Wall clock time and date at job start Sat Apr 11 2020 06:07:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08994 * 110.64600 * 2 1 4 4 C 1.54324 * 110.72024 * 236.66330 * 2 1 3 5 5 N 1.47021 * 107.27325 * 219.44924 * 4 2 1 6 6 C 1.36938 * 125.65054 * 178.92200 * 5 4 2 7 7 H 1.07997 * 119.99752 * 174.86970 * 6 5 4 8 8 C 1.38805 * 119.99768 * 354.86666 * 6 5 4 9 9 N 1.31621 * 120.00437 * 7.06205 * 8 6 5 10 10 Si 1.86810 * 119.99875 * 187.06474 * 8 6 5 11 11 H 1.48495 * 109.46999 * 94.98563 * 10 8 6 12 12 H 1.48497 * 109.46675 * 214.98511 * 10 8 6 13 13 H 1.48501 * 109.46766 * 334.98444 * 10 8 6 14 14 C 1.47429 * 108.70108 * 358.93578 * 5 4 2 15 15 C 1.54907 * 104.83248 * 24.13567 * 14 5 4 16 16 H 1.08992 * 111.04056 * 81.07361 * 15 14 5 17 17 C 1.53006 * 111.00409 * 204.91582 * 15 14 5 18 18 N 1.46496 * 109.46925 * 287.19198 * 17 15 14 19 19 C 1.34773 * 120.00254 * 179.97438 * 18 17 15 20 20 O 1.21505 * 119.99591 * 0.02562 * 19 18 17 21 21 C 1.48277 * 120.00533 * 179.97438 * 19 18 17 22 22 C 1.40370 * 119.18918 * 179.97438 * 21 19 18 23 23 C 1.36553 * 119.82187 * 179.97438 * 22 21 19 24 24 C 1.40553 * 118.06473 * 0.04018 * 23 22 21 25 25 C 1.40512 * 122.21070 * 179.97438 * 24 23 22 26 26 C 1.36263 * 118.68683 * 180.29410 * 25 24 23 27 27 N 1.32587 * 121.79486 * 359.43174 * 26 25 24 28 28 C 1.31118 * 122.87989 * 0.58974 * 27 26 25 29 29 C 1.40861 * 119.95481 * 359.71218 * 28 27 26 30 30 N 1.31898 * 119.18438 * 0.02562 * 21 19 18 31 31 H 1.09000 * 109.47081 * 296.86215 * 1 2 3 32 32 H 1.09005 * 109.46615 * 56.85677 * 1 2 3 33 33 H 1.08993 * 109.47294 * 176.85936 * 1 2 3 34 34 H 1.09004 * 109.87816 * 338.86180 * 4 2 1 35 35 H 1.09000 * 109.88375 * 99.87357 * 4 2 1 36 36 H 0.96999 * 120.00276 * 180.02562 * 9 8 6 37 37 H 1.08994 * 110.36846 * 265.28968 * 14 5 4 38 38 H 1.09007 * 110.36369 * 142.96760 * 14 5 4 39 39 H 1.08996 * 109.46911 * 167.18876 * 17 15 14 40 40 H 1.08999 * 109.46786 * 47.19569 * 17 15 14 41 41 H 0.96999 * 120.00051 * 359.97438 * 18 17 15 42 42 H 1.07999 * 120.08716 * 359.97438 * 22 21 19 43 43 H 1.08004 * 120.96748 * 180.02562 * 23 22 21 44 44 H 1.08005 * 120.66227 * 0.02798 * 25 24 23 45 45 H 1.07995 * 119.10262 * 179.69780 * 26 25 24 46 46 H 1.07998 * 120.02000 * 179.68834 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9143 1.0199 0.0000 4 6 2.0760 -0.7932 -1.2059 5 7 3.2444 -1.5521 -0.7364 6 6 4.0036 -2.4005 -1.4974 7 1 4.8935 -2.8491 -1.0813 8 6 3.6292 -2.6838 -2.8037 9 7 2.6275 -2.0336 -3.3571 10 14 4.5471 -3.9881 -3.7763 11 1 3.8310 -5.2841 -3.6649 12 1 4.6182 -3.5828 -5.2032 13 1 5.9219 -4.1339 -3.2340 14 6 3.4632 -1.2487 0.6897 15 6 2.0789 -0.7935 1.2152 16 1 1.4448 -1.6507 1.4407 17 6 2.2278 0.1121 2.4394 18 7 2.6328 -0.6919 3.5951 19 6 2.8259 -0.1026 4.7917 20 8 2.6637 1.0956 4.9120 21 6 3.2353 -0.9164 5.9616 22 6 3.4323 -0.2849 7.1997 23 6 3.8088 -1.0220 8.2857 24 6 3.9874 -2.4057 8.1161 25 6 4.3741 -3.2463 9.1736 26 6 4.5323 -4.5771 8.9271 27 7 4.3208 -5.0949 7.7250 28 6 3.9588 -4.3724 6.6924 29 6 3.7728 -2.9836 6.8362 30 7 3.4063 -2.2158 5.8131 31 1 -0.3633 0.4643 0.9168 32 1 -0.3633 0.5619 -0.8605 33 1 -0.3633 -1.0260 -0.0563 34 1 1.3129 -1.4785 -1.5750 35 1 2.3716 -0.1060 -1.9986 36 1 2.3657 -2.2319 -4.2698 37 1 4.1931 -0.4467 0.7992 38 1 3.7959 -2.1407 1.2206 39 1 1.2749 0.5974 2.6503 40 1 2.9854 0.8701 2.2406 41 1 2.7619 -1.6485 3.4992 42 1 3.2864 0.7812 7.2929 43 1 3.9651 -0.5552 9.2471 44 1 4.5468 -2.8449 10.1613 45 1 4.8341 -5.2284 9.7339 46 1 3.8038 -4.8418 5.7322 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001092832147.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:36 Heat of formation + Delta-G solvation = 53.174879 kcal Electronic energy + Delta-G solvation = -28345.305682 eV Core-core repulsion = 24428.417836 eV Total energy + Delta-G solvation = -3916.887847 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.69739 -39.88760 -38.33192 -37.76902 -34.87905 -34.20563 -32.92671 -31.98298 -31.00923 -30.71515 -29.27591 -26.41329 -25.78878 -25.08443 -24.51033 -23.13995 -22.78988 -21.20081 -20.03585 -19.49808 -18.82767 -18.23592 -17.87482 -16.80049 -16.43348 -15.92769 -15.70279 -15.29647 -15.13066 -14.84480 -14.69897 -14.42598 -14.14792 -13.77865 -13.56076 -13.45395 -13.36172 -12.91641 -12.81631 -12.53686 -12.50888 -11.83434 -11.68221 -11.36471 -11.32634 -11.21915 -10.87178 -10.79199 -10.77484 -10.21255 -10.05659 -9.97649 -9.92872 -9.88856 -9.77055 -9.69080 -9.55953 -9.06026 -8.89499 -8.56188 -6.80880 -5.70865 -3.02969 -0.39851 0.10877 1.32388 2.10468 2.92497 3.00318 3.41410 3.46793 3.48632 3.55415 3.66517 3.90112 4.01031 4.17483 4.25869 4.40575 4.51008 4.68933 4.82367 5.05219 5.08774 5.18817 5.20881 5.28005 5.33502 5.40449 5.54240 5.56320 5.65097 5.76001 5.83989 5.85661 6.03101 6.07500 6.09398 6.19628 6.28644 6.38312 6.49286 6.60534 6.63944 6.76201 6.95885 7.03479 7.44408 7.51966 7.58383 7.66362 7.85421 8.05669 8.27670 9.23653 9.84221 10.50752 11.41194 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.012205 B = 0.002560 C = 0.002193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2293.582849 B =10935.892198 C =12764.740251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.110 4.110 3 H 0.068 0.932 4 C 0.183 3.817 5 N -0.606 5.606 6 C -0.228 4.228 7 H 0.077 0.923 8 C -0.007 4.007 9 N -0.920 5.920 10 Si 0.909 3.091 11 H -0.289 1.289 12 H -0.292 1.292 13 H -0.281 1.281 14 C 0.141 3.859 15 C -0.113 4.113 16 H 0.082 0.918 17 C 0.130 3.870 18 N -0.698 5.698 19 C 0.565 3.435 20 O -0.534 6.534 21 C 0.121 3.879 22 C -0.106 4.106 23 C -0.067 4.067 24 C -0.064 4.064 25 C -0.150 4.150 26 C 0.083 3.917 27 N -0.476 5.476 28 C 0.180 3.820 29 C 0.065 3.935 30 N -0.422 5.422 31 H 0.044 0.956 32 H 0.053 0.947 33 H 0.054 0.946 34 H 0.050 0.950 35 H 0.040 0.960 36 H 0.252 0.748 37 H 0.018 0.982 38 H 0.038 0.962 39 H 0.070 0.930 40 H 0.072 0.928 41 H 0.413 0.587 42 H 0.156 0.844 43 H 0.151 0.849 44 H 0.143 0.857 45 H 0.160 0.840 46 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.406 1.121 25.960 25.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.130 4.130 3 H 0.086 0.914 4 C 0.058 3.942 5 N -0.332 5.332 6 C -0.357 4.357 7 H 0.095 0.905 8 C -0.204 4.204 9 N -0.567 5.567 10 Si 0.740 3.260 11 H -0.216 1.216 12 H -0.218 1.218 13 H -0.206 1.206 14 C 0.015 3.985 15 C -0.133 4.133 16 H 0.100 0.900 17 C 0.006 3.994 18 N -0.349 5.349 19 C 0.348 3.652 20 O -0.410 6.410 21 C -0.033 4.033 22 C -0.128 4.128 23 C -0.093 4.093 24 C -0.071 4.071 25 C -0.170 4.170 26 C -0.059 4.059 27 N -0.185 5.185 28 C 0.006 3.994 29 C -0.061 4.061 30 N -0.135 5.135 31 H 0.063 0.937 32 H 0.072 0.928 33 H 0.073 0.927 34 H 0.068 0.932 35 H 0.058 0.942 36 H 0.062 0.938 37 H 0.036 0.964 38 H 0.056 0.944 39 H 0.088 0.912 40 H 0.090 0.910 41 H 0.250 0.750 42 H 0.174 0.826 43 H 0.169 0.831 44 H 0.161 0.839 45 H 0.177 0.823 46 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -0.479 0.510 25.025 25.035 hybrid contribution 0.593 0.162 0.336 0.701 sum 0.115 0.672 25.361 25.370 Atomic orbital electron populations 1.21700 0.95306 1.01662 1.00543 1.22438 0.95161 0.99090 0.96279 0.91391 1.21228 0.89261 0.93019 0.90698 1.44462 1.32762 1.51447 1.04542 1.19056 1.04468 1.18267 0.93863 0.90469 1.24812 0.98532 0.99902 0.97114 1.69975 1.30221 1.42674 1.13852 0.86135 0.78910 0.81616 0.79359 1.21621 1.21813 1.20649 1.21594 0.92921 0.97160 0.86827 1.22685 0.99586 0.98088 0.92935 0.89973 1.21528 1.00376 0.93852 0.83605 1.45965 1.67131 1.13191 1.08572 1.17825 0.78212 0.86629 0.82530 1.90793 1.51923 1.13865 1.84398 1.21563 0.97397 0.89941 0.94448 1.21914 0.96463 1.02758 0.91631 1.21430 0.96213 0.91857 0.99790 1.19093 0.98246 0.95106 0.94685 1.21909 1.01149 0.94684 0.99265 1.22376 0.95744 0.93405 0.94395 1.67551 1.11177 1.39965 0.99767 1.23337 0.90415 0.87532 0.98148 1.19908 1.00850 0.96030 0.89262 1.67779 1.08845 1.05012 1.31829 0.93667 0.92762 0.92678 0.93150 0.94223 0.93782 0.96397 0.94393 0.91217 0.90966 0.75044 0.82600 0.83133 0.83893 0.82309 0.80451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.07 9.16 37.16 0.34 -1.73 16 2 C -0.11 -1.96 3.02 -88.78 -0.27 -2.23 16 3 H 0.07 1.17 8.04 -51.93 -0.42 0.75 16 4 C 0.18 4.35 4.98 -3.06 -0.02 4.33 16 5 N -0.61 -15.31 3.39 -170.07 -0.58 -15.89 16 6 C -0.23 -6.35 10.27 -15.06 -0.15 -6.51 16 7 H 0.08 2.08 7.84 -52.49 -0.41 1.67 16 8 C -0.01 -0.21 5.48 -17.43 -0.10 -0.30 16 9 N -0.92 -26.96 10.36 55.49 0.57 -26.39 16 10 Si 0.91 22.12 29.56 -169.99 -5.02 17.09 16 11 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 12 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 13 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 14 C 0.14 2.84 6.65 -2.53 -0.02 2.82 16 15 C -0.11 -1.86 2.50 -88.47 -0.22 -2.08 16 16 H 0.08 1.35 8.05 -51.93 -0.42 0.93 16 17 C 0.13 1.85 5.13 -4.04 -0.02 1.82 16 18 N -0.70 -9.29 5.49 -61.11 -0.34 -9.63 16 19 C 0.56 7.69 7.81 -12.13 -0.09 7.59 16 20 O -0.53 -8.46 16.28 5.36 0.09 -8.37 16 21 C 0.12 1.42 6.75 -82.91 -0.56 0.86 16 22 C -0.11 -0.98 9.54 -39.39 -0.38 -1.35 16 23 C -0.07 -0.49 9.93 -39.32 -0.39 -0.88 16 24 C -0.06 -0.56 5.75 -106.71 -0.61 -1.17 16 25 C -0.15 -0.98 9.88 -39.44 -0.39 -1.36 16 26 C 0.08 0.61 11.07 -17.94 -0.20 0.41 16 27 N -0.48 -4.63 10.28 -13.05 -0.13 -4.76 16 28 C 0.18 1.75 11.26 -16.86 -0.19 1.56 16 29 C 0.07 0.68 6.62 -84.88 -0.56 0.12 16 30 N -0.42 -4.88 9.49 -7.51 -0.07 -4.95 16 31 H 0.04 0.59 8.10 -51.93 -0.42 0.17 16 32 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.05 0.87 8.06 -51.93 -0.42 0.46 16 34 H 0.05 1.33 6.92 -51.93 -0.36 0.97 16 35 H 0.04 1.06 7.61 -51.93 -0.40 0.66 16 36 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 37 H 0.02 0.37 7.91 -51.93 -0.41 -0.04 16 38 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.07 0.96 8.10 -51.93 -0.42 0.54 16 40 H 0.07 1.09 7.96 -51.93 -0.41 0.67 16 41 H 0.41 5.21 7.77 -40.82 -0.32 4.89 16 42 H 0.16 1.28 7.60 -52.49 -0.40 0.88 16 43 H 0.15 0.56 8.06 -52.48 -0.42 0.14 16 44 H 0.14 0.48 8.06 -52.48 -0.42 0.05 16 45 H 0.16 0.70 8.06 -52.49 -0.42 0.28 16 46 H 0.18 1.46 8.06 -52.49 -0.42 1.03 16 LS Contribution 382.74 15.07 5.77 5.77 Total: -1.00 -33.24 382.74 -10.01 -43.26 By element: Atomic # 1 Polarization: 8.44 SS G_CDS: -6.47 Total: 1.97 kcal Atomic # 6 Polarization: 5.73 SS G_CDS: -3.83 Total: 1.90 kcal Atomic # 7 Polarization: -61.07 SS G_CDS: -0.54 Total: -61.62 kcal Atomic # 8 Polarization: -8.46 SS G_CDS: 0.09 Total: -8.37 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -33.24 -10.01 -43.26 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001092832147.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.431 kcal (2) G-P(sol) polarization free energy of solvation -33.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.257 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds