Wall clock time and date at job start Sat Apr 11 2020 06:06:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46505 * 109.47169 * 2 1 4 4 C 1.37840 * 119.99777 * 179.72575 * 3 2 1 5 5 N 1.30231 * 124.75015 * 0.29827 * 4 3 2 6 6 C 1.30871 * 117.26461 * 180.02562 * 5 4 3 7 7 C 1.36707 * 114.03344 * 359.97438 * 6 5 4 8 8 C 1.46219 * 126.11564 * 180.02562 * 7 6 5 9 9 O 1.21757 * 120.00052 * 352.29101 * 8 7 6 10 10 N 1.34776 * 120.00349 * 172.28515 * 8 7 6 11 11 C 1.46500 * 119.99853 * 2.03901 * 10 8 7 12 12 C 1.50701 * 109.47504 * 82.27540 * 11 10 8 13 13 H 1.08000 * 119.99820 * 359.97438 * 12 11 10 14 14 C 1.37874 * 119.99808 * 179.97438 * 12 11 10 15 15 N 1.31515 * 120.00374 * 0.02562 * 14 12 11 16 16 Si 1.86799 * 119.99528 * 179.97438 * 14 12 11 17 17 H 1.48494 * 109.47514 * 0.02562 * 16 14 12 18 18 H 1.48503 * 109.47062 * 120.00024 * 16 14 12 19 19 H 1.48500 * 109.47338 * 240.00044 * 16 14 12 20 20 C 1.46500 * 120.00083 * 182.02997 * 10 8 7 21 21 C 1.53004 * 109.46688 * 90.00476 * 20 10 8 22 22 C 1.53007 * 109.46984 * 179.97438 * 21 20 10 23 23 N 1.46891 * 109.47202 * 179.97438 * 22 21 20 24 24 C 1.46899 * 111.00219 * 170.00052 * 23 22 21 25 25 C 1.46900 * 111.00087 * 293.95483 * 23 22 21 26 26 S 1.70915 * 124.74730 * 179.97438 * 4 3 2 27 27 H 1.08997 * 109.47260 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.46840 * 300.00641 * 1 2 3 29 29 H 1.09002 * 109.46896 * 60.00269 * 1 2 3 30 30 H 1.09002 * 109.47245 * 239.99950 * 2 1 3 31 31 H 1.08994 * 109.47147 * 119.99932 * 2 1 3 32 32 H 0.96994 * 120.00077 * 359.97438 * 3 2 1 33 33 H 1.08005 * 122.98576 * 179.97438 * 6 5 4 34 34 H 1.09000 * 109.46937 * 202.28027 * 11 10 8 35 35 H 1.09001 * 109.46869 * 322.27089 * 11 10 8 36 36 H 0.97001 * 120.00028 * 179.97438 * 15 14 12 37 37 H 1.09002 * 109.47282 * 210.00082 * 20 10 8 38 38 H 1.09000 * 109.47506 * 330.00706 * 20 10 8 39 39 H 1.08996 * 109.47075 * 299.99392 * 21 20 10 40 40 H 1.08997 * 109.47044 * 60.00418 * 21 20 10 41 41 H 1.09005 * 109.47043 * 300.00258 * 22 21 20 42 42 H 1.09004 * 109.47028 * 59.99777 * 22 21 20 43 43 H 1.08997 * 109.47207 * 59.99888 * 24 23 22 44 44 H 1.09004 * 109.47276 * 179.97438 * 24 23 22 45 45 H 1.08997 * 109.47092 * 300.00384 * 24 23 22 46 46 H 1.09004 * 109.47045 * 60.00073 * 25 23 22 47 47 H 1.09009 * 109.47170 * 179.97438 * 25 23 22 48 48 H 1.08995 * 109.47360 * 299.99765 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 3.3736 1.6331 0.0057 5 7 4.2989 0.7167 0.0058 6 6 5.5434 1.1213 0.0122 7 6 5.6868 2.4808 0.0174 8 6 6.9519 3.2140 0.0244 9 8 8.0021 2.6147 0.1676 10 7 6.9556 4.5532 -0.1276 11 6 5.6897 5.2794 -0.2551 12 6 5.1099 5.5228 1.1144 13 1 5.6320 5.1714 1.9921 14 6 3.9130 6.1942 1.2469 15 7 3.2770 6.6218 0.1781 16 14 3.1941 6.4954 2.9445 17 1 4.0962 5.9188 3.9735 18 1 3.0554 7.9564 3.1713 19 1 1.8595 5.8509 3.0384 20 6 8.2256 5.2826 -0.1651 21 6 8.7187 5.3738 -1.6106 22 6 10.0447 6.1362 -1.6500 23 7 10.5185 6.2233 -3.0377 24 6 11.6572 7.1447 -3.1484 25 6 10.8636 4.8946 -3.5605 26 16 4.0748 3.1918 0.0058 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 1.3881 2.1185 -0.0004 33 1 6.3828 0.4416 0.0132 34 1 5.8669 6.2344 -0.7497 35 1 4.9899 4.6886 -0.8462 36 1 2.4348 7.0938 0.2714 37 1 8.0797 6.2868 0.2330 38 1 8.9650 4.7562 0.4384 39 1 8.8646 4.3697 -2.0088 40 1 7.9793 5.9003 -2.2142 41 1 9.8984 7.1404 -1.2519 42 1 10.7843 5.6102 -1.0462 43 1 12.4749 6.7887 -2.5216 44 1 11.9884 7.1900 -4.1859 45 1 11.3537 8.1386 -2.8197 46 1 9.9831 4.2527 -3.5314 47 1 11.2110 4.9880 -4.5895 48 1 11.6525 4.4571 -2.9487 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000129722692.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:45 Heat of formation + Delta-G solvation = 15.211609 kcal Electronic energy + Delta-G solvation = -27794.887531 eV Core-core repulsion = 24011.797424 eV Total energy + Delta-G solvation = -3783.090106 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.167 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.28710 -38.59085 -37.52561 -35.86500 -35.14801 -33.16143 -31.71397 -30.81262 -28.49535 -27.63920 -27.55528 -25.86644 -24.22029 -23.22638 -23.10551 -22.28784 -20.70950 -19.88181 -18.68972 -17.57940 -16.75615 -16.36726 -16.01022 -15.43276 -15.34718 -15.11804 -14.88226 -14.65951 -14.51005 -14.35618 -14.13726 -13.75562 -13.43571 -13.34943 -12.74096 -12.45806 -12.40469 -12.27620 -12.16121 -11.90357 -11.80001 -11.76091 -11.61193 -11.49812 -11.33720 -11.27993 -11.02075 -10.89593 -10.34773 -10.25777 -10.15591 -9.90021 -9.68331 -9.22013 -8.91460 -8.47892 -8.34171 -8.21117 -7.85364 -6.98126 -6.36723 -4.39411 1.39857 2.11996 2.70569 3.11704 3.21333 3.26870 3.39593 3.67038 3.82880 4.05783 4.18235 4.23225 4.96782 5.02070 5.08110 5.11477 5.15280 5.18309 5.28424 5.38379 5.42077 5.51457 5.62726 5.65377 5.70044 5.78987 5.80379 5.83113 5.95757 5.96455 6.00582 6.03069 6.16245 6.20837 6.48207 6.51700 6.63935 6.66438 6.92968 7.04324 7.07487 7.38495 7.43233 7.53371 7.59929 7.78077 8.23167 8.61614 8.66170 9.01496 9.21624 10.67011 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.010555 B = 0.003651 C = 0.002941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2652.143192 B = 7667.238149 C = 9517.290078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.130 3.870 3 N -0.696 5.696 4 C 0.212 3.788 5 N -0.573 5.573 6 C 0.145 3.855 7 C -0.358 4.358 8 C 0.603 3.397 9 O -0.572 6.572 10 N -0.598 5.598 11 C 0.231 3.769 12 C -0.532 4.532 13 H 0.069 0.931 14 C 0.075 3.925 15 N -0.878 5.878 16 Si 0.890 3.110 17 H -0.269 1.269 18 H -0.280 1.280 19 H -0.279 1.279 20 C 0.126 3.874 21 C -0.130 4.130 22 C 0.059 3.941 23 N -0.548 5.548 24 C 0.025 3.975 25 C 0.022 3.978 26 S 0.326 5.674 27 H 0.070 0.930 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.061 0.939 31 H 0.060 0.940 32 H 0.410 0.590 33 H 0.169 0.831 34 H 0.053 0.947 35 H 0.042 0.958 36 H 0.269 0.731 37 H 0.078 0.922 38 H 0.073 0.927 39 H 0.064 0.936 40 H 0.072 0.928 41 H 0.075 0.925 42 H 0.034 0.966 43 H 0.022 0.978 44 H 0.065 0.935 45 H 0.067 0.933 46 H 0.073 0.927 47 H 0.063 0.937 48 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.866 -3.256 -4.214 5.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.003 3.997 3 N -0.337 5.337 4 C -0.151 4.151 5 N -0.298 5.298 6 C -0.017 4.017 7 C -0.486 4.486 8 C 0.392 3.608 9 O -0.455 6.455 10 N -0.327 5.327 11 C 0.108 3.892 12 C -0.574 4.574 13 H 0.087 0.913 14 C -0.130 4.130 15 N -0.515 5.515 16 Si 0.717 3.283 17 H -0.193 1.193 18 H -0.205 1.205 19 H -0.205 1.205 20 C 0.002 3.998 21 C -0.169 4.169 22 C -0.069 4.069 23 N -0.272 5.272 24 C -0.123 4.123 25 C -0.126 4.126 26 S 0.587 5.413 27 H 0.089 0.911 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.247 0.753 33 H 0.186 0.814 34 H 0.070 0.930 35 H 0.058 0.942 36 H 0.079 0.921 37 H 0.096 0.904 38 H 0.092 0.908 39 H 0.083 0.917 40 H 0.091 0.909 41 H 0.094 0.906 42 H 0.052 0.948 43 H 0.041 0.959 44 H 0.084 0.916 45 H 0.086 0.914 46 H 0.092 0.908 47 H 0.082 0.918 48 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 1.091 -3.018 -4.526 5.548 hybrid contribution 0.573 -0.396 1.434 1.594 sum 1.664 -3.414 -3.092 4.897 Atomic orbital electron populations 1.22013 0.95090 1.02770 1.02449 1.21199 0.93265 0.83322 1.01875 1.43734 1.01114 1.07836 1.80971 1.25816 0.89863 1.01532 0.97911 1.66166 0.99539 1.36727 1.27346 1.21668 0.92755 0.91830 0.95490 1.25418 0.97868 0.97676 1.27591 1.16693 0.86716 0.81643 0.75700 1.90703 1.32523 1.68786 1.53468 1.47934 1.08245 1.05892 1.70668 1.19614 0.79210 0.92648 0.97720 1.21582 1.06281 1.36862 0.92724 0.91304 1.24889 0.96439 0.94499 0.97198 1.69926 1.16408 1.36813 1.28308 0.86531 0.79305 0.78325 0.84176 1.19319 1.20550 1.20474 1.21194 0.85905 0.97028 0.95658 1.21971 0.96238 1.00634 0.98071 1.22078 0.96349 1.00703 0.87793 1.61966 1.33940 1.10319 1.20949 1.22366 0.91723 0.96940 1.01293 1.22431 1.00527 0.90265 0.99413 1.86859 0.94703 0.94573 1.65209 0.91068 0.92095 0.92074 0.92117 0.92151 0.75308 0.81358 0.92951 0.94195 0.92147 0.90401 0.90843 0.91740 0.90886 0.90626 0.94773 0.95909 0.91640 0.91372 0.90811 0.91781 0.95743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.51 10.03 37.16 0.37 -1.14 16 2 C 0.13 1.64 6.64 -4.04 -0.03 1.61 16 3 N -0.70 -10.57 5.68 -62.40 -0.35 -10.92 16 4 C 0.21 3.97 8.05 -87.98 -0.71 3.26 16 5 N -0.57 -11.34 10.06 -14.77 -0.15 -11.49 16 6 C 0.15 2.93 11.15 -18.51 -0.21 2.73 16 7 C -0.36 -7.69 6.25 -36.93 -0.23 -7.92 16 8 C 0.60 13.48 7.55 -13.06 -0.10 13.38 16 9 O -0.57 -13.52 16.44 5.14 0.08 -13.44 16 10 N -0.60 -12.60 2.48 -176.76 -0.44 -13.04 16 11 C 0.23 5.19 4.75 -5.19 -0.02 5.17 16 12 C -0.53 -12.76 7.00 -34.44 -0.24 -13.00 16 13 H 0.07 1.75 7.81 -52.49 -0.41 1.34 16 14 C 0.08 1.80 5.06 -17.82 -0.09 1.71 16 15 N -0.88 -21.45 13.29 55.43 0.74 -20.71 16 16 Si 0.89 19.14 29.54 -169.99 -5.02 14.12 16 17 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 18 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 19 H -0.28 -5.91 7.11 56.52 0.40 -5.50 16 20 C 0.13 2.26 5.39 -4.04 -0.02 2.24 16 21 C -0.13 -2.07 5.46 -26.73 -0.15 -2.21 16 22 C 0.06 0.79 4.96 -3.83 -0.02 0.78 16 23 N -0.55 -7.06 5.02 -251.26 -1.26 -8.32 16 24 C 0.03 0.26 9.57 60.06 0.57 0.83 16 25 C 0.02 0.26 9.32 60.06 0.56 0.82 16 26 S 0.33 6.66 16.14 -107.50 -1.74 4.92 16 27 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.41 5.52 8.59 -40.82 -0.35 5.17 16 33 H 0.17 3.14 8.06 -52.48 -0.42 2.71 16 34 H 0.05 1.22 8.01 -51.93 -0.42 0.80 16 35 H 0.04 0.95 4.49 -22.64 -0.10 0.84 16 36 H 0.27 6.26 8.31 -40.82 -0.34 5.92 16 37 H 0.08 1.33 8.07 -51.93 -0.42 0.91 16 38 H 0.07 1.34 7.39 -51.93 -0.38 0.96 16 39 H 0.06 1.10 6.55 -51.93 -0.34 0.76 16 40 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 41 H 0.08 0.95 8.06 -51.93 -0.42 0.54 16 42 H 0.03 0.46 8.12 -51.93 -0.42 0.03 16 43 H 0.02 0.22 8.14 -51.93 -0.42 -0.20 16 44 H 0.06 0.60 8.12 -51.93 -0.42 0.18 16 45 H 0.07 0.66 8.12 -51.93 -0.42 0.24 16 46 H 0.07 0.96 6.47 -51.93 -0.34 0.62 16 47 H 0.06 0.66 8.12 -51.92 -0.42 0.24 16 48 H 0.02 0.28 8.14 -51.93 -0.42 -0.14 16 LS Contribution 400.60 15.07 6.04 6.04 Total: -1.00 -28.16 400.60 -10.21 -38.37 By element: Atomic # 1 Polarization: 14.02 SS G_CDS: -7.80 Total: 6.22 kcal Atomic # 6 Polarization: 8.56 SS G_CDS: -0.31 Total: 8.26 kcal Atomic # 7 Polarization: -63.03 SS G_CDS: -1.47 Total: -64.49 kcal Atomic # 8 Polarization: -13.52 SS G_CDS: 0.08 Total: -13.44 kcal Atomic # 14 Polarization: 19.14 SS G_CDS: -5.02 Total: 14.12 kcal Atomic # 16 Polarization: 6.66 SS G_CDS: -1.74 Total: 4.92 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -28.16 -10.21 -38.37 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000129722692.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.586 kcal (2) G-P(sol) polarization free energy of solvation -28.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.374 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds