098 15 C -0.091 4.091 16 C -0.290 4.290 17 C -0.133 4.133 18 N -0.103 5.103 19 C -0.082 4.082 20 C -0.184 4.184 21 C 0.019 3.981 22 N -0.320 5.320 23 C -0.462 4.462 24 H 0.083 0.917 25 C -0.227 4.227 26 N -0.556 5.556 27 Si 0.894 3.106 28 H -0.211 1.211 29 H -0.221 1.221 30 H -0.221 1.221 31 H 0.076 0.924 32 H 0.056 0.944 33 H 0.069 0.931 34 H 0.234 0.766 35 H 0.153 0.847 36 H 0.159 0.841 37 H 0.152 0.848 38 H 0.195 0.805 39 H 0.172 0.828 40 H 0.207 0.793 41 H 0.170 0.830 42 H 0.085 0.915 43 H 0.086 0.914 44 H 0.073 0.927 45 H 0.047 0.953 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 5.005 11.103 -22.731 25.788 hybrid contribution -0.134 1.529 -2.250 2.723 sum 4.871 12.632 -24.981 28.414 Atomic orbital electron populations 1.22202 0.97569 1.01451 1.00077 1.21048 0.92634 0.94998 0.86548 0.94534 1.22162 0.97250 0.90957 0.86518 0.88730 1.45946 1.68798 1.14291 1.06808 1.18093 0.77925 0.87425 0.82417 1.90800 1.49398 1.18435 1.82159 1.19916 1.02828 0.94253 0.93628 1.21457 0.97486 0.92213 1.00303 1.20915 0.99038 1.00272 0.91352 1.20968 1.02058 0.93143 0.97977 1.17402 1.02696 0.93506 0.80645 1.45899 1.48564 1.10065 1.05306 1.22639 1.00404 0.98899 0.87204 1.21626 1.12964 0.94663 0.99794 1.24143 0.97821 0.98738 0.92618 1.77588 1.22438 0.98201 1.12056 1.20977 0.96366 1.00726 0.90125 1.23210 0.97150 0.99877 0.98174 1.21541 0.94897 0.90673 0.90985 1.44600 1.57471 1.29221 1.00686 1.19663 1.47997 0.97388 0.81121 0.91720 1.25747 1.00129 0.93980 1.02869 1.70776 1.44498 1.14662 1.25622 0.83529 0.76337 0.75049 0.75658 1.21114 1.22149 1.22059 0.92382 0.94367 0.93055 0.76639 0.84656 0.84110 0.84820 0.80488 0.82788 0.79257 0.83034 0.91515 0.91361 0.92695 0.95340 0.91891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.93 9.14 37.15 0.34 -2.59 16 2 C 0.16 3.07 3.49 -66.95 -0.23 2.84 16 3 H 0.04 0.69 7.70 -51.93 -0.40 0.29 16 4 C 0.14 2.41 2.76 -66.09 -0.18 2.23 16 5 H 0.09 1.83 7.39 -51.92 -0.38 1.45 16 6 N -0.71 -10.13 5.16 -52.96 -0.27 -10.40 16 7 C 0.56 8.45 7.77 -12.32 -0.10 8.36 16 8 O -0.53 -10.13 16.07 5.32 0.09 -10.05 16 9 C -0.10 -1.24 5.87 -104.99 -0.62 -1.86 16 10 C -0.10 -0.83 9.54 -39.16 -0.37 -1.20 16 11 C -0.10 -0.66 10.02 -39.67 -0.40 -1.06 16 12 C -0.12 -0.89 9.45 -39.32 -0.37 -1.27 16 13 C 0.15 1.59 6.67 -83.64 -0.56 1.03 16 14 N -0.32 -3.46 3.80 -10.73 -0.04 -3.50 16 15 C 0.05 0.38 10.79 -17.10 -0.18 0.20 16 16 C -0.26 -1.85 10.81 -39.99 -0.43 -2.29 16 17 C 0.05 0.47 12.03 -17.33 -0.21 0.26 16 18 N -0.28 -3.45 11.88 30.64 0.36 -3.08 16 19 C -0.06 -0.78 9.21 -38.99 -0.36 -1.14 16 20 C -0.14 -2.75 6.77 -24.58 -0.17 -2.91 16 21 C 0.14 3.38 5.30 -2.53 -0.01 3.36 16 22 N -0.59 -14.53 3.02 -162.57 -0.49 -15.02 16 23 C -0.33 -9.14 9.62 -15.06 -0.14 -9.28 16 24 H 0.06 1.76 7.97 -52.49 -0.42 1.34 16 25 C -0.03 -0.71 5.09 -17.43 -0.09 -0.80 16 26 N -0.92 -27.47 12.93 55.49 0.72 -26.75 16 27 Si 1.06 25.09 30.00 -169.99 -5.10 19.99 16 28 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 29 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 30 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 31 H 0.06 1.17 8.02 -51.93 -0.42 0.75 16 32 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.40 4.55 6.36 -40.82 -0.26 4.29 16 35 H 0.14 0.91 6.40 -52.49 -0.34 0.57 16 36 H 0.14 0.54 8.06 -52.49 -0.42 0.11 16 37 H 0.13 0.58 6.74 -52.48 -0.35 0.23 16 38 H 0.18 0.65 7.06 -52.48 -0.37 0.28 16 39 H 0.15 0.65 8.06 -52.49 -0.42 0.23 16 40 H 0.19 1.01 8.06 -52.49 -0.42 0.59 16 41 H 0.15 2.25 7.29 -52.49 -0.38 1.86 16 42 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 43 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 44 H 0.05 1.39 7.95 -51.93 -0.41 0.98 16 45 H 0.03 0.72 6.80 -51.93 -0.35 0.36 16 46 H 0.27 8.14 6.05 -40.82 -0.25 7.89 16 LS Contribution 380.98 15.07 5.74 5.74 Total: -1.00 -35.30 380.98 -9.17 -44.48 By element: Atomic # 1 Polarization: 10.80 SS G_CDS: -6.09 Total: 4.71 kcal Atomic # 6 Polarization: -2.02 SS G_CDS: -4.09 Total: -6.11 kcal Atomic # 7 Polarization: -59.03 SS G_CDS: 0.28 Total: -58.76 kcal Atomic # 8 Polarization: -10.13 SS G_CDS: 0.09 Total: -10.05 kcal Atomic # 14 Polarization: 25.09 SS G_CDS: -5.10 Total: 19.99 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -35.30 -9.17 -44.48 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088921041.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.127 kcal (2) G-P(sol) polarization free energy of solvation -35.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.476 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.74 seconds