Wall clock time and date at job start Sat Apr 11 2020 06:06:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.08995 * 109.47565 * 2 1 4 4 C 1.53001 * 109.47095 * 240.00412 * 2 1 3 5 5 C 1.53000 * 109.47442 * 174.55005 * 4 2 1 6 6 H 1.08998 * 109.47398 * 54.61647 * 5 4 2 7 7 C 1.53000 * 109.46532 * 294.62268 * 5 4 2 8 8 N 1.46894 * 109.47458 * 174.62606 * 5 4 2 9 9 C 1.46904 * 111.00348 * 203.25706 * 8 5 4 10 10 C 1.50697 * 109.47165 * 179.97438 * 9 8 5 11 11 O 1.21285 * 120.00298 * 0.02562 * 10 9 8 12 12 N 1.34773 * 119.99720 * 179.97438 * 10 9 8 13 13 C 1.37096 * 120.00275 * 180.02562 * 12 10 9 14 14 H 1.08003 * 119.99931 * 0.02562 * 13 12 10 15 15 C 1.38947 * 120.00407 * 180.02562 * 13 12 10 16 16 N 1.31415 * 120.00104 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 120.00300 * 180.02562 * 15 13 12 18 18 H 1.48506 * 109.47072 * 59.99631 * 17 15 13 19 19 H 1.48497 * 109.47304 * 179.97438 * 17 15 13 20 20 H 1.48502 * 109.47252 * 299.99840 * 17 15 13 21 21 N 1.46503 * 109.47324 * 120.00342 * 2 1 3 22 22 C 1.34770 * 119.99684 * 273.55635 * 21 2 1 23 23 O 1.21700 * 120.00335 * 0.02562 * 22 21 2 24 24 C 1.46659 * 119.99584 * 179.97438 * 22 21 2 25 25 C 1.37936 * 126.21515 * 180.02562 * 24 22 21 26 26 C 1.39919 * 107.11065 * 179.97438 * 25 24 22 27 27 F 1.35103 * 126.07874 * 179.97438 * 26 25 24 28 28 C 1.35571 * 107.84524 * 359.97438 * 26 25 24 29 29 N 1.35753 * 108.83023 * 359.76191 * 28 26 25 30 30 H 0.97000 * 125.67633 * 180.24769 * 29 28 26 31 31 H 1.08999 * 109.47185 * 299.99432 * 1 2 3 32 32 H 1.09004 * 109.47495 * 59.99574 * 1 2 3 33 33 H 1.09007 * 109.47277 * 179.97438 * 1 2 3 34 34 H 1.09001 * 109.47157 * 54.54471 * 4 2 1 35 35 H 1.09003 * 109.47331 * 294.54555 * 4 2 1 36 36 H 1.08993 * 109.47384 * 60.00436 * 7 5 4 37 37 H 1.09006 * 109.47247 * 180.02562 * 7 5 4 38 38 H 1.09003 * 109.47224 * 299.99679 * 7 5 4 39 39 H 1.00907 * 110.99668 * 327.20997 * 8 5 4 40 40 H 1.09003 * 109.46358 * 299.99882 * 9 8 5 41 41 H 1.08997 * 109.46640 * 59.99700 * 9 8 5 42 42 H 0.97006 * 120.00408 * 0.02562 * 12 10 9 43 43 H 0.96995 * 120.00287 * 179.97438 * 16 15 13 44 44 H 0.96998 * 119.99518 * 93.55875 * 21 2 1 45 45 H 1.08001 * 126.44136 * 359.97438 * 25 24 22 46 46 H 1.07996 * 125.58406 * 180.02562 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 3.5638 -0.6036 -1.3198 6 1 3.9999 -0.9711 -0.3909 7 6 3.9533 0.8622 -1.5211 8 7 4.0650 -1.4026 -2.4459 9 6 5.4719 -1.7735 -2.2433 10 6 5.9497 -2.5909 -3.4158 11 8 5.1930 -2.8396 -4.3303 12 7 7.2184 -3.0447 -3.4484 13 6 7.6533 -3.7879 -4.5152 14 1 6.9794 -4.0094 -5.3297 15 6 8.9610 -4.2562 -4.5487 16 7 9.7812 -3.9864 -3.5580 17 14 9.5539 -5.2682 -6.0026 18 1 9.4274 -4.4680 -7.2472 19 1 10.9762 -5.6428 -5.7979 20 1 8.7294 -6.4979 -6.1189 21 7 2.0183 -0.6907 1.1961 22 6 2.1747 -0.0116 2.3497 23 8 1.9097 1.1752 2.3979 24 6 2.6630 -0.7032 3.5472 25 6 2.8691 -0.1371 4.7881 26 6 3.3357 -1.1518 5.6311 27 9 3.6601 -1.0160 6.9355 28 6 3.4044 -2.2953 4.9061 29 7 2.9925 -2.0362 3.6388 30 1 2.9414 -2.6825 2.9173 31 1 -0.3633 0.5137 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 -0.3634 -1.0277 -0.0005 34 1 1.5990 -0.2668 -2.1366 35 1 1.7585 -1.7732 -1.2019 36 1 3.5815 1.4550 -0.6855 37 1 5.0390 0.9460 -1.5718 38 1 3.5172 1.2298 -2.4500 39 1 3.4927 -2.2208 -2.5918 40 1 6.0770 -0.8708 -2.1585 41 1 5.5649 -2.3605 -1.3296 42 1 7.8238 -2.8455 -2.7171 43 1 10.6940 -4.3136 -3.5812 44 1 2.2291 -1.6367 1.1577 45 1 2.7018 0.8951 5.0582 46 1 3.7293 -3.2561 5.2773 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001135023821.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:29 Heat of formation + Delta-G solvation = -79.374255 kcal Electronic energy + Delta-G solvation = -28840.463736 eV Core-core repulsion = 24487.058902 eV Total energy + Delta-G solvation = -4353.404833 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.170 amu Computer time = 1.69 seconds Orbital eigenvalues (eV) -48.85121 -41.75052 -39.82351 -38.48771 -37.41716 -35.34901 -33.93732 -32.35977 -31.31061 -31.21908 -30.39584 -29.28416 -27.17467 -26.30514 -24.30549 -23.77167 -21.84746 -21.09402 -20.76911 -20.32347 -19.60401 -19.20070 -17.92961 -16.78263 -16.45231 -16.39538 -16.11908 -15.83917 -15.51371 -15.26028 -15.08886 -14.97023 -14.52122 -14.33883 -14.13001 -13.96706 -13.82687 -13.73859 -13.62790 -13.20944 -12.80017 -12.55736 -12.37324 -12.17921 -12.09467 -11.95513 -11.74626 -11.55710 -11.27487 -11.06039 -10.95993 -10.77116 -10.49033 -10.47749 -10.25310 -9.56364 -9.54340 -9.36881 -8.73934 -8.50345 -8.13367 -8.00633 -6.45819 -3.86972 0.88484 1.99727 2.42456 2.63661 2.92156 3.16654 3.22847 3.26952 3.85156 3.94141 4.05949 4.19687 4.43510 4.50263 4.59215 4.66199 4.79207 4.84360 5.02245 5.07660 5.11833 5.19676 5.21431 5.29240 5.37186 5.51066 5.56045 5.63608 5.69389 5.75707 5.79926 5.89920 5.93583 5.96828 6.03169 6.11434 6.21433 6.35345 6.38127 6.68467 7.03698 7.18107 7.50884 7.60634 7.73857 8.01623 8.56563 9.13418 9.49551 10.00845 10.71795 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.011275 B = 0.002212 C = 0.001924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2482.721749 B =12656.445246 C =14550.017747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.142 3.858 3 H 0.100 0.900 4 C -0.129 4.129 5 C 0.084 3.916 6 H 0.038 0.962 7 C -0.144 4.144 8 N -0.664 5.664 9 C 0.052 3.948 10 C 0.440 3.560 11 O -0.583 6.583 12 N -0.563 5.563 13 C -0.301 4.301 14 H 0.102 0.898 15 C 0.023 3.977 16 N -0.902 5.902 17 Si 0.931 3.069 18 H -0.273 1.273 19 H -0.284 1.284 20 H -0.274 1.274 21 N -0.722 5.722 22 C 0.591 3.409 23 O -0.521 6.521 24 C -0.028 4.028 25 C -0.129 4.129 26 C 0.002 3.998 27 F -0.126 7.126 28 C 0.004 3.996 29 N -0.527 5.527 30 H 0.426 0.574 31 H 0.061 0.939 32 H 0.070 0.930 33 H 0.057 0.943 34 H 0.093 0.907 35 H 0.068 0.932 36 H 0.055 0.945 37 H 0.055 0.945 38 H 0.064 0.936 39 H 0.348 0.652 40 H 0.085 0.915 41 H 0.040 0.960 42 H 0.392 0.608 43 H 0.272 0.728 44 H 0.393 0.607 45 H 0.160 0.840 46 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.439 4.502 16.795 23.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.038 3.962 3 H 0.118 0.882 4 C -0.167 4.167 5 C -0.026 4.026 6 H 0.056 0.944 7 C -0.202 4.202 8 N -0.297 5.297 9 C -0.081 4.081 10 C 0.225 3.775 11 O -0.468 6.468 12 N -0.200 5.200 13 C -0.430 4.430 14 H 0.120 0.880 15 C -0.179 4.179 16 N -0.543 5.543 17 Si 0.758 3.242 18 H -0.198 1.198 19 H -0.209 1.209 20 H -0.199 1.199 21 N -0.374 5.374 22 C 0.378 3.622 23 O -0.397 6.397 24 C -0.142 4.142 25 C -0.156 4.156 26 C -0.023 4.023 27 F -0.105 7.105 28 C -0.133 4.133 29 N -0.124 5.124 30 H 0.265 0.735 31 H 0.080 0.920 32 H 0.089 0.911 33 H 0.076 0.924 34 H 0.112 0.888 35 H 0.087 0.913 36 H 0.074 0.926 37 H 0.074 0.926 38 H 0.083 0.917 39 H 0.168 0.832 40 H 0.104 0.896 41 H 0.058 0.942 42 H 0.225 0.775 43 H 0.082 0.918 44 H 0.227 0.773 45 H 0.178 0.822 46 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -15.800 5.622 15.704 22.975 hybrid contribution 1.004 -1.958 0.445 2.244 sum -14.796 3.665 16.149 22.207 Atomic orbital electron populations 1.22179 0.94812 1.02280 1.02896 1.21135 0.94107 0.98145 0.82816 0.88218 1.22097 0.95797 1.01118 0.97722 1.21510 0.93413 0.95471 0.92195 0.94403 1.21868 1.01846 0.94722 1.01715 1.60108 1.02303 1.26561 1.40709 1.21704 0.90563 0.99338 0.96461 1.19802 0.83548 0.85142 0.88985 1.90519 1.55210 1.61954 1.39092 1.41867 1.09851 1.46941 1.21318 1.19652 0.96027 1.27624 0.99714 0.87970 1.25267 0.95824 0.98334 0.98480 1.69601 1.06822 1.46197 1.31693 0.85915 0.77452 0.79882 0.80958 1.19838 1.20950 1.19914 1.46006 1.67956 1.12991 1.10412 1.16900 0.77498 0.86345 0.81454 1.90873 1.50581 1.14191 1.84030 1.20319 1.13494 0.83850 0.96586 1.21338 1.03430 1.00238 0.90570 1.16485 1.10962 0.94635 0.80233 1.91467 1.91381 1.96234 1.31426 1.21824 1.06787 1.00184 0.84468 1.41735 1.50564 1.09093 1.11007 0.73526 0.91988 0.91097 0.92440 0.88830 0.91318 0.92626 0.92622 0.91707 0.83239 0.89646 0.94222 0.77489 0.91777 0.77299 0.82202 0.79866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.18 9.50 37.15 0.35 -0.82 16 2 C 0.14 1.13 2.47 -67.93 -0.17 0.96 16 3 H 0.10 0.97 5.73 -51.93 -0.30 0.67 16 4 C -0.13 -1.07 4.28 -26.73 -0.11 -1.18 16 5 C 0.08 0.92 2.63 -67.72 -0.18 0.74 16 6 H 0.04 0.40 7.31 -51.93 -0.38 0.02 16 7 C -0.14 -1.64 9.16 37.16 0.34 -1.30 16 8 N -0.66 -9.85 5.93 -108.00 -0.64 -10.49 16 9 C 0.05 0.88 5.97 -4.98 -0.03 0.85 16 10 C 0.44 10.13 7.82 -10.99 -0.09 10.04 16 11 O -0.58 -15.51 15.78 5.55 0.09 -15.42 16 12 N -0.56 -14.04 5.29 -10.97 -0.06 -14.10 16 13 C -0.30 -8.28 9.68 -14.93 -0.14 -8.42 16 14 H 0.10 2.95 7.16 -52.48 -0.38 2.57 16 15 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 16 N -0.90 -24.26 13.05 55.50 0.72 -23.54 16 17 Si 0.93 20.79 29.55 -169.99 -5.02 15.77 16 18 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 19 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 20 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 21 N -0.72 -5.29 4.44 -55.12 -0.25 -5.54 16 22 C 0.59 5.83 7.77 -12.86 -0.10 5.73 16 23 O -0.52 -6.97 16.52 5.19 0.09 -6.88 16 24 C -0.03 -0.25 7.05 -81.98 -0.58 -0.83 16 25 C -0.13 -1.24 10.66 -39.06 -0.42 -1.66 16 26 C 0.00 0.02 7.98 -39.91 -0.32 -0.30 16 27 F -0.13 -1.29 17.32 2.25 0.04 -1.25 16 28 C 0.00 0.03 11.90 -16.77 -0.20 -0.17 16 29 N -0.53 -2.99 6.00 -9.31 -0.06 -3.04 16 30 H 0.43 1.12 8.19 -40.82 -0.33 0.79 16 31 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 32 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 34 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 35 H 0.07 0.50 8.02 -51.93 -0.42 0.09 16 36 H 0.05 0.58 6.47 -51.93 -0.34 0.24 16 37 H 0.05 0.69 7.34 -51.93 -0.38 0.31 16 38 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.35 5.20 8.00 -39.29 -0.31 4.89 16 40 H 0.09 1.39 7.32 -51.93 -0.38 1.01 16 41 H 0.04 0.60 8.06 -51.93 -0.42 0.18 16 42 H 0.39 9.35 7.90 -40.82 -0.32 9.03 16 43 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 44 H 0.39 1.95 7.74 -40.82 -0.32 1.63 16 45 H 0.16 1.51 8.06 -52.49 -0.42 1.09 16 46 H 0.18 0.59 8.06 -52.49 -0.42 0.17 16 LS Contribution 391.95 15.07 5.91 5.91 Total: -1.00 -34.18 391.95 -7.28 -41.46 By element: Atomic # 1 Polarization: 19.35 SS G_CDS: -6.37 Total: 12.98 kcal Atomic # 6 Polarization: 5.88 SS G_CDS: -1.74 Total: 4.14 kcal Atomic # 7 Polarization: -56.43 SS G_CDS: -0.27 Total: -56.71 kcal Atomic # 8 Polarization: -22.47 SS G_CDS: 0.17 Total: -22.30 kcal Atomic # 9 Polarization: -1.29 SS G_CDS: 0.04 Total: -1.25 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -34.18 -7.28 -41.46 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135023821.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.916 kcal (2) G-P(sol) polarization free energy of solvation -34.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.69 seconds