Wall clock time and date at job start Sat Apr 11 2020 06:07:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 110.88143 * 2 1 4 4 C 1.54911 * 111.00433 * 236.11915 * 2 1 3 5 5 N 1.47425 * 104.92791 * 204.85944 * 4 2 1 6 6 C 1.36931 * 125.64952 * 204.15485 * 5 4 2 7 7 H 1.08005 * 120.00318 * 180.02562 * 6 5 4 8 8 C 1.38813 * 119.99987 * 0.02632 * 6 5 4 9 9 N 1.31614 * 120.00028 * 359.97438 * 8 6 5 10 10 Si 1.86793 * 119.99920 * 180.02562 * 8 6 5 11 11 H 1.48502 * 109.47509 * 59.99890 * 10 8 6 12 12 H 1.48504 * 109.47135 * 179.97438 * 10 8 6 13 13 H 1.48500 * 109.47281 * 299.99768 * 10 8 6 14 14 C 1.47297 * 108.55693 * 24.15151 * 5 4 2 15 15 C 1.54321 * 107.30797 * 358.92777 * 14 5 4 16 16 H 1.09003 * 110.72104 * 96.17659 * 15 14 5 17 17 C 1.52993 * 110.72152 * 219.45064 * 15 14 5 18 18 N 1.46503 * 109.47331 * 288.52453 * 17 15 14 19 19 C 1.34770 * 120.00355 * 180.02562 * 18 17 15 20 20 O 1.21529 * 119.99713 * 359.97438 * 19 18 17 21 21 C 1.47997 * 120.00412 * 179.97438 * 19 18 17 22 22 C 1.38901 * 121.16918 * 354.22558 * 21 19 18 23 23 C 1.39349 * 119.67386 * 179.97438 * 22 21 19 24 24 N 1.31103 * 121.90183 * 359.97438 * 23 22 21 25 25 C 1.33277 * 121.61706 * 0.02562 * 24 23 22 26 26 C 1.40840 * 121.90694 * 179.97438 * 25 24 23 27 27 C 1.36164 * 118.76967 * 180.02562 * 26 25 24 28 28 N 1.32549 * 121.95631 * 0.02655 * 27 26 25 29 29 C 1.31333 * 122.60320 * 359.97438 * 28 27 26 30 30 C 1.40086 * 119.88012 * 359.73983 * 29 28 27 31 31 H 1.08998 * 109.47093 * 182.42997 * 1 2 3 32 32 H 1.08998 * 109.47350 * 302.42765 * 1 2 3 33 33 H 1.09001 * 109.47427 * 62.43199 * 1 2 3 34 34 H 1.08999 * 110.36501 * 323.74910 * 4 2 1 35 35 H 1.08992 * 110.36545 * 85.96599 * 4 2 1 36 36 H 0.96998 * 120.00285 * 180.02562 * 9 8 6 37 37 H 1.08999 * 109.85708 * 239.49954 * 14 5 4 38 38 H 1.09008 * 109.86925 * 118.36046 * 14 5 4 39 39 H 1.09000 * 109.47169 * 48.51968 * 17 15 14 40 40 H 1.09001 * 109.47504 * 168.52045 * 17 15 14 41 41 H 0.97001 * 119.99549 * 359.97438 * 18 17 15 42 42 H 1.08003 * 120.16066 * 359.95312 * 22 21 19 43 43 H 1.08001 * 119.04506 * 179.97438 * 23 22 21 44 44 H 1.07998 * 120.61608 * 359.97438 * 26 25 24 45 45 H 1.08002 * 119.02408 * 180.02562 * 27 26 25 46 46 H 1.08008 * 120.06196 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9185 1.0184 0.0000 4 6 2.0852 -0.8062 -1.2006 5 7 3.4280 -1.2427 -0.7765 6 6 4.4636 -1.5645 -1.6125 7 1 5.4130 -1.8750 -1.2015 8 6 4.2935 -1.4916 -2.9882 9 7 3.1365 -1.1137 -3.4891 10 14 5.7061 -1.9312 -4.1286 11 1 6.1138 -3.3394 -3.8917 12 1 5.2707 -1.7732 -5.5396 13 1 6.8566 -1.0312 -3.8613 14 6 3.4674 -1.2742 0.6956 15 6 2.0862 -0.8083 1.2020 16 1 1.4468 -1.6636 1.4204 17 6 2.2349 0.0868 2.4338 18 7 2.6469 -0.7258 3.5811 19 6 2.8402 -0.1466 4.7825 20 8 2.6732 1.0500 4.9141 21 6 3.2558 -0.9676 5.9416 22 6 3.3388 -2.3511 5.8499 23 6 3.7341 -3.0936 6.9608 24 7 4.0345 -2.5248 8.1032 25 6 3.9767 -1.2028 8.2620 26 6 4.2976 -0.5854 9.4865 27 6 4.2161 0.7707 9.5779 28 7 3.8444 1.5219 8.5510 29 6 3.5310 1.0155 7.3805 30 6 3.5885 -0.3700 7.1815 31 1 -0.3633 -1.0267 0.0436 32 1 -0.3634 0.5510 0.8674 33 1 -0.3634 0.4756 -0.9110 34 1 1.4519 -1.6699 -1.4030 35 1 2.1541 -0.1718 -2.0842 36 1 3.0174 -1.0631 -4.4504 37 1 4.2426 -0.6000 1.0597 38 1 3.6651 -2.2897 1.0393 39 1 2.9888 0.8498 2.2397 40 1 1.2806 0.5662 2.6521 41 1 2.7797 -1.6809 3.4761 42 1 3.0978 -2.8488 4.9222 43 1 3.7948 -4.1688 6.8782 44 1 4.6018 -1.1767 10.3375 45 1 4.4616 1.2484 10.5148 46 1 3.2330 1.6663 6.5716 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001092858276.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:38 Heat of formation + Delta-G solvation = 37.979936 kcal Electronic energy + Delta-G solvation = -28549.464702 eV Core-core repulsion = 24631.917953 eV Total energy + Delta-G solvation = -3917.546749 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.48803 -40.79467 -39.54087 -39.06301 -36.23661 -34.92326 -34.52061 -32.64347 -32.52807 -31.78857 -30.58249 -27.92550 -27.04820 -26.17210 -25.24849 -24.84391 -23.87093 -22.20482 -21.54931 -20.86214 -19.62751 -19.21077 -18.76787 -18.40957 -17.35995 -17.12149 -16.84288 -16.60249 -16.12850 -15.88959 -15.65342 -15.56043 -15.51838 -15.24050 -14.68417 -14.52617 -14.32694 -14.14958 -13.98742 -13.87956 -13.51510 -13.36097 -13.05364 -13.01210 -12.76449 -12.65916 -12.45045 -11.99942 -11.83424 -11.76582 -11.65343 -11.53700 -11.38187 -11.14459 -10.88232 -10.71918 -10.47359 -10.38576 -10.25149 -9.60508 -8.85690 -7.75716 -5.19597 -1.18319 -0.42728 0.39989 1.46934 1.49295 1.55643 1.63973 1.84172 2.04909 2.50115 2.96241 3.07632 3.27224 3.33338 3.37510 3.45086 3.57489 3.62220 3.65911 3.79816 3.90581 3.99317 4.17424 4.25059 4.32769 4.40101 4.53189 4.54242 4.64040 4.67393 4.76230 4.78830 4.82059 4.85445 4.88370 5.00243 5.12238 5.15943 5.28283 5.31591 5.41191 5.42661 5.52156 5.56610 5.75438 5.87299 6.31942 6.34843 6.61127 6.83556 6.99018 7.13037 7.81193 8.44538 9.25331 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.017139 B = 0.002301 C = 0.002182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1633.262261 B =12168.244541 C =12829.480043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.101 4.101 3 H 0.065 0.935 4 C 0.161 3.839 5 N -0.630 5.630 6 C -0.237 4.237 7 H 0.079 0.921 8 C -0.067 4.067 9 N -0.948 5.948 10 Si 0.976 3.024 11 H -0.277 1.277 12 H -0.295 1.295 13 H -0.280 1.280 14 C 0.135 3.865 15 C -0.089 4.089 16 H 0.102 0.898 17 C 0.142 3.858 18 N -0.697 5.697 19 C 0.558 3.442 20 O -0.558 6.558 21 C -0.064 4.064 22 C -0.120 4.120 23 C 0.155 3.845 24 N -0.478 5.478 25 C 0.133 3.867 26 C -0.145 4.145 27 C 0.084 3.916 28 N -0.509 5.509 29 C 0.140 3.860 30 C -0.149 4.149 31 H 0.057 0.943 32 H 0.074 0.926 33 H 0.050 0.950 34 H -0.009 1.009 35 H 0.066 0.934 36 H 0.246 0.754 37 H 0.020 0.980 38 H 0.034 0.966 39 H 0.058 0.942 40 H 0.084 0.916 41 H 0.416 0.584 42 H 0.185 0.815 43 H 0.215 0.785 44 H 0.171 0.829 45 H 0.191 0.809 46 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.898 -3.828 23.693 24.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.121 4.121 3 H 0.083 0.917 4 C 0.036 3.964 5 N -0.356 5.356 6 C -0.366 4.366 7 H 0.097 0.903 8 C -0.260 4.260 9 N -0.598 5.598 10 Si 0.805 3.195 11 H -0.203 1.203 12 H -0.221 1.221 13 H -0.206 1.206 14 C 0.010 3.990 15 C -0.108 4.108 16 H 0.120 0.880 17 C 0.019 3.981 18 N -0.349 5.349 19 C 0.345 3.655 20 O -0.438 6.438 21 C -0.078 4.078 22 C -0.141 4.141 23 C -0.019 4.019 24 N -0.186 5.186 25 C 0.008 3.992 26 C -0.165 4.165 27 C -0.061 4.061 28 N -0.217 5.217 29 C -0.031 4.031 30 C -0.154 4.154 31 H 0.076 0.924 32 H 0.093 0.907 33 H 0.069 0.931 34 H 0.009 0.991 35 H 0.084 0.916 36 H 0.056 0.944 37 H 0.038 0.962 38 H 0.052 0.948 39 H 0.076 0.924 40 H 0.102 0.898 41 H 0.254 0.746 42 H 0.202 0.798 43 H 0.231 0.769 44 H 0.188 0.812 45 H 0.208 0.792 46 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -2.679 -2.523 24.602 24.876 hybrid contribution 0.659 -0.899 -2.006 2.294 sum -2.019 -3.421 22.597 22.943 Atomic orbital electron populations 1.21607 0.92781 1.02115 1.02050 1.22426 0.96697 0.98387 0.94569 0.91650 1.21757 0.83757 0.94989 0.95939 1.44853 1.10410 1.79072 1.01214 1.19387 0.92005 1.37249 0.87978 0.90274 1.25592 0.99585 1.02648 0.98177 1.70044 1.23987 1.54883 1.10836 0.85180 0.78537 0.78186 0.77604 1.20315 1.22099 1.20596 1.21611 0.95605 0.97909 0.83872 1.22353 0.96515 0.98697 0.93237 0.88022 1.21328 1.00740 0.93014 0.83013 1.45799 1.67836 1.13138 1.08106 1.18213 0.77332 0.86865 0.83089 1.90613 1.52861 1.16122 1.84214 1.20295 0.99668 0.95160 0.92643 1.23001 0.96522 0.91976 1.02581 1.23921 0.88963 1.02975 0.86024 1.67944 1.14333 1.09859 1.26509 1.19201 0.96344 0.89807 0.93894 1.22027 1.01306 0.96077 0.97081 1.22911 0.94210 0.90850 0.98083 1.67708 1.11486 1.41835 1.00700 1.24273 0.91036 0.92551 0.95251 1.19756 1.03865 0.96760 0.94989 0.92388 0.90730 0.93099 0.99063 0.91583 0.94420 0.96198 0.94834 0.92372 0.89818 0.74567 0.79784 0.76880 0.81181 0.79243 0.79924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.38 9.29 71.98 0.67 -2.71 16 2 C -0.10 -3.35 3.09 -9.40 -0.03 -3.38 16 3 H 0.07 2.28 8.05 -2.39 -0.02 2.26 16 4 C 0.16 7.49 5.35 86.86 0.46 7.95 16 5 N -0.63 -30.85 3.40 -691.29 -2.35 -33.21 16 6 C -0.24 -12.93 10.28 84.03 0.86 -12.06 16 7 H 0.08 4.13 7.83 -2.91 -0.02 4.11 16 8 C -0.07 -3.76 5.49 84.86 0.47 -3.29 16 9 N -0.95 -55.55 10.09 21.65 0.22 -55.33 16 10 Si 0.98 44.95 29.55 68.60 2.03 46.97 16 11 H -0.28 -12.25 7.11 99.48 0.71 -11.55 16 12 H -0.29 -13.69 7.11 99.48 0.71 -12.99 16 13 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 14 C 0.13 4.89 6.77 86.68 0.59 5.48 16 15 C -0.09 -2.45 2.43 -9.61 -0.02 -2.47 16 16 H 0.10 2.40 8.01 -2.39 -0.02 2.38 16 17 C 0.14 3.37 5.02 86.38 0.43 3.80 16 18 N -0.70 -13.42 5.43 -465.85 -2.53 -15.94 16 19 C 0.56 12.79 7.76 86.83 0.67 13.47 16 20 O -0.56 -16.53 13.61 -3.81 -0.05 -16.59 16 21 C -0.06 -1.27 5.94 -19.70 -0.12 -1.39 16 22 C -0.12 -1.42 9.60 22.70 0.22 -1.21 16 23 C 0.16 1.78 11.14 85.07 0.95 2.73 16 24 N -0.48 -8.62 10.33 -188.55 -1.95 -10.57 16 25 C 0.13 2.82 6.63 40.45 0.27 3.09 16 26 C -0.14 -2.55 10.08 22.42 0.23 -2.32 16 27 C 0.08 1.54 11.06 84.10 0.93 2.47 16 28 N -0.51 -12.68 10.31 -195.79 -2.02 -14.70 16 29 C 0.14 3.66 10.52 85.22 0.90 4.56 16 30 C -0.15 -3.48 5.77 -21.11 -0.12 -3.60 16 31 H 0.06 1.47 8.11 -2.39 -0.02 1.45 16 32 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 33 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 34 H -0.01 -0.43 8.04 -2.39 -0.02 -0.45 16 35 H 0.07 3.63 5.87 -2.39 -0.01 3.61 16 36 H 0.25 14.10 8.31 -92.71 -0.77 13.33 16 37 H 0.02 0.75 7.68 -2.39 -0.02 0.73 16 38 H 0.03 1.13 8.14 -2.38 -0.02 1.11 16 39 H 0.06 1.62 7.93 -2.39 -0.02 1.60 16 40 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 41 H 0.42 5.58 6.65 -92.71 -0.62 4.97 16 42 H 0.18 0.79 6.56 -2.91 -0.02 0.77 16 43 H 0.21 0.56 8.06 -2.91 -0.02 0.54 16 44 H 0.17 2.04 8.06 -2.91 -0.02 2.02 16 45 H 0.19 2.06 8.06 -2.91 -0.02 2.04 16 46 H 0.18 5.26 5.09 -2.91 -0.01 5.24 16 Total: -1.00 -75.24 375.11 1.10 -74.14 By element: Atomic # 1 Polarization: 13.74 SS G_CDS: 0.40 Total: 14.14 kcal Atomic # 6 Polarization: 3.73 SS G_CDS: 7.35 Total: 11.09 kcal Atomic # 7 Polarization: -121.12 SS G_CDS: -8.63 Total: -129.75 kcal Atomic # 8 Polarization: -16.53 SS G_CDS: -0.05 Total: -16.59 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 2.03 Total: 46.97 kcal Total: -75.24 1.10 -74.14 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001092858276.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.116 kcal (2) G-P(sol) polarization free energy of solvation -75.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.136 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds