Wall clock time and date at job start Sat Apr 11 2020 06:07:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08990 * 109.99926 * 2 1 4 4 C 1.54332 * 109.98711 * 238.96291 * 2 1 3 5 5 H 1.09000 * 110.51739 * 336.97677 * 4 2 1 6 6 N 1.46501 * 110.84952 * 100.20010 * 4 2 1 7 7 C 1.34778 * 119.99910 * 200.14355 * 6 4 2 8 8 O 1.21576 * 120.00386 * 0.02562 * 7 6 4 9 9 C 1.47645 * 119.99993 * 180.02562 * 7 6 4 10 10 C 1.40253 * 120.49491 * 180.02562 * 9 7 6 11 11 C 1.38009 * 118.35444 * 180.02562 * 10 9 7 12 12 C 1.39174 * 119.25792 * 359.97438 * 11 10 9 13 13 N 1.39412 * 119.53142 * 180.02562 * 12 11 10 14 14 C 1.36721 * 125.68414 * 359.68985 * 13 12 11 15 15 C 1.34770 * 108.18274 * 179.83343 * 14 13 12 16 16 C 1.41021 * 107.50477 * 0.42640 * 15 14 13 17 17 C 1.34773 * 107.49809 * 359.73701 * 16 15 14 18 18 N 1.32450 * 120.94220 * 359.97438 * 12 11 10 19 19 C 1.31642 * 121.79709 * 359.70679 * 18 12 11 20 20 C 1.55153 * 103.02177 * 218.66697 * 4 2 1 21 21 C 1.54910 * 101.58131 * 35.30861 * 20 4 2 22 22 N 1.47022 * 109.88185 * 121.09841 * 2 1 3 23 23 C 1.36935 * 125.64658 * 298.39185 * 22 2 1 24 24 H 1.07999 * 120.00236 * 341.17621 * 23 22 2 25 25 C 1.38817 * 119.99607 * 160.90305 * 23 22 2 26 26 N 1.31618 * 119.99566 * 157.69461 * 25 23 22 27 27 Si 1.86797 * 120.00128 * 337.69649 * 25 23 22 28 28 H 1.48503 * 109.47155 * 84.53769 * 27 25 23 29 29 H 1.48501 * 109.46787 * 204.53181 * 27 25 23 30 30 H 1.48495 * 109.47145 * 324.53345 * 27 25 23 31 31 H 1.09011 * 109.47097 * 300.35908 * 1 2 3 32 32 H 1.09001 * 109.47494 * 60.35558 * 1 2 3 33 33 H 1.08997 * 109.47729 * 180.36046 * 1 2 3 34 34 H 0.96991 * 120.00315 * 20.14749 * 6 4 2 35 35 H 1.07998 * 120.82307 * 359.97438 * 10 9 7 36 36 H 1.08000 * 120.36543 * 180.02562 * 11 10 9 37 37 H 1.07998 * 125.90608 * 0.02562 * 14 13 12 38 38 H 1.08003 * 126.25159 * 180.16425 * 15 14 13 39 39 H 1.07996 * 126.25202 * 179.71644 * 16 15 14 40 40 H 1.07998 * 125.90901 * 180.02562 * 17 16 15 41 41 H 1.08000 * 119.68435 * 180.30969 * 19 18 12 42 42 H 1.09005 * 111.00846 * 277.23331 * 20 4 2 43 43 H 1.09001 * 111.04041 * 153.39493 * 20 4 2 44 44 H 1.09010 * 110.36821 * 204.15344 * 21 20 4 45 45 H 1.08998 * 110.37036 * 81.83243 * 21 20 4 46 46 H 0.97006 * 120.00115 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0242 0.0000 4 6 2.0575 -0.7478 -1.2427 5 1 1.3051 -1.4406 -1.6197 6 7 2.4636 0.1968 -2.2863 7 6 2.5637 -0.2147 -3.5658 8 8 2.3166 -1.3696 -3.8541 9 6 2.9735 0.7372 -4.6175 10 6 3.0805 0.3202 -5.9523 11 6 3.4677 1.2466 -6.8993 12 6 3.7365 2.5532 -6.5025 13 7 4.1275 3.4937 -7.4545 14 6 4.2868 3.2564 -8.7915 15 6 4.6672 4.4074 -9.3804 16 6 4.7562 5.3901 -8.3730 17 6 4.4213 4.8055 -7.2058 18 7 3.6252 2.9162 -5.2336 19 6 3.2531 2.0668 -4.2993 20 6 3.2862 -1.5184 -0.6916 21 6 2.8098 -1.8826 0.7367 22 7 2.0300 -0.7141 1.1839 23 6 1.8038 -0.3565 2.4862 24 1 1.4889 0.6491 2.7232 25 6 1.9738 -1.2880 3.5013 26 7 2.1929 -0.8844 4.7348 27 14 1.8916 -3.1141 3.1166 28 1 3.2205 -3.5811 2.6461 29 1 1.5097 -3.8613 4.3418 30 1 0.8795 -3.3515 2.0563 31 1 -0.3634 0.5195 0.8868 32 1 -0.3634 0.5083 -0.8931 33 1 -0.3634 -1.0276 0.0065 34 1 2.6604 1.1183 -2.0565 35 1 2.8661 -0.7006 -6.2321 36 1 3.5602 0.9608 -7.9367 37 1 4.1314 2.3110 -9.2899 38 1 4.8712 4.5500 -10.4314 39 1 5.0411 6.4226 -8.5115 40 1 4.3900 5.2896 -6.2409 41 1 3.1687 2.4008 -3.2757 42 1 4.1669 -0.8770 -0.6580 43 1 3.4811 -2.4157 -1.2790 44 1 3.6655 -2.0414 1.3931 45 1 2.1800 -2.7719 0.7114 46 1 2.3121 -1.5353 5.4441 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088929235.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:09 Heat of formation + Delta-G solvation = 75.946019 kcal Electronic energy + Delta-G solvation = -28342.926137 eV Core-core repulsion = 24427.025722 eV Total energy + Delta-G solvation = -3915.900416 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.78399 -41.53900 -40.41375 -39.22345 -35.76480 -34.61214 -34.02242 -33.75504 -32.25679 -31.52421 -30.29392 -29.85852 -26.77523 -25.86543 -25.36043 -24.81405 -22.97736 -22.02496 -21.49987 -21.20752 -21.05757 -19.73782 -18.84778 -18.76762 -17.95950 -17.19216 -16.92029 -16.57939 -16.32116 -16.07173 -15.85908 -15.70820 -15.22939 -14.86337 -14.69873 -14.56898 -14.39410 -14.28909 -14.24717 -13.98881 -13.93926 -13.50660 -13.26304 -13.22091 -13.00027 -12.91334 -12.60380 -12.45873 -12.12332 -12.04305 -11.62729 -11.50753 -11.36173 -11.25525 -11.00564 -10.81173 -10.77076 -10.14855 -9.32552 -9.25959 -9.07548 -8.16359 -5.42695 -0.77512 -0.00500 1.11872 1.30564 1.39657 1.46718 1.51166 1.86027 1.93152 2.03139 2.41852 2.69126 3.04131 3.07586 3.27571 3.47258 3.57499 3.64403 3.67791 3.75074 3.82242 4.11939 4.17060 4.27154 4.29418 4.39452 4.42905 4.49256 4.53106 4.65425 4.71494 4.75915 4.81352 4.86809 4.91509 4.99492 5.05487 5.15977 5.18965 5.24835 5.30723 5.35662 5.52166 5.70839 5.83861 6.01852 6.12404 6.27111 6.42144 6.64279 6.76003 7.08025 7.54742 8.10062 9.03061 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.027343 B = 0.002084 C = 0.002007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1023.776818 B =13432.237044 C =13949.432119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.150 3.850 3 H 0.062 0.938 4 C 0.151 3.849 5 H 0.092 0.908 6 N -0.698 5.698 7 C 0.572 3.428 8 O -0.568 6.568 9 C -0.210 4.210 10 C 0.013 3.987 11 C -0.186 4.186 12 C 0.359 3.641 13 N -0.407 5.407 14 C -0.021 4.021 15 C -0.189 4.189 16 C -0.199 4.199 17 C -0.014 4.014 18 N -0.525 5.525 19 C 0.178 3.822 20 C -0.127 4.127 21 C 0.104 3.896 22 N -0.617 5.617 23 C -0.219 4.219 24 H 0.068 0.932 25 C -0.036 4.036 26 N -0.954 5.954 27 Si 0.936 3.064 28 H -0.272 1.272 29 H -0.311 1.311 30 H -0.272 1.272 31 H 0.043 0.957 32 H 0.076 0.924 33 H 0.039 0.961 34 H 0.413 0.587 35 H 0.166 0.834 36 H 0.178 0.822 37 H 0.198 0.802 38 H 0.166 0.834 39 H 0.158 0.842 40 H 0.169 0.831 41 H 0.191 0.809 42 H 0.084 0.916 43 H 0.083 0.917 44 H 0.045 0.955 45 H 0.021 0.979 46 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.184 8.216 -30.846 32.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.044 3.956 3 H 0.080 0.920 4 C 0.046 3.954 5 H 0.110 0.890 6 N -0.350 5.350 7 C 0.359 3.641 8 O -0.448 6.448 9 C -0.217 4.217 10 C -0.013 4.013 11 C -0.208 4.208 12 C 0.132 3.868 13 N -0.083 5.083 14 C -0.145 4.145 15 C -0.212 4.212 16 C -0.222 4.222 17 C -0.139 4.139 18 N -0.238 5.238 19 C 0.018 3.982 20 C -0.167 4.167 21 C -0.021 4.021 22 N -0.343 5.343 23 C -0.347 4.347 24 H 0.085 0.915 25 C -0.230 4.230 26 N -0.601 5.601 27 Si 0.766 3.234 28 H -0.199 1.199 29 H -0.240 1.240 30 H -0.198 1.198 31 H 0.062 0.938 32 H 0.095 0.905 33 H 0.058 0.942 34 H 0.252 0.748 35 H 0.183 0.817 36 H 0.195 0.805 37 H 0.215 0.785 38 H 0.183 0.817 39 H 0.175 0.825 40 H 0.187 0.813 41 H 0.207 0.793 42 H 0.103 0.897 43 H 0.102 0.898 44 H 0.064 0.936 45 H 0.039 0.961 46 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 4.125 8.092 -30.409 31.736 hybrid contribution -0.285 -1.296 0.828 1.564 sum 3.840 6.796 -29.581 30.593 Atomic orbital electron populations 1.22132 0.96296 1.01069 1.01437 1.21283 0.93526 0.95699 0.85093 0.92030 1.21781 0.96347 0.90914 0.86403 0.89009 1.45723 1.68635 1.14503 1.06142 1.18068 0.76630 0.87045 0.82319 1.90786 1.51474 1.19996 1.82532 1.20838 1.09808 0.95650 0.95360 1.21768 0.88532 1.00912 0.90092 1.21767 1.05028 0.90660 1.03357 1.18782 0.92704 0.87885 0.87459 1.41679 1.51757 1.08287 1.06618 1.22535 1.08730 1.02514 0.80714 1.21452 1.06673 0.92420 1.00680 1.21441 1.07590 1.01103 0.92106 1.22326 1.06972 0.83301 1.01316 1.67035 1.17935 1.38678 1.00121 1.23093 0.88889 0.87363 0.98833 1.23046 0.98228 1.01136 0.94267 1.22012 0.94386 0.90356 0.95339 1.44899 1.58578 1.29483 1.01316 1.18502 1.40138 0.95427 0.80653 0.91469 1.25562 1.01382 1.01220 0.94843 1.69946 1.53676 1.34904 1.01570 0.86100 0.78759 0.83052 0.75486 1.19857 1.23980 1.19784 0.93768 0.90548 0.94168 0.74813 0.81657 0.80471 0.78514 0.81665 0.82477 0.81319 0.79264 0.89716 0.89826 0.93642 0.96140 0.93020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.93 9.14 71.98 0.66 -4.27 16 2 C 0.15 5.12 3.48 45.34 0.16 5.28 16 3 H 0.06 1.95 7.69 -2.39 -0.02 1.93 16 4 C 0.15 4.37 2.76 46.18 0.13 4.50 16 5 H 0.09 2.86 7.40 -2.39 -0.02 2.84 16 6 N -0.70 -15.11 5.16 -439.96 -2.27 -17.38 16 7 C 0.57 13.08 7.77 86.73 0.67 13.76 16 8 O -0.57 -16.98 16.14 -3.96 -0.06 -17.04 16 9 C -0.21 -3.74 5.89 -19.99 -0.12 -3.85 16 10 C 0.01 0.20 9.70 22.71 0.22 0.42 16 11 C -0.19 -2.39 9.46 22.44 0.21 -2.18 16 12 C 0.36 6.21 7.48 132.92 0.99 7.21 16 13 N -0.41 -6.83 2.96 -352.12 -1.04 -7.87 16 14 C -0.02 -0.26 10.71 83.13 0.89 0.63 16 15 C -0.19 -2.34 10.86 22.16 0.24 -2.10 16 16 C -0.20 -2.90 10.86 22.16 0.24 -2.66 16 17 C -0.01 -0.25 10.99 83.14 0.91 0.67 16 18 N -0.53 -9.87 9.80 -191.88 -1.88 -11.75 16 19 C 0.18 2.84 10.71 85.04 0.91 3.76 16 20 C -0.13 -4.00 6.77 31.98 0.22 -3.78 16 21 C 0.10 4.28 4.69 86.85 0.41 4.69 16 22 N -0.62 -27.67 2.93 -668.24 -1.96 -29.63 16 23 C -0.22 -11.98 10.17 84.03 0.85 -11.13 16 24 H 0.07 3.96 8.06 -2.91 -0.02 3.93 16 25 C -0.04 -2.06 5.43 84.86 0.46 -1.60 16 26 N -0.95 -59.32 13.97 21.65 0.30 -59.02 16 27 Si 0.94 46.71 24.27 68.60 1.67 48.37 16 28 H -0.27 -12.87 6.50 99.48 0.65 -12.22 16 29 H -0.31 -15.82 7.11 99.48 0.71 -15.12 16 30 H -0.27 -13.22 6.66 99.48 0.66 -12.56 16 31 H 0.04 1.60 8.03 -2.38 -0.02 1.58 16 32 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 33 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 34 H 0.41 6.63 6.37 -92.71 -0.59 6.04 16 35 H 0.17 2.22 7.73 -2.91 -0.02 2.19 16 36 H 0.18 1.09 6.66 -2.91 -0.02 1.07 16 37 H 0.20 1.02 6.96 -2.91 -0.02 1.00 16 38 H 0.17 1.24 8.06 -2.91 -0.02 1.21 16 39 H 0.16 1.69 8.06 -2.91 -0.02 1.66 16 40 H 0.17 2.78 8.03 -2.91 -0.02 2.76 16 41 H 0.19 2.03 6.41 -2.91 -0.02 2.01 16 42 H 0.08 2.47 8.14 -2.38 -0.02 2.46 16 43 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16 44 H 0.05 2.02 6.67 -2.38 -0.02 2.00 16 45 H 0.02 0.89 5.57 -2.39 -0.01 0.88 16 46 H 0.26 15.54 8.31 -92.70 -0.77 14.77 16 Total: -1.00 -73.89 374.93 3.13 -70.76 By element: Atomic # 1 Polarization: 13.90 SS G_CDS: 0.32 Total: 14.22 kcal Atomic # 6 Polarization: 1.27 SS G_CDS: 8.06 Total: 9.33 kcal Atomic # 7 Polarization: -118.80 SS G_CDS: -6.85 Total: -125.65 kcal Atomic # 8 Polarization: -16.98 SS G_CDS: -0.06 Total: -17.04 kcal Atomic # 14 Polarization: 46.71 SS G_CDS: 1.67 Total: 48.37 kcal Total: -73.89 3.13 -70.76 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088929235.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.707 kcal (2) G-P(sol) polarization free energy of solvation -73.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.761 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds