Wall clock time and date at job start Sat Apr 11 2020 06:07:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.99339 * 2 1 4 4 C 1.54321 * 109.88204 * 238.90463 * 2 1 3 5 5 H 1.09002 * 110.72109 * 336.75211 * 4 2 1 6 6 N 1.46505 * 110.72218 * 99.85110 * 4 2 1 7 7 C 1.34771 * 119.99559 * 202.56055 * 6 4 2 8 8 O 1.21507 * 120.00726 * 359.97438 * 7 6 4 9 9 C 1.48190 * 119.99558 * 179.97438 * 7 6 4 10 10 C 1.39114 * 119.69169 * 179.97438 * 9 7 6 11 11 C 1.39290 * 118.97472 * 179.97438 * 10 9 7 12 12 N 1.39908 * 120.82462 * 180.02562 * 11 10 9 13 13 C 1.36627 * 125.67617 * 359.69668 * 12 11 10 14 14 C 1.34814 * 108.19454 * 179.86326 * 13 12 11 15 15 C 1.40969 * 107.48148 * 0.39257 * 14 13 12 16 16 C 1.34820 * 107.48304 * 359.75368 * 15 14 13 17 17 C 1.39282 * 118.35506 * 0.02562 * 11 10 9 18 18 C 1.38331 * 119.27869 * 359.97438 * 17 11 10 19 19 N 1.31606 * 120.97272 * 359.71762 * 18 17 11 20 20 C 1.55157 * 103.10033 * 218.29831 * 4 2 1 21 21 C 1.54914 * 101.58180 * 35.59285 * 20 4 2 22 22 N 1.47431 * 104.82819 * 322.98999 * 21 20 4 23 23 C 1.36938 * 125.64246 * 204.17306 * 22 21 20 24 24 H 1.08002 * 119.99579 * 179.97438 * 23 22 21 25 25 C 1.38810 * 120.00588 * 359.96966 * 23 22 21 26 26 N 1.31616 * 119.99510 * 0.02562 * 25 23 22 27 27 Si 1.86795 * 120.00207 * 180.02562 * 25 23 22 28 28 H 1.48502 * 109.47242 * 0.02562 * 27 25 23 29 29 H 1.48501 * 109.47110 * 120.00209 * 27 25 23 30 30 H 1.48502 * 109.47171 * 240.00251 * 27 25 23 31 31 H 1.09000 * 109.47185 * 181.09533 * 1 2 3 32 32 H 1.08996 * 109.47557 * 301.09576 * 1 2 3 33 33 H 1.09002 * 109.47281 * 61.09850 * 1 2 3 34 34 H 0.96995 * 119.99603 * 22.54801 * 6 4 2 35 35 H 1.07996 * 120.51574 * 359.97438 * 10 9 7 36 36 H 1.08006 * 125.90149 * 0.02562 * 13 12 11 37 37 H 1.08006 * 126.25747 * 180.12315 * 14 13 12 38 38 H 1.08003 * 126.25911 * 179.73347 * 15 14 13 39 39 H 1.07997 * 125.90151 * 179.97438 * 16 15 14 40 40 H 1.08000 * 120.36365 * 179.97438 * 17 11 10 41 41 H 1.08000 * 119.51479 * 179.97438 * 18 17 11 42 42 H 1.09004 * 111.00537 * 153.66574 * 20 4 2 43 43 H 1.09001 * 111.00741 * 277.51995 * 20 4 2 44 44 H 1.08999 * 110.36938 * 81.82606 * 21 20 4 45 45 H 1.09003 * 110.36526 * 204.15298 * 21 20 4 46 46 H 0.97002 * 120.00010 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0548 -0.7495 -1.2427 5 1 1.3051 -1.4459 -1.6182 6 7 2.4516 0.1960 -2.2891 7 6 2.5006 -0.2040 -3.5752 8 8 2.2163 -1.3487 -3.8668 9 6 2.9014 0.7525 -4.6337 10 6 2.9504 0.3328 -5.9591 11 6 3.3285 1.2444 -6.9421 12 7 3.3904 0.8640 -8.2870 13 6 3.1097 -0.3802 -8.7769 14 6 3.2789 -0.3541 -10.1141 15 6 3.6872 0.9490 -10.4640 16 6 3.7472 1.6732 -9.3284 17 6 3.6435 2.5441 -6.5529 18 6 3.5711 2.8859 -5.2144 19 7 3.2046 2.0038 -4.3091 20 6 3.2897 -1.5140 -0.6968 21 6 2.8201 -1.8831 0.7326 22 7 2.0351 -0.7196 1.1840 23 6 1.8127 -0.3644 2.4877 24 1 1.2214 0.5102 2.7157 25 6 2.3469 -1.1284 3.5162 26 7 3.0677 -2.1940 3.2383 27 14 2.0427 -0.6442 5.2945 28 1 1.2078 0.5831 5.3375 29 1 1.3366 -1.7475 5.9941 30 1 3.3415 -0.3837 5.9656 31 1 -0.3633 -1.0275 0.0196 32 1 -0.3634 0.5307 0.8799 33 1 -0.3634 0.4967 -0.8997 34 1 2.6787 1.1097 -2.0563 35 1 2.6991 -0.6841 -6.2220 36 1 2.8025 -1.2359 -8.1939 37 1 3.1330 -1.1816 -10.7927 38 1 3.9112 1.3025 -11.4596 39 1 4.0291 2.7132 -9.2546 40 1 3.9411 3.2772 -7.2881 41 1 3.8149 3.8925 -4.9084 42 1 3.4871 -2.4092 -1.2865 43 1 4.1668 -0.8676 -0.6651 44 1 2.1952 -2.7758 0.7079 45 1 3.6788 -2.0380 1.3858 46 1 3.4413 -2.7277 3.9569 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088965713.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:18 Heat of formation + Delta-G solvation = 72.069023 kcal Electronic energy + Delta-G solvation = -28384.558531 eV Core-core repulsion = 24468.489996 eV Total energy + Delta-G solvation = -3916.068535 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.79869 -41.53222 -40.34305 -39.06480 -35.77248 -35.14070 -33.84937 -32.77665 -32.06335 -30.85410 -30.45489 -29.90355 -27.04079 -25.91142 -25.25970 -24.79022 -22.71030 -21.94506 -21.56808 -21.25618 -20.88926 -19.80874 -18.72568 -18.21084 -17.58355 -17.02171 -16.94723 -16.58281 -16.45482 -15.93285 -15.82181 -15.70310 -15.37665 -15.06220 -14.84705 -14.55330 -14.48056 -14.33288 -14.02089 -13.72188 -13.30507 -13.25501 -13.08324 -13.02586 -12.94538 -12.75693 -12.63640 -12.26985 -12.15066 -11.94475 -11.63544 -11.59137 -11.49976 -11.43630 -10.81173 -10.73976 -10.50629 -10.07840 -9.43751 -9.29112 -8.90343 -7.74403 -5.19354 -0.62723 -0.27039 1.26869 1.48660 1.49463 1.56221 1.59698 1.71071 1.95781 2.00367 2.51546 2.71642 2.98515 3.36057 3.40722 3.51588 3.58143 3.76347 3.82230 3.91802 3.92836 4.11894 4.18217 4.24357 4.40147 4.47917 4.48642 4.54672 4.60300 4.64066 4.67032 4.77113 4.78988 4.91092 5.02578 5.09120 5.24514 5.27520 5.31165 5.32745 5.50107 5.55655 5.59618 5.79680 5.87924 6.09555 6.29344 6.30296 6.32297 6.67577 7.03605 7.11479 7.78323 8.42149 9.27778 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.029771 B = 0.002042 C = 0.001987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 940.272637 B =13705.932748 C =14089.364243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.151 3.849 3 H 0.052 0.948 4 C 0.149 3.851 5 H 0.085 0.915 6 N -0.682 5.682 7 C 0.568 3.432 8 O -0.566 6.566 9 C 0.099 3.901 10 C -0.147 4.147 11 C 0.174 3.826 12 N -0.408 5.408 13 C -0.039 4.039 14 C -0.192 4.192 15 C -0.197 4.197 16 C -0.017 4.017 17 C -0.159 4.159 18 C 0.134 3.866 19 N -0.482 5.482 20 C -0.138 4.138 21 C 0.158 3.842 22 N -0.614 5.614 23 C -0.224 4.224 24 H 0.086 0.914 25 C -0.072 4.072 26 N -0.951 5.951 27 Si 0.979 3.021 28 H -0.264 1.264 29 H -0.297 1.297 30 H -0.293 1.293 31 H 0.038 0.962 32 H 0.049 0.951 33 H 0.069 0.931 34 H 0.418 0.582 35 H 0.145 0.855 36 H 0.169 0.831 37 H 0.156 0.844 38 H 0.164 0.836 39 H 0.200 0.800 40 H 0.186 0.814 41 H 0.213 0.787 42 H 0.068 0.932 43 H 0.068 0.932 44 H -0.012 1.012 45 H 0.079 0.921 46 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.157 13.356 -27.281 30.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.044 3.956 3 H 0.069 0.931 4 C 0.044 3.956 5 H 0.103 0.897 6 N -0.332 5.332 7 C 0.353 3.647 8 O -0.445 6.445 9 C -0.039 4.039 10 C -0.170 4.170 11 C 0.072 3.928 12 N -0.082 5.082 13 C -0.164 4.164 14 C -0.216 4.216 15 C -0.220 4.220 16 C -0.142 4.142 17 C -0.181 4.181 18 C -0.025 4.025 19 N -0.195 5.195 20 C -0.178 4.178 21 C 0.033 3.967 22 N -0.339 5.339 23 C -0.353 4.353 24 H 0.104 0.896 25 C -0.264 4.264 26 N -0.601 5.601 27 Si 0.808 3.192 28 H -0.189 1.189 29 H -0.224 1.224 30 H -0.220 1.220 31 H 0.057 0.943 32 H 0.069 0.931 33 H 0.088 0.912 34 H 0.257 0.743 35 H 0.162 0.838 36 H 0.186 0.814 37 H 0.174 0.826 38 H 0.181 0.819 39 H 0.217 0.783 40 H 0.203 0.797 41 H 0.230 0.770 42 H 0.086 0.914 43 H 0.087 0.913 44 H 0.006 0.994 45 H 0.097 0.903 46 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 1.903 12.782 -26.106 29.129 hybrid contribution -0.070 -0.569 0.453 0.730 sum 1.833 12.213 -25.653 28.471 Atomic orbital electron populations 1.22107 0.96260 1.00903 1.01255 1.21261 0.93661 0.95004 0.85655 0.93053 1.21857 0.96575 0.90767 0.86413 0.89682 1.45716 1.66610 1.15620 1.05294 1.18145 0.77307 0.86479 0.82756 1.90768 1.50865 1.20115 1.82773 1.20624 0.99867 0.91807 0.91565 1.21691 1.01896 1.01571 0.91852 1.18170 0.97177 0.94707 0.82721 1.41713 1.51998 1.10833 1.03668 1.22317 1.09653 0.88490 0.95953 1.21399 1.06771 0.99317 0.94109 1.21428 1.07435 0.94081 0.99084 1.22570 1.07455 0.98827 0.85328 1.22487 1.01530 0.94433 0.99645 1.23438 0.91704 0.99969 0.87436 1.67609 1.11134 1.01140 1.39608 1.23211 0.97467 0.99932 0.97196 1.21675 0.95821 0.87864 0.91381 1.44836 1.59641 1.28618 1.00817 1.19438 1.26130 1.08058 0.81637 0.89616 1.25627 1.00933 0.97809 1.01986 1.70045 1.40352 1.19061 1.30683 0.84986 0.76984 0.77407 0.79817 1.18858 1.22413 1.22025 0.94293 0.93139 0.91239 0.74342 0.83769 0.81353 0.82640 0.81859 0.78266 0.79704 0.77047 0.91360 0.91342 0.99415 0.90326 0.94467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.30 9.15 71.98 0.66 -4.64 16 2 C 0.15 6.00 3.50 45.25 0.16 6.16 16 3 H 0.05 1.95 7.70 -2.39 -0.02 1.93 16 4 C 0.15 5.49 2.79 46.18 0.13 5.61 16 5 H 0.09 3.33 7.33 -2.39 -0.02 3.32 16 6 N -0.68 -20.84 5.18 -439.46 -2.28 -23.12 16 7 C 0.57 17.68 7.81 86.89 0.68 18.36 16 8 O -0.57 -21.13 16.00 -3.74 -0.06 -21.19 16 9 C 0.10 2.44 6.75 41.86 0.28 2.72 16 10 C -0.15 -3.26 9.04 22.73 0.21 -3.06 16 11 C 0.17 2.95 6.65 38.36 0.26 3.21 16 12 N -0.41 -6.74 2.97 -346.09 -1.03 -7.76 16 13 C -0.04 -0.69 10.77 83.16 0.90 0.20 16 14 C -0.19 -2.96 10.86 22.15 0.24 -2.72 16 15 C -0.20 -2.54 10.86 22.15 0.24 -2.30 16 16 C -0.02 -0.21 10.77 83.16 0.90 0.69 16 17 C -0.16 -1.68 9.53 22.54 0.21 -1.47 16 18 C 0.13 1.59 11.17 84.75 0.95 2.54 16 19 N -0.48 -9.72 9.54 -185.13 -1.77 -11.49 16 20 C -0.14 -5.63 6.77 31.99 0.22 -5.41 16 21 C 0.16 8.01 5.89 86.86 0.51 8.52 16 22 N -0.61 -30.96 3.14 -667.15 -2.10 -33.06 16 23 C -0.22 -12.21 9.92 84.03 0.83 -11.38 16 24 H 0.09 4.44 7.83 -2.91 -0.02 4.42 16 25 C -0.07 -4.03 5.49 84.86 0.47 -3.56 16 26 N -0.95 -56.87 10.09 21.65 0.22 -56.65 16 27 Si 0.98 45.52 29.55 68.60 2.03 47.55 16 28 H -0.26 -11.46 7.11 99.48 0.71 -10.75 16 29 H -0.30 -13.97 7.11 99.48 0.71 -13.26 16 30 H -0.29 -13.62 7.11 99.48 0.71 -12.92 16 31 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 32 H 0.05 1.86 8.06 -2.39 -0.02 1.84 16 33 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 34 H 0.42 11.31 7.67 -92.71 -0.71 10.60 16 35 H 0.14 3.39 6.42 -2.91 -0.02 3.37 16 36 H 0.17 2.76 7.09 -2.91 -0.02 2.74 16 37 H 0.16 1.85 8.06 -2.91 -0.02 1.83 16 38 H 0.16 1.33 8.06 -2.91 -0.02 1.30 16 39 H 0.20 0.85 7.08 -2.91 -0.02 0.83 16 40 H 0.19 0.47 6.83 -2.91 -0.02 0.45 16 41 H 0.21 0.75 8.06 -2.91 -0.02 0.73 16 42 H 0.07 2.69 8.14 -2.39 -0.02 2.67 16 43 H 0.07 2.70 8.14 -2.39 -0.02 2.68 16 44 H -0.01 -0.67 8.14 -2.39 -0.02 -0.69 16 45 H 0.08 4.50 5.87 -2.39 -0.01 4.48 16 46 H 0.25 14.30 8.31 -92.71 -0.77 13.53 16 Total: -1.00 -72.74 380.57 3.15 -69.60 By element: Atomic # 1 Polarization: 22.35 SS G_CDS: 0.30 Total: 22.65 kcal Atomic # 6 Polarization: 5.65 SS G_CDS: 7.83 Total: 13.48 kcal Atomic # 7 Polarization: -125.14 SS G_CDS: -6.95 Total: -132.09 kcal Atomic # 8 Polarization: -21.13 SS G_CDS: -0.06 Total: -21.19 kcal Atomic # 14 Polarization: 45.52 SS G_CDS: 2.03 Total: 47.55 kcal Total: -72.74 3.15 -69.60 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088965713.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.665 kcal (2) G-P(sol) polarization free energy of solvation -72.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.596 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds