Wall clock time and date at job start Sat Apr 11 2020 06:07:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08998 * 109.99992 * 2 1 4 4 C 1.54338 * 109.99305 * 238.96946 * 2 1 3 5 5 H 1.09007 * 110.51111 * 336.97303 * 4 2 1 6 6 N 1.46498 * 111.00560 * 100.12400 * 4 2 1 7 7 C 1.34771 * 120.00128 * 200.24129 * 6 4 2 8 8 O 1.21552 * 120.00010 * 359.97438 * 7 6 4 9 9 C 1.47863 * 120.00034 * 179.97438 * 7 6 4 10 10 C 1.39614 * 120.11059 * 359.97438 * 9 7 6 11 11 C 1.37979 * 119.98592 * 180.02562 * 10 9 7 12 12 C 1.38262 * 120.21875 * 359.97438 * 11 10 9 13 13 C 1.38914 * 120.22530 * 359.97438 * 12 11 10 14 14 N 1.40210 * 119.99477 * 180.02562 * 13 12 11 15 15 C 1.35219 * 126.05510 * 4.71561 * 14 13 12 16 16 C 1.35320 * 107.71635 * 179.87262 * 15 14 13 17 17 C 1.39922 * 107.93031 * 0.39065 * 16 15 14 18 18 N 1.30881 * 108.24221 * 359.75838 * 17 16 15 19 19 C 1.38603 * 120.01203 * 359.76812 * 13 12 11 20 20 C 1.55161 * 103.02156 * 218.66481 * 4 2 1 21 21 C 1.54907 * 101.58173 * 35.30375 * 20 4 2 22 22 N 1.47024 * 109.88790 * 121.09928 * 2 1 3 23 23 C 1.36932 * 125.64878 * 298.39735 * 22 2 1 24 24 H 1.08002 * 119.99770 * 342.78068 * 23 22 2 25 25 C 1.38810 * 120.00476 * 162.77334 * 23 22 2 26 26 N 1.31617 * 119.99714 * 332.10369 * 25 23 22 27 27 Si 1.86797 * 120.00373 * 152.09705 * 25 23 22 28 28 H 1.48493 * 109.47334 * 180.02562 * 27 25 23 29 29 H 1.48502 * 109.47093 * 300.00759 * 27 25 23 30 30 H 1.48501 * 109.46890 * 60.00322 * 27 25 23 31 31 H 1.09002 * 109.46941 * 300.35159 * 1 2 3 32 32 H 1.08997 * 109.47226 * 60.35637 * 1 2 3 33 33 H 1.09004 * 109.47080 * 180.35391 * 1 2 3 34 34 H 0.97000 * 119.99508 * 20.23223 * 6 4 2 35 35 H 1.07992 * 120.00741 * 0.02562 * 10 9 7 36 36 H 1.07996 * 119.89358 * 179.97438 * 11 10 9 37 37 H 1.08005 * 119.88885 * 180.02562 * 12 11 10 38 38 H 1.08004 * 126.13965 * 0.02562 * 15 14 13 39 39 H 1.07999 * 126.03753 * 180.14108 * 16 15 14 40 40 H 1.07999 * 125.87965 * 179.73895 * 17 16 15 41 41 H 1.07999 * 120.11070 * 180.27846 * 19 13 12 42 42 H 1.08998 * 111.00115 * 277.22783 * 20 4 2 43 43 H 1.09002 * 111.00432 * 153.38147 * 20 4 2 44 44 H 1.08997 * 110.36428 * 204.15469 * 21 20 4 45 45 H 1.09003 * 110.36892 * 81.82910 * 21 20 4 46 46 H 0.97004 * 120.00513 * 353.95988 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9027 1.0242 0.0000 4 6 2.0576 -0.7477 -1.2428 5 1 1.3052 -1.4405 -1.6198 6 7 2.4631 0.1940 -2.2893 7 6 2.5607 -0.2206 -3.5679 8 8 2.3128 -1.3760 -3.8528 9 6 2.9694 0.7300 -4.6242 10 6 3.2542 2.0577 -4.2996 11 6 3.6348 2.9426 -5.2874 12 6 3.7361 2.5192 -6.5997 13 6 3.4559 1.2000 -6.9325 14 7 3.5607 0.7757 -8.2647 15 6 4.0071 1.5175 -9.3034 16 6 3.9551 0.7452 -10.4134 17 6 3.4524 -0.5072 -10.0436 18 7 3.2158 -0.4899 -8.7565 19 6 3.0779 0.3017 -5.9469 20 6 3.2864 -1.5183 -0.6916 21 6 2.8100 -1.8826 0.7366 22 7 2.0301 -0.7141 1.1838 23 6 1.8040 -0.3566 2.4862 24 1 1.4640 0.6413 2.7209 25 6 2.0115 -1.2766 3.5046 26 7 1.8827 -2.5643 3.2645 27 14 2.4736 -0.6873 5.2159 28 1 2.6384 -1.8578 6.1148 29 1 3.7494 0.0699 5.1510 30 1 1.4009 0.1944 5.7422 31 1 -0.3633 0.5193 0.8868 32 1 -0.3633 0.5083 -0.8931 33 1 -0.3633 -1.0277 0.0063 34 1 2.6611 1.1159 -2.0618 35 1 3.1766 2.3919 -3.2757 36 1 3.8544 3.9694 -5.0348 37 1 4.0349 3.2164 -7.3686 38 1 4.3467 2.5416 -9.2553 39 1 4.2461 1.0441 -11.4096 40 1 3.2877 -1.3439 -10.7063 41 1 2.8641 -0.7254 -6.2032 42 1 4.1670 -0.8767 -0.6581 43 1 3.4808 -2.4154 -1.2794 44 1 3.6656 -2.0412 1.3929 45 1 2.1802 -2.7719 0.7112 46 1 1.5583 -2.8668 2.4018 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088921041.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:05 Heat of formation + Delta-G solvation = 80.876548 kcal Electronic energy + Delta-G solvation = -28376.754554 eV Core-core repulsion = 24461.067942 eV Total energy + Delta-G solvation = -3915.686612 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.52975 -41.45751 -39.97804 -39.02399 -35.93353 -34.76683 -33.86165 -32.49034 -32.25601 -31.26563 -30.44576 -29.81625 -26.93245 -25.75659 -25.04404 -24.40925 -22.75738 -22.09103 -21.77383 -21.56863 -21.00517 -19.65388 -19.24211 -17.83216 -17.76793 -17.13040 -16.44527 -16.36559 -16.21522 -15.95327 -15.79919 -15.69102 -15.31109 -15.07337 -14.82378 -14.80622 -14.54412 -14.39656 -13.80271 -13.70652 -13.55176 -13.46314 -13.07175 -12.90116 -12.66406 -12.61514 -12.49015 -12.26529 -12.18628 -11.89043 -11.73061 -11.70226 -11.53600 -11.44013 -11.19738 -10.51572 -10.33805 -10.18862 -10.07641 -9.15122 -9.03687 -8.29685 -5.32152 -0.44090 -0.10243 1.07975 1.34847 1.59154 1.67426 1.74594 1.84325 1.85460 1.90837 2.66438 2.72064 3.20579 3.30051 3.45772 3.60268 3.66484 3.72640 3.75997 3.89629 4.01157 4.04654 4.06603 4.21309 4.29027 4.33180 4.41569 4.46527 4.62914 4.67590 4.73055 4.78121 4.80144 4.88237 4.97307 5.02256 5.02645 5.09196 5.14914 5.17324 5.21387 5.26805 5.44753 5.54594 5.67895 5.71067 6.14905 6.31465 6.40383 6.60955 6.88655 7.05982 7.70866 8.28996 9.02294 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.028632 B = 0.002048 C = 0.001983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 977.685893 B =13668.061278 C =14118.553305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.153 3.847 3 H 0.062 0.938 4 C 0.152 3.848 5 H 0.076 0.924 6 N -0.693 5.693 7 C 0.556 3.444 8 O -0.581 6.581 9 C -0.122 4.122 10 C -0.089 4.089 11 C -0.082 4.082 12 C -0.103 4.103 13 C 0.135 3.865 14 N -0.339 5.339 15 C 0.051 3.949 16 C -0.265 4.265 17 C 0.048 3.952 18 N -0.349 5.349 19 C -0.089 4.089 20 C -0.130 4.130 21 C 0.150 3.850 22 N -0.612 5.612 23 C -0.332 4.332 24 H 0.068 0.932 25 C -0.084 4.084 26 N -0.949 5.949 27 Si 1.117 2.883 28 H -0.297 1.297 29 H -0.279 1.279 30 H -0.273 1.273 31 H 0.045 0.955 32 H 0.073 0.927 33 H 0.028 0.972 34 H 0.416 0.584 35 H 0.160 0.840 36 H 0.187 0.813 37 H 0.175 0.825 38 H 0.220 0.780 39 H 0.185 0.815 40 H 0.212 0.788 41 H 0.112 0.888 42 H 0.082 0.918 43 H 0.069 0.931 44 H 0.027 0.973 45 H 0.001 0.999 46 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.541 18.151 -26.993 33.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.046 3.954 3 H 0.079 0.921 4 C 0.046 3.954 5 H 0.094 0.906 6 N -0.345 5.345 7 C 0.344 3.656 8 O -0.461 6.461 9 C -0.125 4.125 10 C -0.108 4.108 11 C -0.100 4.100 12 C -0.124 4.124 13 C 0.043 3.957 14 N -0.116 5.116 15 C -0.090 4.090 16 C -0.293 4.293 17 C -0.138 4.138 18 N -0.168 5.168 19 C -0.110 4.110 20 C -0.169 4.169 21 C 0.024 3.976 22 N -0.338 5.338 23 C -0.460 4.460 24 H 0.086 0.914 25 C -0.279 4.279 26 N -0.592 5.592 27 Si 0.941 3.059 28 H -0.224 1.224 29 H -0.205 1.205 30 H -0.199 1.199 31 H 0.064 0.936 32 H 0.091 0.909 33 H 0.047 0.953 34 H 0.255 0.745 35 H 0.177 0.823 36 H 0.204 0.796 37 H 0.192 0.808 38 H 0.237 0.763 39 H 0.202 0.798 40 H 0.228 0.772 41 H 0.130 0.870 42 H 0.101 0.899 43 H 0.087 0.913 44 H 0.046 0.954 45 H 0.019 0.981 46 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 6.349 16.252 -24.509 30.085 hybrid contribution -0.552 0.017 -1.892 1.971 sum 5.797 16.269 -26.401 31.548 Atomic orbital electron populations 1.22104 0.96895 1.00321 1.01179 1.21230 0.93094 0.95607 0.85450 0.92079 1.21707 0.96012 0.90992 0.86654 0.90596 1.45652 1.68498 1.14517 1.05786 1.18640 0.76640 0.87335 0.82944 1.90776 1.51604 1.20867 1.82895 1.19622 1.05556 0.95255 0.92095 1.21758 0.96272 0.90555 1.02202 1.21449 0.96547 1.01703 0.90277 1.21484 0.99543 0.91873 0.99464 1.17672 1.03091 0.94537 0.80396 1.46042 1.49487 1.10121 1.05908 1.23431 0.98975 1.00364 0.86211 1.22066 1.12293 0.93706 1.01207 1.24713 0.96743 1.00346 0.92015 1.77551 1.25118 1.00234 1.13909 1.20756 0.98971 0.99772 0.91524 1.23055 0.98137 1.00479 0.95222 1.21357 0.93388 0.89862 0.92970 1.44827 1.58150 1.29527 1.01338 1.19945 1.46330 0.97236 0.82521 0.91381 1.27154 1.00457 0.93683 1.06654 1.70897 1.47358 1.15977 1.24985 0.82834 0.77150 0.74557 0.71349 1.22384 1.20488 1.19877 0.93563 0.90858 0.95321 0.74472 0.82281 0.79616 0.80803 0.76319 0.79790 0.77190 0.87004 0.89931 0.91253 0.95435 0.98109 0.93638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.47 9.14 71.98 0.66 -4.81 16 2 C 0.15 5.91 3.49 45.34 0.16 6.07 16 3 H 0.06 2.13 7.70 -2.39 -0.02 2.11 16 4 C 0.15 5.41 2.76 46.19 0.13 5.54 16 5 H 0.08 3.04 7.39 -2.38 -0.02 3.02 16 6 N -0.69 -18.96 5.16 -439.74 -2.27 -21.23 16 7 C 0.56 17.13 7.77 86.79 0.67 17.80 16 8 O -0.58 -23.57 16.07 -3.88 -0.06 -23.63 16 9 C -0.12 -2.88 5.87 -20.10 -0.12 -3.00 16 10 C -0.09 -1.23 9.54 22.54 0.21 -1.01 16 11 C -0.08 -0.67 10.02 22.21 0.22 -0.45 16 12 C -0.10 -1.07 9.45 22.44 0.21 -0.86 16 13 C 0.14 2.71 6.67 38.05 0.25 2.96 16 14 N -0.34 -7.01 3.80 -187.86 -0.71 -7.72 16 15 C 0.05 0.62 10.79 83.50 0.90 1.53 16 16 C -0.26 -3.14 10.81 22.00 0.24 -2.91 16 17 C 0.05 0.83 12.03 85.24 1.03 1.85 16 18 N -0.35 -8.85 11.88 -56.97 -0.68 -9.53 16 19 C -0.09 -2.37 9.21 22.65 0.21 -2.16 16 20 C -0.13 -5.00 6.77 31.99 0.22 -4.78 16 21 C 0.15 7.33 5.30 86.85 0.46 7.79 16 22 N -0.61 -30.37 3.02 -668.24 -2.02 -32.39 16 23 C -0.33 -18.25 9.62 84.03 0.81 -17.44 16 24 H 0.07 3.64 7.97 -2.91 -0.02 3.62 16 25 C -0.08 -4.81 5.09 84.86 0.43 -4.38 16 26 N -0.95 -59.25 12.93 21.65 0.28 -58.97 16 27 Si 1.12 50.91 30.00 68.60 2.06 52.96 16 28 H -0.30 -14.04 7.11 99.48 0.71 -13.33 16 29 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 30 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 31 H 0.05 1.82 8.02 -2.39 -0.02 1.80 16 32 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 33 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 34 H 0.42 8.25 6.36 -92.71 -0.59 7.66 16 35 H 0.16 1.36 6.40 -2.91 -0.02 1.34 16 36 H 0.19 -0.03 8.06 -2.91 -0.02 -0.05 16 37 H 0.17 0.36 6.74 -2.91 -0.02 0.34 16 38 H 0.22 0.45 7.06 -2.91 -0.02 0.43 16 39 H 0.18 0.91 8.06 -2.91 -0.02 0.89 16 40 H 0.21 2.22 8.06 -2.91 -0.02 2.19 16 41 H 0.11 3.78 7.29 -2.91 -0.02 3.76 16 42 H 0.08 2.93 8.14 -2.39 -0.02 2.91 16 43 H 0.07 2.67 8.14 -2.39 -0.02 2.65 16 44 H 0.03 1.46 7.95 -2.39 -0.02 1.44 16 45 H 0.00 0.06 6.80 -2.39 -0.02 0.05 16 46 H 0.25 16.20 6.05 -92.71 -0.56 15.64 16 Total: -1.00 -84.78 380.98 3.92 -80.86 By element: Atomic # 1 Polarization: 17.27 SS G_CDS: 0.63 Total: 17.90 kcal Atomic # 6 Polarization: -4.95 SS G_CDS: 6.69 Total: 1.74 kcal Atomic # 7 Polarization: -124.44 SS G_CDS: -5.40 Total: -129.84 kcal Atomic # 8 Polarization: -23.57 SS G_CDS: -0.06 Total: -23.63 kcal Atomic # 14 Polarization: 50.91 SS G_CDS: 2.06 Total: 52.96 kcal Total: -84.78 3.92 -80.86 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088921041.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.741 kcal (2) G-P(sol) polarization free energy of solvation -84.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.865 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds