Wall clock time and date at job start Sat Apr 11 2020 06:07:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08994 * 110.64600 * 2 1 4 4 C 1.54324 * 110.72024 * 236.66330 * 2 1 3 5 5 N 1.47021 * 107.27325 * 219.44924 * 4 2 1 6 6 C 1.36938 * 125.65054 * 178.92200 * 5 4 2 7 7 H 1.07997 * 119.99752 * 174.86970 * 6 5 4 8 8 C 1.38805 * 119.99768 * 354.86666 * 6 5 4 9 9 N 1.31621 * 120.00437 * 7.06205 * 8 6 5 10 10 Si 1.86810 * 119.99875 * 187.06474 * 8 6 5 11 11 H 1.48495 * 109.46999 * 94.98563 * 10 8 6 12 12 H 1.48497 * 109.46675 * 214.98511 * 10 8 6 13 13 H 1.48501 * 109.46766 * 334.98444 * 10 8 6 14 14 C 1.47429 * 108.70108 * 358.93578 * 5 4 2 15 15 C 1.54907 * 104.83248 * 24.13567 * 14 5 4 16 16 H 1.08992 * 111.04056 * 81.07361 * 15 14 5 17 17 C 1.53006 * 111.00409 * 204.91582 * 15 14 5 18 18 N 1.46496 * 109.46925 * 287.19198 * 17 15 14 19 19 C 1.34773 * 120.00254 * 179.97438 * 18 17 15 20 20 O 1.21505 * 119.99591 * 0.02562 * 19 18 17 21 21 C 1.48277 * 120.00533 * 179.97438 * 19 18 17 22 22 C 1.40370 * 119.18918 * 179.97438 * 21 19 18 23 23 C 1.36553 * 119.82187 * 179.97438 * 22 21 19 24 24 C 1.40553 * 118.06473 * 0.04018 * 23 22 21 25 25 C 1.40512 * 122.21070 * 179.97438 * 24 23 22 26 26 C 1.36263 * 118.68683 * 180.29410 * 25 24 23 27 27 N 1.32587 * 121.79486 * 359.43174 * 26 25 24 28 28 C 1.31118 * 122.87989 * 0.58974 * 27 26 25 29 29 C 1.40861 * 119.95481 * 359.71218 * 28 27 26 30 30 N 1.31898 * 119.18438 * 0.02562 * 21 19 18 31 31 H 1.09000 * 109.47081 * 296.86215 * 1 2 3 32 32 H 1.09005 * 109.46615 * 56.85677 * 1 2 3 33 33 H 1.08993 * 109.47294 * 176.85936 * 1 2 3 34 34 H 1.09004 * 109.87816 * 338.86180 * 4 2 1 35 35 H 1.09000 * 109.88375 * 99.87357 * 4 2 1 36 36 H 0.96999 * 120.00276 * 180.02562 * 9 8 6 37 37 H 1.08994 * 110.36846 * 265.28968 * 14 5 4 38 38 H 1.09007 * 110.36369 * 142.96760 * 14 5 4 39 39 H 1.08996 * 109.46911 * 167.18876 * 17 15 14 40 40 H 1.08999 * 109.46786 * 47.19569 * 17 15 14 41 41 H 0.96999 * 120.00051 * 359.97438 * 18 17 15 42 42 H 1.07999 * 120.08716 * 359.97438 * 22 21 19 43 43 H 1.08004 * 120.96748 * 180.02562 * 23 22 21 44 44 H 1.08005 * 120.66227 * 0.02798 * 25 24 23 45 45 H 1.07995 * 119.10262 * 179.69780 * 26 25 24 46 46 H 1.07998 * 120.02000 * 179.68834 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9143 1.0199 0.0000 4 6 2.0760 -0.7932 -1.2059 5 7 3.2444 -1.5521 -0.7364 6 6 4.0036 -2.4005 -1.4974 7 1 4.8935 -2.8491 -1.0813 8 6 3.6292 -2.6838 -2.8037 9 7 2.6275 -2.0336 -3.3571 10 14 4.5471 -3.9881 -3.7763 11 1 3.8310 -5.2841 -3.6649 12 1 4.6182 -3.5828 -5.2032 13 1 5.9219 -4.1339 -3.2340 14 6 3.4632 -1.2487 0.6897 15 6 2.0789 -0.7935 1.2152 16 1 1.4448 -1.6507 1.4407 17 6 2.2278 0.1121 2.4394 18 7 2.6328 -0.6919 3.5951 19 6 2.8259 -0.1026 4.7917 20 8 2.6637 1.0956 4.9120 21 6 3.2353 -0.9164 5.9616 22 6 3.4323 -0.2849 7.1997 23 6 3.8088 -1.0220 8.2857 24 6 3.9874 -2.4057 8.1161 25 6 4.3741 -3.2463 9.1736 26 6 4.5323 -4.5771 8.9271 27 7 4.3208 -5.0949 7.7250 28 6 3.9588 -4.3724 6.6924 29 6 3.7728 -2.9836 6.8362 30 7 3.4063 -2.2158 5.8131 31 1 -0.3633 0.4643 0.9168 32 1 -0.3633 0.5619 -0.8605 33 1 -0.3633 -1.0260 -0.0563 34 1 1.3129 -1.4785 -1.5750 35 1 2.3716 -0.1060 -1.9986 36 1 2.3657 -2.2319 -4.2698 37 1 4.1931 -0.4467 0.7992 38 1 3.7959 -2.1407 1.2206 39 1 1.2749 0.5974 2.6503 40 1 2.9854 0.8701 2.2406 41 1 2.7619 -1.6485 3.4992 42 1 3.2864 0.7812 7.2929 43 1 3.9651 -0.5552 9.2471 44 1 4.5468 -2.8449 10.1613 45 1 4.8341 -5.2284 9.7339 46 1 3.8038 -4.8418 5.7322 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001092832147.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:35 Heat of formation + Delta-G solvation = 31.071832 kcal Electronic energy + Delta-G solvation = -28346.264143 eV Core-core repulsion = 24428.417836 eV Total energy + Delta-G solvation = -3917.846307 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.38180 -40.89938 -39.66754 -38.74587 -36.16673 -35.02648 -34.57051 -32.70186 -32.54187 -31.70974 -30.64042 -27.93479 -27.16467 -26.23674 -25.38819 -24.34010 -23.74993 -22.27636 -21.60887 -20.92926 -19.71105 -19.14124 -18.71857 -18.52926 -17.35747 -17.09512 -16.68385 -16.61739 -16.03724 -15.93091 -15.73082 -15.57074 -15.30656 -15.05809 -14.74310 -14.51425 -14.30388 -14.15661 -14.10446 -13.69609 -13.43245 -13.24512 -13.10239 -13.08192 -12.86717 -12.68809 -12.41399 -11.95203 -11.95035 -11.87013 -11.78588 -11.55908 -11.37494 -11.32283 -10.86161 -10.67981 -10.53761 -10.49729 -10.13442 -9.52120 -8.88373 -7.85583 -5.19781 -1.06910 -0.55492 0.68140 1.32486 1.45526 1.47327 1.56112 1.94320 2.17845 2.49456 2.76715 2.97229 3.31926 3.32023 3.44280 3.51678 3.60756 3.62504 3.72226 3.82821 3.93369 3.95775 4.07107 4.28016 4.37054 4.49583 4.50973 4.60520 4.62938 4.70441 4.74151 4.77396 4.84078 4.85884 4.97350 5.04685 5.09364 5.14689 5.26052 5.30678 5.37085 5.45739 5.48914 5.51139 5.72365 5.82746 6.20834 6.22210 6.51593 6.85349 7.01494 7.11207 7.78687 8.43625 9.25141 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.012205 B = 0.002560 C = 0.002193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2293.582849 B =10935.892198 C =12764.740251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.099 4.099 3 H 0.078 0.922 4 C 0.190 3.810 5 N -0.629 5.629 6 C -0.243 4.243 7 H 0.080 0.920 8 C -0.065 4.065 9 N -0.949 5.949 10 Si 0.976 3.024 11 H -0.286 1.286 12 H -0.295 1.295 13 H -0.269 1.269 14 C 0.137 3.863 15 C -0.091 4.091 16 H 0.087 0.913 17 C 0.142 3.858 18 N -0.698 5.698 19 C 0.566 3.434 20 O -0.559 6.559 21 C 0.104 3.896 22 C -0.119 4.119 23 C -0.044 4.044 24 C -0.077 4.077 25 C -0.132 4.132 26 C 0.070 3.930 27 N -0.493 5.493 28 C 0.161 3.839 29 C 0.045 3.955 30 N -0.440 5.440 31 H 0.077 0.923 32 H 0.055 0.945 33 H 0.046 0.954 34 H 0.018 0.982 35 H -0.001 1.001 36 H 0.247 0.753 37 H 0.018 0.982 38 H 0.043 0.957 39 H 0.084 0.916 40 H 0.066 0.934 41 H 0.416 0.584 42 H 0.164 0.836 43 H 0.195 0.805 44 H 0.185 0.815 45 H 0.189 0.811 46 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.001 1.102 29.641 29.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.119 4.119 3 H 0.096 0.904 4 C 0.065 3.935 5 N -0.355 5.355 6 C -0.372 4.372 7 H 0.098 0.902 8 C -0.258 4.258 9 N -0.598 5.598 10 Si 0.804 3.196 11 H -0.213 1.213 12 H -0.222 1.222 13 H -0.193 1.193 14 C 0.012 3.988 15 C -0.111 4.111 16 H 0.105 0.895 17 C 0.018 3.982 18 N -0.348 5.348 19 C 0.351 3.649 20 O -0.437 6.437 21 C -0.050 4.050 22 C -0.141 4.141 23 C -0.070 4.070 24 C -0.084 4.084 25 C -0.152 4.152 26 C -0.071 4.071 27 N -0.202 5.202 28 C -0.012 4.012 29 C -0.081 4.081 30 N -0.153 5.153 31 H 0.096 0.904 32 H 0.074 0.926 33 H 0.065 0.935 34 H 0.036 0.964 35 H 0.017 0.983 36 H 0.056 0.944 37 H 0.036 0.964 38 H 0.062 0.938 39 H 0.102 0.898 40 H 0.085 0.915 41 H 0.253 0.747 42 H 0.182 0.818 43 H 0.212 0.788 44 H 0.202 0.798 45 H 0.206 0.794 46 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -0.061 0.482 28.736 28.740 hybrid contribution 0.545 0.118 -0.692 0.888 sum 0.484 0.600 28.044 28.055 Atomic orbital electron populations 1.21648 0.92934 1.01622 1.02313 1.22313 0.97017 0.98639 0.93947 0.90355 1.21005 0.88196 0.91919 0.92345 1.44794 1.32804 1.51268 1.06629 1.19439 1.04880 1.18416 0.94454 0.90188 1.25647 0.99815 1.02044 0.98288 1.70197 1.31803 1.44017 1.13746 0.85097 0.78243 0.78815 0.77429 1.21291 1.22195 1.19330 1.21756 0.95157 0.97387 0.84475 1.22471 0.96997 0.98350 0.93268 0.89494 1.21314 1.00990 0.93039 0.82847 1.45912 1.67186 1.13248 1.08457 1.18114 0.77406 0.86500 0.82898 1.90768 1.53137 1.14936 1.84887 1.21397 0.98975 0.90071 0.94594 1.22034 0.97412 1.03332 0.91317 1.21877 0.93409 0.90958 1.00756 1.19430 0.98273 0.96206 0.94509 1.22325 0.98671 0.93935 1.00245 1.22947 0.95422 0.94596 0.94182 1.67554 1.11313 1.40667 1.00710 1.23381 0.91550 0.87651 0.98608 1.20106 1.01624 0.96219 0.90161 1.67659 1.09628 1.05169 1.32884 0.90418 0.92610 0.93479 0.96403 0.98289 0.94410 0.96411 0.93828 0.89782 0.91536 0.74701 0.81821 0.78839 0.79800 0.79410 0.80428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.77 9.16 71.98 0.66 -3.11 16 2 C -0.10 -3.54 3.02 -9.60 -0.03 -3.57 16 3 H 0.08 2.65 8.04 -2.39 -0.02 2.63 16 4 C 0.19 9.44 4.98 86.73 0.43 9.88 16 5 N -0.63 -32.72 3.39 -691.99 -2.35 -35.07 16 6 C -0.24 -13.86 10.27 84.03 0.86 -12.99 16 7 H 0.08 4.38 7.84 -2.91 -0.02 4.36 16 8 C -0.06 -3.75 5.48 84.86 0.46 -3.29 16 9 N -0.95 -57.88 10.36 21.65 0.22 -57.65 16 10 Si 0.98 46.44 29.56 68.60 2.03 48.47 16 11 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 12 H -0.30 -14.12 7.11 99.48 0.71 -13.41 16 13 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 14 C 0.14 5.56 6.65 86.85 0.58 6.14 16 15 C -0.09 -2.95 2.50 -9.40 -0.02 -2.97 16 16 H 0.09 2.77 8.05 -2.39 -0.02 2.75 16 17 C 0.14 3.85 5.13 86.38 0.44 4.30 16 18 N -0.70 -18.13 5.49 -465.56 -2.55 -20.68 16 19 C 0.57 15.11 7.81 86.91 0.68 15.79 16 20 O -0.56 -17.33 16.28 -3.73 -0.06 -17.39 16 21 C 0.10 2.36 6.75 42.33 0.29 2.64 16 22 C -0.12 -1.98 9.54 22.39 0.21 -1.77 16 23 C -0.04 -0.49 9.93 22.44 0.22 -0.27 16 24 C -0.08 -1.13 5.75 -21.21 -0.12 -1.25 16 25 C -0.13 -1.20 9.88 22.36 0.22 -0.98 16 26 C 0.07 0.83 11.07 84.12 0.93 1.76 16 27 N -0.49 -9.05 10.28 -195.21 -2.01 -11.05 16 28 C 0.16 3.14 11.26 85.44 0.96 4.10 16 29 C 0.04 0.90 6.62 40.54 0.27 1.17 16 30 N -0.44 -10.11 9.49 -177.68 -1.69 -11.80 16 31 H 0.08 1.82 8.10 -2.39 -0.02 1.80 16 32 H 0.05 1.63 8.14 -2.38 -0.02 1.61 16 33 H 0.05 1.46 8.06 -2.39 -0.02 1.44 16 34 H 0.02 0.99 6.92 -2.39 -0.02 0.97 16 35 H 0.00 -0.06 7.61 -2.39 -0.02 -0.08 16 36 H 0.25 14.61 8.31 -92.71 -0.77 13.84 16 37 H 0.02 0.74 7.91 -2.39 -0.02 0.72 16 38 H 0.04 1.70 8.14 -2.38 -0.02 1.68 16 39 H 0.08 2.11 8.10 -2.39 -0.02 2.09 16 40 H 0.07 1.93 7.96 -2.39 -0.02 1.91 16 41 H 0.42 10.39 7.77 -92.71 -0.72 9.67 16 42 H 0.16 2.38 7.60 -2.91 -0.02 2.36 16 43 H 0.19 0.38 8.06 -2.91 -0.02 0.36 16 44 H 0.18 0.13 8.06 -2.91 -0.02 0.11 16 45 H 0.19 0.97 8.06 -2.91 -0.02 0.95 16 46 H 0.18 3.11 8.06 -2.91 -0.02 3.09 16 Total: -1.00 -75.75 382.74 0.93 -74.82 By element: Atomic # 1 Polarization: 14.50 SS G_CDS: 0.28 Total: 14.78 kcal Atomic # 6 Polarization: 8.52 SS G_CDS: 7.05 Total: 15.57 kcal Atomic # 7 Polarization: -127.88 SS G_CDS: -8.37 Total: -136.25 kcal Atomic # 8 Polarization: -17.33 SS G_CDS: -0.06 Total: -17.39 kcal Atomic # 14 Polarization: 46.44 SS G_CDS: 2.03 Total: 48.47 kcal Total: -75.75 0.93 -74.82 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001092832147.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.894 kcal (2) G-P(sol) polarization free energy of solvation -75.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.822 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds