Wall clock time and date at job start Sat Apr 11 2020 06:07:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.99339 * 2 1 4 4 C 1.54321 * 109.88204 * 238.90463 * 2 1 3 5 5 H 1.09002 * 110.72109 * 336.75211 * 4 2 1 6 6 N 1.46505 * 110.72218 * 99.85110 * 4 2 1 7 7 C 1.34771 * 119.99559 * 202.56055 * 6 4 2 8 8 O 1.21507 * 120.00726 * 359.97438 * 7 6 4 9 9 C 1.48190 * 119.99558 * 179.97438 * 7 6 4 10 10 C 1.39114 * 119.69169 * 179.97438 * 9 7 6 11 11 C 1.39290 * 118.97472 * 179.97438 * 10 9 7 12 12 N 1.39908 * 120.82462 * 180.02562 * 11 10 9 13 13 C 1.36627 * 125.67617 * 359.69668 * 12 11 10 14 14 C 1.34814 * 108.19454 * 179.86326 * 13 12 11 15 15 C 1.40969 * 107.48148 * 0.39257 * 14 13 12 16 16 C 1.34820 * 107.48304 * 359.75368 * 15 14 13 17 17 C 1.39282 * 118.35506 * 0.02562 * 11 10 9 18 18 C 1.38331 * 119.27869 * 359.97438 * 17 11 10 19 19 N 1.31606 * 120.97272 * 359.71762 * 18 17 11 20 20 C 1.55157 * 103.10033 * 218.29831 * 4 2 1 21 21 C 1.54914 * 101.58180 * 35.59285 * 20 4 2 22 22 N 1.47431 * 104.82819 * 322.98999 * 21 20 4 23 23 C 1.36938 * 125.64246 * 204.17306 * 22 21 20 24 24 H 1.08002 * 119.99579 * 179.97438 * 23 22 21 25 25 C 1.38810 * 120.00588 * 359.96966 * 23 22 21 26 26 N 1.31616 * 119.99510 * 0.02562 * 25 23 22 27 27 Si 1.86795 * 120.00207 * 180.02562 * 25 23 22 28 28 H 1.48502 * 109.47242 * 0.02562 * 27 25 23 29 29 H 1.48501 * 109.47110 * 120.00209 * 27 25 23 30 30 H 1.48502 * 109.47171 * 240.00251 * 27 25 23 31 31 H 1.09000 * 109.47185 * 181.09533 * 1 2 3 32 32 H 1.08996 * 109.47557 * 301.09576 * 1 2 3 33 33 H 1.09002 * 109.47281 * 61.09850 * 1 2 3 34 34 H 0.96995 * 119.99603 * 22.54801 * 6 4 2 35 35 H 1.07996 * 120.51574 * 359.97438 * 10 9 7 36 36 H 1.08006 * 125.90149 * 0.02562 * 13 12 11 37 37 H 1.08006 * 126.25747 * 180.12315 * 14 13 12 38 38 H 1.08003 * 126.25911 * 179.73347 * 15 14 13 39 39 H 1.07997 * 125.90151 * 179.97438 * 16 15 14 40 40 H 1.08000 * 120.36365 * 179.97438 * 17 11 10 41 41 H 1.08000 * 119.51479 * 179.97438 * 18 17 11 42 42 H 1.09004 * 111.00537 * 153.66574 * 20 4 2 43 43 H 1.09001 * 111.00741 * 277.51995 * 20 4 2 44 44 H 1.08999 * 110.36938 * 81.82606 * 21 20 4 45 45 H 1.09003 * 110.36526 * 204.15298 * 21 20 4 46 46 H 0.97002 * 120.00010 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0548 -0.7495 -1.2427 5 1 1.3051 -1.4459 -1.6182 6 7 2.4516 0.1960 -2.2891 7 6 2.5006 -0.2040 -3.5752 8 8 2.2163 -1.3487 -3.8668 9 6 2.9014 0.7525 -4.6337 10 6 2.9504 0.3328 -5.9591 11 6 3.3285 1.2444 -6.9421 12 7 3.3904 0.8640 -8.2870 13 6 3.1097 -0.3802 -8.7769 14 6 3.2789 -0.3541 -10.1141 15 6 3.6872 0.9490 -10.4640 16 6 3.7472 1.6732 -9.3284 17 6 3.6435 2.5441 -6.5529 18 6 3.5711 2.8859 -5.2144 19 7 3.2046 2.0038 -4.3091 20 6 3.2897 -1.5140 -0.6968 21 6 2.8201 -1.8831 0.7326 22 7 2.0351 -0.7196 1.1840 23 6 1.8127 -0.3644 2.4877 24 1 1.2214 0.5102 2.7157 25 6 2.3469 -1.1284 3.5162 26 7 3.0677 -2.1940 3.2383 27 14 2.0427 -0.6442 5.2945 28 1 1.2078 0.5831 5.3375 29 1 1.3366 -1.7475 5.9941 30 1 3.3415 -0.3837 5.9656 31 1 -0.3633 -1.0275 0.0196 32 1 -0.3634 0.5307 0.8799 33 1 -0.3634 0.4967 -0.8997 34 1 2.6787 1.1097 -2.0563 35 1 2.6991 -0.6841 -6.2220 36 1 2.8025 -1.2359 -8.1939 37 1 3.1330 -1.1816 -10.7927 38 1 3.9112 1.3025 -11.4596 39 1 4.0291 2.7132 -9.2546 40 1 3.9411 3.2772 -7.2881 41 1 3.8149 3.8925 -4.9084 42 1 3.4871 -2.4092 -1.2865 43 1 4.1668 -0.8676 -0.6651 44 1 2.1952 -2.7758 0.7079 45 1 3.6788 -2.0380 1.3858 46 1 3.4413 -2.7277 3.9569 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088965713.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:19 Heat of formation + Delta-G solvation = 91.085499 kcal Electronic energy + Delta-G solvation = -28383.733915 eV Core-core repulsion = 24468.489996 eV Total energy + Delta-G solvation = -3915.243919 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.16588 -40.58479 -39.18706 -37.49554 -34.64356 -33.96467 -32.26380 -31.77245 -30.37859 -30.12743 -29.39401 -28.60335 -25.67597 -24.28531 -24.03752 -23.88551 -21.69258 -20.65981 -20.38226 -20.12416 -19.79785 -18.89130 -17.29488 -16.79080 -16.41821 -16.29392 -15.76128 -15.65827 -14.97406 -14.92283 -14.71511 -14.43777 -13.99956 -13.98430 -13.87122 -13.64318 -13.34101 -12.80017 -12.75952 -12.52974 -12.34684 -12.14464 -11.98847 -11.58003 -11.14392 -10.95795 -10.87074 -10.86028 -10.60326 -10.52473 -10.30567 -10.07004 -9.86233 -9.74391 -9.72710 -9.56472 -8.80524 -8.70941 -8.70387 -8.63064 -6.87940 -5.65671 -3.08374 0.14729 0.43813 1.95640 2.22520 2.57746 2.67498 3.08928 3.39329 3.44789 3.47283 3.56595 3.84518 4.11721 4.17591 4.47497 4.48907 4.53211 4.75021 4.90322 4.94327 5.09079 5.20998 5.24935 5.30865 5.37588 5.41972 5.53072 5.61655 5.79739 5.80325 5.83120 5.96466 6.12200 6.23644 6.30157 6.33043 6.44828 6.50960 6.59285 6.68914 6.69824 6.84961 6.88600 7.06973 7.29111 7.51337 7.62410 7.70020 7.84721 8.23971 8.34763 9.20339 9.80812 10.44751 11.37776 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.029771 B = 0.002042 C = 0.001987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 940.272637 B =13705.932748 C =14089.364243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.155 3.845 3 H 0.039 0.961 4 C 0.132 3.868 5 H 0.095 0.905 6 N -0.689 5.689 7 C 0.567 3.433 8 O -0.533 6.533 9 C 0.119 3.881 10 C -0.139 4.139 11 C 0.182 3.818 12 N -0.401 5.401 13 C -0.010 4.010 14 C -0.186 4.186 15 C -0.184 4.184 16 C -0.016 4.016 17 C -0.181 4.181 18 C 0.131 3.869 19 N -0.467 5.467 20 C -0.153 4.153 21 C 0.153 3.847 22 N -0.595 5.595 23 C -0.218 4.218 24 H 0.078 0.922 25 C -0.012 4.012 26 N -0.921 5.921 27 Si 0.914 3.086 28 H -0.280 1.280 29 H -0.291 1.291 30 H -0.291 1.291 31 H 0.052 0.948 32 H 0.055 0.945 33 H 0.038 0.962 34 H 0.410 0.590 35 H 0.156 0.844 36 H 0.170 0.830 37 H 0.144 0.856 38 H 0.144 0.856 39 H 0.167 0.833 40 H 0.146 0.854 41 H 0.173 0.827 42 H 0.062 0.938 43 H 0.063 0.937 44 H 0.015 0.985 45 H 0.110 0.890 46 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.942 9.857 -25.225 27.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.047 3.953 3 H 0.057 0.943 4 C 0.028 3.972 5 H 0.113 0.887 6 N -0.338 5.338 7 C 0.350 3.650 8 O -0.409 6.409 9 C -0.019 4.019 10 C -0.161 4.161 11 C 0.081 3.919 12 N -0.074 5.074 13 C -0.136 4.136 14 C -0.210 4.210 15 C -0.208 4.208 16 C -0.141 4.141 17 C -0.203 4.203 18 C -0.028 4.028 19 N -0.179 5.179 20 C -0.192 4.192 21 C 0.028 3.972 22 N -0.321 5.321 23 C -0.346 4.346 24 H 0.096 0.904 25 C -0.207 4.207 26 N -0.569 5.569 27 Si 0.745 3.255 28 H -0.205 1.205 29 H -0.218 1.218 30 H -0.218 1.218 31 H 0.071 0.929 32 H 0.074 0.926 33 H 0.057 0.943 34 H 0.246 0.754 35 H 0.173 0.827 36 H 0.187 0.813 37 H 0.162 0.838 38 H 0.161 0.839 39 H 0.185 0.815 40 H 0.164 0.836 41 H 0.190 0.810 42 H 0.081 0.919 43 H 0.081 0.919 44 H 0.033 0.967 45 H 0.128 0.872 46 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 1.704 9.244 -24.011 25.786 hybrid contribution -0.026 0.450 -0.014 0.451 sum 1.678 9.694 -24.025 25.961 Atomic orbital electron populations 1.22226 0.97733 1.01480 1.00004 1.21076 0.92636 0.94887 0.86741 0.94343 1.22276 0.97910 0.90766 0.86279 0.88726 1.45931 1.66364 1.15800 1.05729 1.17703 0.78454 0.86351 0.82483 1.90793 1.49491 1.18418 1.82234 1.21174 0.97086 0.91344 0.92322 1.21760 1.01269 1.01404 0.91701 1.18026 0.97073 0.94071 0.82779 1.41591 1.51619 1.10594 1.03575 1.22104 1.08250 0.87901 0.95298 1.21079 1.07421 0.98319 0.94161 1.21068 1.07461 0.94398 0.97896 1.21952 1.08604 0.97593 0.85988 1.22034 1.04311 0.94998 0.99004 1.22733 0.93269 0.99180 0.87612 1.67654 1.10509 1.01530 1.38243 1.23415 0.96649 0.99322 0.99860 1.21958 0.97433 0.88399 0.89398 1.44603 1.59169 1.28272 1.00040 1.19076 1.26937 1.08177 0.80455 0.90373 1.24793 1.00434 0.97440 0.98068 1.69800 1.39101 1.17952 1.30094 0.86001 0.77325 0.77513 0.84662 1.20550 1.21803 1.21788 0.92866 0.92624 0.94282 0.75413 0.82685 0.81274 0.83783 0.83864 0.81532 0.83602 0.80985 0.91890 0.91866 0.96688 0.87240 0.93754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.88 9.15 37.16 0.34 -2.54 16 2 C 0.15 3.11 3.50 -66.70 -0.23 2.88 16 3 H 0.04 0.76 7.70 -51.93 -0.40 0.36 16 4 C 0.13 2.42 2.79 -66.09 -0.18 2.24 16 5 H 0.09 1.83 7.33 -51.93 -0.38 1.45 16 6 N -0.69 -10.75 5.18 -52.86 -0.27 -11.02 16 7 C 0.57 8.83 7.81 -12.17 -0.10 8.73 16 8 O -0.53 -9.69 16.00 5.36 0.09 -9.60 16 9 C 0.12 1.52 6.75 -83.04 -0.56 0.96 16 10 C -0.14 -1.56 9.04 -38.87 -0.35 -1.91 16 11 C 0.18 1.73 6.65 -83.39 -0.55 1.18 16 12 N -0.40 -3.68 2.97 -60.74 -0.18 -3.86 16 13 C -0.01 -0.09 10.77 -16.63 -0.18 -0.27 16 14 C -0.19 -1.53 10.86 -39.76 -0.43 -1.96 16 15 C -0.18 -1.41 10.86 -39.76 -0.43 -1.84 16 16 C -0.02 -0.12 10.77 -16.63 -0.18 -0.30 16 17 C -0.18 -1.33 9.53 -39.16 -0.37 -1.71 16 18 C 0.13 1.04 11.17 -17.61 -0.20 0.85 16 19 N -0.47 -5.24 9.54 -9.87 -0.09 -5.33 16 20 C -0.15 -3.05 6.77 -24.58 -0.17 -3.21 16 21 C 0.15 3.72 5.89 -2.52 -0.01 3.71 16 22 N -0.60 -14.79 3.14 -162.22 -0.51 -15.30 16 23 C -0.22 -5.91 9.92 -15.06 -0.15 -6.06 16 24 H 0.08 2.05 7.83 -52.49 -0.41 1.64 16 25 C -0.01 -0.33 5.49 -17.43 -0.10 -0.43 16 26 N -0.92 -26.59 10.09 55.49 0.56 -26.03 16 27 Si 0.91 21.88 29.55 -169.99 -5.02 16.86 16 28 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 29 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 30 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 31 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.05 1.06 8.06 -51.93 -0.42 0.64 16 33 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.41 5.82 7.67 -40.82 -0.31 5.51 16 35 H 0.16 1.72 6.42 -52.49 -0.34 1.38 16 36 H 0.17 1.29 7.09 -52.48 -0.37 0.92 16 37 H 0.14 0.92 8.06 -52.48 -0.42 0.49 16 38 H 0.14 0.79 8.06 -52.48 -0.42 0.37 16 39 H 0.17 0.77 7.08 -52.49 -0.37 0.40 16 40 H 0.15 0.63 6.83 -52.49 -0.36 0.27 16 41 H 0.17 0.78 8.06 -52.49 -0.42 0.35 16 42 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 43 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 44 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 45 H 0.11 2.98 5.87 -51.93 -0.30 2.67 16 46 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 LS Contribution 380.57 15.07 5.74 5.74 Total: -1.00 -32.30 380.57 -9.74 -42.04 By element: Atomic # 1 Polarization: 12.39 SS G_CDS: -6.18 Total: 6.20 kcal Atomic # 6 Polarization: 4.16 SS G_CDS: -3.86 Total: 0.30 kcal Atomic # 7 Polarization: -61.04 SS G_CDS: -0.50 Total: -61.54 kcal Atomic # 8 Polarization: -9.69 SS G_CDS: 0.09 Total: -9.60 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -32.30 -9.74 -42.04 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088965713.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.124 kcal (2) G-P(sol) polarization free energy of solvation -32.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.039 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds