Wall clock time and date at job start Sat Apr 11 2020 06:07:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 110.88143 * 2 1 4 4 C 1.54911 * 111.00433 * 236.11915 * 2 1 3 5 5 N 1.47425 * 104.92791 * 204.85944 * 4 2 1 6 6 C 1.36931 * 125.64952 * 204.15485 * 5 4 2 7 7 H 1.08005 * 120.00318 * 180.02562 * 6 5 4 8 8 C 1.38813 * 119.99987 * 0.02632 * 6 5 4 9 9 N 1.31614 * 120.00028 * 359.97438 * 8 6 5 10 10 Si 1.86793 * 119.99920 * 180.02562 * 8 6 5 11 11 H 1.48502 * 109.47509 * 59.99890 * 10 8 6 12 12 H 1.48504 * 109.47135 * 179.97438 * 10 8 6 13 13 H 1.48500 * 109.47281 * 299.99768 * 10 8 6 14 14 C 1.47297 * 108.55693 * 24.15151 * 5 4 2 15 15 C 1.54321 * 107.30797 * 358.92777 * 14 5 4 16 16 H 1.09003 * 110.72104 * 96.17659 * 15 14 5 17 17 C 1.52993 * 110.72152 * 219.45064 * 15 14 5 18 18 N 1.46503 * 109.47331 * 288.52453 * 17 15 14 19 19 C 1.34770 * 120.00355 * 180.02562 * 18 17 15 20 20 O 1.21529 * 119.99713 * 359.97438 * 19 18 17 21 21 C 1.47997 * 120.00412 * 179.97438 * 19 18 17 22 22 C 1.38901 * 121.16918 * 354.22558 * 21 19 18 23 23 C 1.39349 * 119.67386 * 179.97438 * 22 21 19 24 24 N 1.31103 * 121.90183 * 359.97438 * 23 22 21 25 25 C 1.33277 * 121.61706 * 0.02562 * 24 23 22 26 26 C 1.40840 * 121.90694 * 179.97438 * 25 24 23 27 27 C 1.36164 * 118.76967 * 180.02562 * 26 25 24 28 28 N 1.32549 * 121.95631 * 0.02655 * 27 26 25 29 29 C 1.31333 * 122.60320 * 359.97438 * 28 27 26 30 30 C 1.40086 * 119.88012 * 359.73983 * 29 28 27 31 31 H 1.08998 * 109.47093 * 182.42997 * 1 2 3 32 32 H 1.08998 * 109.47350 * 302.42765 * 1 2 3 33 33 H 1.09001 * 109.47427 * 62.43199 * 1 2 3 34 34 H 1.08999 * 110.36501 * 323.74910 * 4 2 1 35 35 H 1.08992 * 110.36545 * 85.96599 * 4 2 1 36 36 H 0.96998 * 120.00285 * 180.02562 * 9 8 6 37 37 H 1.08999 * 109.85708 * 239.49954 * 14 5 4 38 38 H 1.09008 * 109.86925 * 118.36046 * 14 5 4 39 39 H 1.09000 * 109.47169 * 48.51968 * 17 15 14 40 40 H 1.09001 * 109.47504 * 168.52045 * 17 15 14 41 41 H 0.97001 * 119.99549 * 359.97438 * 18 17 15 42 42 H 1.08003 * 120.16066 * 359.95312 * 22 21 19 43 43 H 1.08001 * 119.04506 * 179.97438 * 23 22 21 44 44 H 1.07998 * 120.61608 * 359.97438 * 26 25 24 45 45 H 1.08002 * 119.02408 * 180.02562 * 27 26 25 46 46 H 1.08008 * 120.06196 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9185 1.0184 0.0000 4 6 2.0852 -0.8062 -1.2006 5 7 3.4280 -1.2427 -0.7765 6 6 4.4636 -1.5645 -1.6125 7 1 5.4130 -1.8750 -1.2015 8 6 4.2935 -1.4916 -2.9882 9 7 3.1365 -1.1137 -3.4891 10 14 5.7061 -1.9312 -4.1286 11 1 6.1138 -3.3394 -3.8917 12 1 5.2707 -1.7732 -5.5396 13 1 6.8566 -1.0312 -3.8613 14 6 3.4674 -1.2742 0.6956 15 6 2.0862 -0.8083 1.2020 16 1 1.4468 -1.6636 1.4204 17 6 2.2349 0.0868 2.4338 18 7 2.6469 -0.7258 3.5811 19 6 2.8402 -0.1466 4.7825 20 8 2.6732 1.0500 4.9141 21 6 3.2558 -0.9676 5.9416 22 6 3.3388 -2.3511 5.8499 23 6 3.7341 -3.0936 6.9608 24 7 4.0345 -2.5248 8.1032 25 6 3.9767 -1.2028 8.2620 26 6 4.2976 -0.5854 9.4865 27 6 4.2161 0.7707 9.5779 28 7 3.8444 1.5219 8.5510 29 6 3.5310 1.0155 7.3805 30 6 3.5885 -0.3700 7.1815 31 1 -0.3633 -1.0267 0.0436 32 1 -0.3634 0.5510 0.8674 33 1 -0.3634 0.4756 -0.9110 34 1 1.4519 -1.6699 -1.4030 35 1 2.1541 -0.1718 -2.0842 36 1 3.0174 -1.0631 -4.4504 37 1 4.2426 -0.6000 1.0597 38 1 3.6651 -2.2897 1.0393 39 1 2.9888 0.8498 2.2397 40 1 1.2806 0.5662 2.6521 41 1 2.7797 -1.6809 3.4761 42 1 3.0978 -2.8488 4.9222 43 1 3.7948 -4.1688 6.8782 44 1 4.6018 -1.1767 10.3375 45 1 4.4616 1.2484 10.5148 46 1 3.2330 1.6663 6.5716 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001092858276.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:39 Heat of formation + Delta-G solvation = 59.763706 kcal Electronic energy + Delta-G solvation = -28548.520087 eV Core-core repulsion = 24631.917953 eV Total energy + Delta-G solvation = -3916.602134 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.72899 -39.82686 -38.34970 -38.08588 -35.02360 -33.97716 -33.03210 -31.90772 -30.95842 -30.79879 -29.33647 -26.38294 -25.78542 -25.03999 -24.52870 -23.70203 -22.61710 -21.25899 -19.98633 -19.58950 -18.82254 -18.34481 -17.64220 -16.89284 -16.40259 -16.12710 -15.76869 -15.35253 -15.12326 -14.89528 -14.79705 -14.55490 -14.25694 -13.83424 -13.64682 -13.42269 -13.25819 -13.11540 -12.85495 -12.70932 -12.37096 -12.01685 -11.62254 -11.55987 -11.23523 -10.99576 -10.95298 -10.83549 -10.75423 -10.30515 -10.13087 -10.08755 -9.99077 -9.85663 -9.73822 -9.61289 -9.44945 -9.27347 -8.86166 -8.70524 -6.90109 -5.70788 -3.12955 -0.44069 0.27843 1.18898 2.42547 2.73961 2.85170 3.36606 3.41152 3.42273 3.70919 3.72421 4.01980 4.11475 4.16408 4.29763 4.32737 4.43331 4.77262 4.91206 4.92284 5.07498 5.11485 5.16655 5.19281 5.35098 5.43253 5.49271 5.51549 5.56367 5.64841 5.76750 5.92770 5.95293 6.00975 6.09598 6.16700 6.19954 6.33384 6.44608 6.51068 6.52159 6.69766 6.84400 7.18060 7.29707 7.46726 7.56391 7.62784 7.80451 7.85528 8.30514 9.16223 9.76804 10.41439 11.32807 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.017139 B = 0.002301 C = 0.002182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1633.262261 B =12168.244541 C =12829.480043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.110 4.110 3 H 0.072 0.928 4 C 0.158 3.842 5 N -0.605 5.605 6 C -0.225 4.225 7 H 0.076 0.924 8 C -0.010 4.010 9 N -0.922 5.922 10 Si 0.915 3.085 11 H -0.286 1.286 12 H -0.289 1.289 13 H -0.285 1.285 14 C 0.140 3.860 15 C -0.111 4.111 16 H 0.078 0.922 17 C 0.130 3.870 18 N -0.708 5.708 19 C 0.556 3.444 20 O -0.526 6.526 21 C -0.042 4.042 22 C -0.144 4.144 23 C 0.150 3.850 24 N -0.463 5.463 25 C 0.153 3.847 26 C -0.151 4.151 27 C 0.094 3.906 28 N -0.488 5.488 29 C 0.162 3.838 30 C -0.134 4.134 31 H 0.051 0.949 32 H 0.044 0.956 33 H 0.056 0.944 34 H 0.013 0.987 35 H 0.107 0.893 36 H 0.253 0.747 37 H 0.025 0.975 38 H 0.018 0.982 39 H 0.076 0.924 40 H 0.072 0.928 41 H 0.403 0.597 42 H 0.150 0.850 43 H 0.173 0.827 44 H 0.147 0.853 45 H 0.160 0.840 46 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.926 -1.756 21.723 21.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.130 4.130 3 H 0.091 0.909 4 C 0.033 3.967 5 N -0.330 5.330 6 C -0.353 4.353 7 H 0.094 0.906 8 C -0.206 4.206 9 N -0.570 5.570 10 Si 0.745 3.255 11 H -0.212 1.212 12 H -0.215 1.215 13 H -0.211 1.211 14 C 0.014 3.986 15 C -0.130 4.130 16 H 0.096 0.904 17 C 0.007 3.993 18 N -0.358 5.358 19 C 0.342 3.658 20 O -0.404 6.404 21 C -0.056 4.056 22 C -0.165 4.165 23 C -0.023 4.023 24 N -0.172 5.172 25 C 0.027 3.973 26 C -0.171 4.171 27 C -0.051 4.051 28 N -0.196 5.196 29 C -0.010 4.010 30 C -0.139 4.139 31 H 0.070 0.930 32 H 0.064 0.936 33 H 0.075 0.925 34 H 0.031 0.969 35 H 0.125 0.875 36 H 0.064 0.936 37 H 0.042 0.958 38 H 0.036 0.964 39 H 0.094 0.906 40 H 0.091 0.909 41 H 0.239 0.761 42 H 0.167 0.833 43 H 0.190 0.810 44 H 0.165 0.835 45 H 0.177 0.823 46 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -2.712 -0.435 22.599 22.766 hybrid contribution 0.629 -1.460 -1.435 2.142 sum -2.083 -1.895 21.164 21.351 Atomic orbital electron populations 1.21655 0.95421 1.01232 1.00956 1.22603 0.94637 0.99569 0.96232 0.90922 1.21990 0.84024 0.95943 0.94700 1.44525 1.10545 1.79078 0.98886 1.19010 0.91044 1.38069 0.87166 0.90602 1.24785 0.97285 1.01864 0.96637 1.69771 1.22335 1.53612 1.11281 0.86154 0.81205 0.78176 0.79960 1.21221 1.21526 1.21130 1.21403 0.93317 0.97109 0.86794 1.22524 0.98787 0.98172 0.93560 0.90357 1.21615 1.00612 0.93735 0.83294 1.46010 1.68132 1.12656 1.09028 1.18004 0.78023 0.87154 0.82644 1.90615 1.51503 1.14567 1.83684 1.20400 0.97578 0.94026 0.93567 1.22570 0.99373 0.93333 1.01216 1.23159 0.90957 1.01138 0.87068 1.67869 1.13674 1.10506 1.25140 1.18924 0.95684 0.89217 0.93479 1.21713 1.02605 0.95940 0.96851 1.22435 0.94432 0.90488 0.97728 1.67763 1.10987 1.40677 1.00166 1.24491 0.89354 0.91953 0.95153 1.19677 1.03203 0.97047 0.93980 0.93022 0.93645 0.92493 0.96885 0.87535 0.93615 0.95759 0.96401 0.90601 0.90938 0.76147 0.83260 0.81023 0.83523 0.82251 0.78336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.91 9.29 37.16 0.35 -1.57 16 2 C -0.11 -1.88 3.09 -88.47 -0.27 -2.15 16 3 H 0.07 1.27 8.05 -51.93 -0.42 0.85 16 4 C 0.16 3.61 5.35 -2.53 -0.01 3.60 16 5 N -0.60 -14.71 3.40 -169.85 -0.58 -15.29 16 6 C -0.22 -6.07 10.28 -15.06 -0.15 -6.22 16 7 H 0.08 1.98 7.83 -52.48 -0.41 1.57 16 8 C -0.01 -0.28 5.49 -17.43 -0.10 -0.37 16 9 N -0.92 -26.14 10.09 55.49 0.56 -25.58 16 10 Si 0.91 21.60 29.55 -169.99 -5.02 16.58 16 11 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 12 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 13 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 14 C 0.14 2.63 6.77 -2.91 -0.02 2.61 16 15 C -0.11 -1.65 2.43 -88.79 -0.22 -1.87 16 16 H 0.08 1.07 8.01 -51.93 -0.42 0.66 16 17 C 0.13 1.67 5.02 -4.04 -0.02 1.65 16 18 N -0.71 -7.69 5.43 -61.21 -0.33 -8.02 16 19 C 0.56 6.69 7.76 -12.26 -0.10 6.60 16 20 O -0.53 -7.71 13.61 5.34 0.07 -7.63 16 21 C -0.04 -0.45 5.94 -104.37 -0.62 -1.07 16 22 C -0.14 -1.11 9.60 -38.92 -0.37 -1.48 16 23 C 0.15 1.15 11.14 -17.45 -0.19 0.96 16 24 N -0.46 -4.79 10.33 -10.95 -0.11 -4.90 16 25 C 0.15 1.72 6.63 -84.88 -0.56 1.16 16 26 C -0.15 -1.43 10.08 -39.34 -0.40 -1.83 16 27 C 0.09 0.89 11.06 -17.99 -0.20 0.69 16 28 N -0.49 -5.96 10.31 -13.24 -0.14 -6.09 16 29 C 0.16 2.04 10.52 -17.07 -0.18 1.86 16 30 C -0.13 -1.59 5.77 -106.55 -0.61 -2.21 16 31 H 0.05 0.72 8.11 -51.93 -0.42 0.29 16 32 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.01 0.32 8.04 -51.93 -0.42 -0.10 16 35 H 0.11 2.79 5.87 -51.93 -0.30 2.49 16 36 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 37 H 0.02 0.47 7.68 -51.93 -0.40 0.07 16 38 H 0.02 0.33 8.14 -51.92 -0.42 -0.10 16 39 H 0.08 1.09 7.93 -51.93 -0.41 0.68 16 40 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 41 H 0.40 3.46 6.65 -40.82 -0.27 3.19 16 42 H 0.15 0.71 6.56 -52.48 -0.34 0.36 16 43 H 0.17 0.69 8.06 -52.49 -0.42 0.27 16 44 H 0.15 1.05 8.06 -52.49 -0.42 0.63 16 45 H 0.16 1.00 8.06 -52.49 -0.42 0.57 16 46 H 0.20 2.65 5.09 -52.48 -0.27 2.38 16 LS Contribution 375.11 15.07 5.65 5.65 Total: -1.00 -32.68 375.11 -9.76 -42.44 By element: Atomic # 1 Polarization: 8.67 SS G_CDS: -6.18 Total: 2.50 kcal Atomic # 6 Polarization: 4.03 SS G_CDS: -3.68 Total: 0.35 kcal Atomic # 7 Polarization: -59.28 SS G_CDS: -0.60 Total: -59.88 kcal Atomic # 8 Polarization: -7.71 SS G_CDS: 0.07 Total: -7.63 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -32.68 -9.76 -42.44 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001092858276.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.201 kcal (2) G-P(sol) polarization free energy of solvation -32.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.437 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds