Wall clock time and date at job start Sat Apr 11 2020 06:06:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46505 * 109.47169 * 2 1 4 4 C 1.37840 * 119.99777 * 179.72575 * 3 2 1 5 5 N 1.30231 * 124.75015 * 0.29827 * 4 3 2 6 6 C 1.30871 * 117.26461 * 180.02562 * 5 4 3 7 7 C 1.36707 * 114.03344 * 359.97438 * 6 5 4 8 8 C 1.46219 * 126.11564 * 180.02562 * 7 6 5 9 9 O 1.21757 * 120.00052 * 352.29101 * 8 7 6 10 10 N 1.34776 * 120.00349 * 172.28515 * 8 7 6 11 11 C 1.46500 * 119.99853 * 2.03901 * 10 8 7 12 12 C 1.50701 * 109.47504 * 82.27540 * 11 10 8 13 13 H 1.08000 * 119.99820 * 359.97438 * 12 11 10 14 14 C 1.37874 * 119.99808 * 179.97438 * 12 11 10 15 15 N 1.31515 * 120.00374 * 0.02562 * 14 12 11 16 16 Si 1.86799 * 119.99528 * 179.97438 * 14 12 11 17 17 H 1.48494 * 109.47514 * 0.02562 * 16 14 12 18 18 H 1.48503 * 109.47062 * 120.00024 * 16 14 12 19 19 H 1.48500 * 109.47338 * 240.00044 * 16 14 12 20 20 C 1.46500 * 120.00083 * 182.02997 * 10 8 7 21 21 C 1.53004 * 109.46688 * 90.00476 * 20 10 8 22 22 C 1.53007 * 109.46984 * 179.97438 * 21 20 10 23 23 N 1.46891 * 109.47202 * 179.97438 * 22 21 20 24 24 C 1.46899 * 111.00219 * 170.00052 * 23 22 21 25 25 C 1.46900 * 111.00087 * 293.95483 * 23 22 21 26 26 S 1.70915 * 124.74730 * 179.97438 * 4 3 2 27 27 H 1.08997 * 109.47260 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.46840 * 300.00641 * 1 2 3 29 29 H 1.09002 * 109.46896 * 60.00269 * 1 2 3 30 30 H 1.09002 * 109.47245 * 239.99950 * 2 1 3 31 31 H 1.08994 * 109.47147 * 119.99932 * 2 1 3 32 32 H 0.96994 * 120.00077 * 359.97438 * 3 2 1 33 33 H 1.08005 * 122.98576 * 179.97438 * 6 5 4 34 34 H 1.09000 * 109.46937 * 202.28027 * 11 10 8 35 35 H 1.09001 * 109.46869 * 322.27089 * 11 10 8 36 36 H 0.97001 * 120.00028 * 179.97438 * 15 14 12 37 37 H 1.09002 * 109.47282 * 210.00082 * 20 10 8 38 38 H 1.09000 * 109.47506 * 330.00706 * 20 10 8 39 39 H 1.08996 * 109.47075 * 299.99392 * 21 20 10 40 40 H 1.08997 * 109.47044 * 60.00418 * 21 20 10 41 41 H 1.09005 * 109.47043 * 300.00258 * 22 21 20 42 42 H 1.09004 * 109.47028 * 59.99777 * 22 21 20 43 43 H 1.08997 * 109.47207 * 59.99888 * 24 23 22 44 44 H 1.09004 * 109.47276 * 179.97438 * 24 23 22 45 45 H 1.08997 * 109.47092 * 300.00384 * 24 23 22 46 46 H 1.09004 * 109.47045 * 60.00073 * 25 23 22 47 47 H 1.09009 * 109.47170 * 179.97438 * 25 23 22 48 48 H 1.08995 * 109.47360 * 299.99765 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 3.3736 1.6331 0.0057 5 7 4.2989 0.7167 0.0058 6 6 5.5434 1.1213 0.0122 7 6 5.6868 2.4808 0.0174 8 6 6.9519 3.2140 0.0244 9 8 8.0021 2.6147 0.1676 10 7 6.9556 4.5532 -0.1276 11 6 5.6897 5.2794 -0.2551 12 6 5.1099 5.5228 1.1144 13 1 5.6320 5.1714 1.9921 14 6 3.9130 6.1942 1.2469 15 7 3.2770 6.6218 0.1781 16 14 3.1941 6.4954 2.9445 17 1 4.0962 5.9188 3.9735 18 1 3.0554 7.9564 3.1713 19 1 1.8595 5.8509 3.0384 20 6 8.2256 5.2826 -0.1651 21 6 8.7187 5.3738 -1.6106 22 6 10.0447 6.1362 -1.6500 23 7 10.5185 6.2233 -3.0377 24 6 11.6572 7.1447 -3.1484 25 6 10.8636 4.8946 -3.5605 26 16 4.0748 3.1918 0.0058 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 1.3881 2.1185 -0.0004 33 1 6.3828 0.4416 0.0132 34 1 5.8669 6.2344 -0.7497 35 1 4.9899 4.6886 -0.8462 36 1 2.4348 7.0938 0.2714 37 1 8.0797 6.2868 0.2330 38 1 8.9650 4.7562 0.4384 39 1 8.8646 4.3697 -2.0088 40 1 7.9793 5.9003 -2.2142 41 1 9.8984 7.1404 -1.2519 42 1 10.7843 5.6102 -1.0462 43 1 12.4749 6.7887 -2.5216 44 1 11.9884 7.1900 -4.1859 45 1 11.3537 8.1386 -2.8197 46 1 9.9831 4.2527 -3.5314 47 1 11.2110 4.9880 -4.5895 48 1 11.6525 4.4571 -2.9487 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000129722692.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:44 Heat of formation + Delta-G solvation = -2.136346 kcal Electronic energy + Delta-G solvation = -27795.639794 eV Core-core repulsion = 24011.797424 eV Total energy + Delta-G solvation = -3783.842370 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.167 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.93092 -40.13923 -38.61107 -37.14924 -36.83507 -34.85877 -33.18675 -31.95372 -29.92882 -29.35032 -28.48645 -27.21124 -25.64017 -24.95692 -24.31162 -23.52227 -21.85839 -21.39452 -20.18494 -19.21193 -18.57362 -17.92469 -17.56912 -16.56903 -16.54664 -16.42514 -16.30407 -16.12311 -15.88222 -15.70832 -15.44572 -15.05825 -14.84220 -14.75241 -14.42986 -14.17891 -13.64836 -13.40773 -13.26288 -13.14610 -12.94560 -12.88898 -12.71836 -12.68231 -12.60005 -12.54342 -12.42933 -12.36114 -12.02076 -11.87360 -11.71443 -11.52099 -11.05261 -10.96682 -10.69388 -10.07989 -9.86540 -9.55524 -9.31518 -8.48958 -8.19391 -6.28071 -0.19692 0.55968 1.10734 1.40707 1.46726 1.54873 1.76891 2.23476 2.38111 2.42414 2.50332 3.05954 3.10793 3.74632 3.85630 4.05552 4.14159 4.15221 4.23658 4.25180 4.42394 4.45066 4.51280 4.54764 4.62320 4.63205 4.67807 4.74621 4.80120 4.81288 4.90105 4.99964 5.02418 5.07183 5.10376 5.14959 5.16797 5.24967 5.29016 5.65077 5.81414 5.94820 6.00165 6.05359 6.12800 6.23896 6.48817 6.76295 7.12117 7.26906 7.37749 8.83680 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.010555 B = 0.003651 C = 0.002941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2652.143192 B = 7667.238149 C = 9517.290078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.125 3.875 3 N -0.683 5.683 4 C 0.226 3.774 5 N -0.582 5.582 6 C 0.156 3.844 7 C -0.385 4.385 8 C 0.597 3.403 9 O -0.593 6.593 10 N -0.599 5.599 11 C 0.242 3.758 12 C -0.539 4.539 13 H 0.050 0.950 14 C 0.052 3.948 15 N -0.896 5.896 16 Si 0.934 3.066 17 H -0.279 1.279 18 H -0.276 1.276 19 H -0.270 1.270 20 C 0.124 3.876 21 C -0.115 4.115 22 C 0.066 3.934 23 N -0.564 5.564 24 C 0.025 3.975 25 C 0.023 3.977 26 S 0.298 5.702 27 H 0.091 0.909 28 H 0.065 0.935 29 H 0.068 0.932 30 H 0.057 0.943 31 H 0.054 0.946 32 H 0.420 0.580 33 H 0.181 0.819 34 H 0.041 0.959 35 H 0.038 0.962 36 H 0.273 0.727 37 H 0.085 0.915 38 H 0.069 0.931 39 H 0.049 0.951 40 H 0.062 0.938 41 H 0.086 0.914 42 H 0.036 0.964 43 H 0.028 0.972 44 H 0.078 0.922 45 H 0.074 0.926 46 H 0.056 0.944 47 H 0.081 0.919 48 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.916 -3.486 -4.305 5.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.000 4.000 3 N -0.322 5.322 4 C -0.138 4.138 5 N -0.308 5.308 6 C -0.008 4.008 7 C -0.513 4.513 8 C 0.387 3.613 9 O -0.478 6.478 10 N -0.328 5.328 11 C 0.119 3.881 12 C -0.581 4.581 13 H 0.068 0.932 14 C -0.152 4.152 15 N -0.533 5.533 16 Si 0.759 3.241 17 H -0.203 1.203 18 H -0.202 1.202 19 H -0.195 1.195 20 C 0.001 3.999 21 C -0.154 4.154 22 C -0.062 4.062 23 N -0.288 5.288 24 C -0.123 4.123 25 C -0.125 4.125 26 S 0.558 5.442 27 H 0.110 0.890 28 H 0.084 0.916 29 H 0.087 0.913 30 H 0.076 0.924 31 H 0.072 0.928 32 H 0.258 0.742 33 H 0.198 0.802 34 H 0.059 0.941 35 H 0.055 0.945 36 H 0.082 0.918 37 H 0.103 0.897 38 H 0.087 0.913 39 H 0.068 0.932 40 H 0.080 0.920 41 H 0.104 0.896 42 H 0.054 0.946 43 H 0.047 0.953 44 H 0.097 0.903 45 H 0.092 0.908 46 H 0.075 0.925 47 H 0.100 0.900 48 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 0.112 -3.220 -4.624 5.635 hybrid contribution 0.782 -0.445 1.429 1.689 sum 0.895 -3.665 -3.194 4.943 Atomic orbital electron populations 1.21971 0.91955 1.04362 1.03057 1.21412 0.95792 0.81420 1.01377 1.44047 0.99816 1.09649 1.78726 1.25865 0.91204 1.00469 0.96263 1.66254 0.99492 1.36570 1.28505 1.21930 0.93379 0.91638 0.93811 1.25381 0.97813 0.98186 1.29892 1.16880 0.86889 0.81970 0.75520 1.90670 1.33228 1.69146 1.54789 1.47994 1.08851 1.05769 1.70186 1.19396 0.79682 0.92064 0.96992 1.21485 1.06651 1.37438 0.92487 0.93214 1.25284 0.96428 0.94187 0.99350 1.69969 1.16763 1.37160 1.29389 0.85864 0.78847 0.78228 0.81121 1.20344 1.20182 1.19475 1.21351 0.84651 0.96872 0.97059 1.21776 0.97399 1.00047 0.96134 1.21966 0.94838 1.00750 0.88670 1.61954 1.35523 1.11090 1.20224 1.22427 0.90934 0.96515 1.02386 1.22423 0.99837 0.89757 1.00499 1.86759 0.94893 0.95777 1.66789 0.88993 0.91606 0.91322 0.92442 0.92769 0.74198 0.80172 0.94074 0.94532 0.91762 0.89679 0.91269 0.93242 0.91966 0.89591 0.94582 0.95314 0.90277 0.90769 0.92481 0.90020 0.95515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.36 10.03 71.98 0.72 -1.64 16 2 C 0.13 2.89 6.64 86.38 0.57 3.46 16 3 N -0.68 -19.52 5.68 -351.33 -2.00 -21.51 16 4 C 0.23 8.30 8.05 179.43 1.44 9.74 16 5 N -0.58 -22.62 10.06 -200.64 -2.02 -24.64 16 6 C 0.16 6.28 11.15 84.48 0.94 7.22 16 7 C -0.39 -16.81 6.25 23.99 0.15 -16.66 16 8 C 0.60 27.40 7.55 86.32 0.65 28.05 16 9 O -0.59 -28.73 16.44 -4.53 -0.07 -28.81 16 10 N -0.60 -25.99 2.48 -831.35 -2.06 -28.05 16 11 C 0.24 11.14 4.75 85.63 0.41 11.55 16 12 C -0.54 -26.24 7.00 25.60 0.18 -26.06 16 13 H 0.05 2.58 7.81 -2.91 -0.02 2.56 16 14 C 0.05 2.46 5.06 84.65 0.43 2.88 16 15 N -0.90 -43.53 13.29 21.45 0.28 -43.25 16 16 Si 0.93 38.78 29.54 68.60 2.03 40.80 16 17 H -0.28 -11.94 7.11 99.48 0.71 -11.23 16 18 H -0.28 -11.28 7.11 99.48 0.71 -10.57 16 19 H -0.27 -10.73 7.11 99.48 0.71 -10.02 16 20 C 0.12 4.55 5.39 86.38 0.47 5.01 16 21 C -0.11 -3.72 5.46 30.60 0.17 -3.55 16 22 C 0.07 1.75 4.96 86.31 0.43 2.18 16 23 N -0.56 -13.99 5.02 -948.84 -4.76 -18.75 16 24 C 0.03 0.47 9.57 127.69 1.22 1.69 16 25 C 0.02 0.53 9.32 127.69 1.19 1.72 16 26 S 0.30 12.27 16.14 -56.49 -0.91 11.35 16 27 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 28 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 29 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 31 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 32 H 0.42 10.44 8.59 -92.71 -0.80 9.65 16 33 H 0.18 6.69 8.06 -2.91 -0.02 6.66 16 34 H 0.04 1.97 8.01 -2.39 -0.02 1.95 16 35 H 0.04 1.78 4.49 -21.01 -0.09 1.69 16 36 H 0.27 12.53 8.31 -92.71 -0.77 11.76 16 37 H 0.08 2.96 8.07 -2.39 -0.02 2.94 16 38 H 0.07 2.59 7.39 -2.39 -0.02 2.58 16 39 H 0.05 1.75 6.55 -2.39 -0.02 1.73 16 40 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 41 H 0.09 2.09 8.06 -2.38 -0.02 2.07 16 42 H 0.04 0.94 8.12 -2.38 -0.02 0.92 16 43 H 0.03 0.51 8.14 -2.39 -0.02 0.49 16 44 H 0.08 1.27 8.12 -2.38 -0.02 1.25 16 45 H 0.07 1.30 8.12 -2.39 -0.02 1.28 16 46 H 0.06 1.50 6.47 -2.38 -0.02 1.49 16 47 H 0.08 1.58 8.12 -2.38 -0.02 1.56 16 48 H 0.03 0.60 8.14 -2.39 -0.02 0.58 16 Total: -1.00 -59.68 400.60 -0.47 -60.15 By element: Atomic # 1 Polarization: 27.02 SS G_CDS: 0.07 Total: 27.09 kcal Atomic # 6 Polarization: 16.65 SS G_CDS: 8.97 Total: 25.62 kcal Atomic # 7 Polarization: -125.65 SS G_CDS: -10.55 Total: -136.21 kcal Atomic # 8 Polarization: -28.73 SS G_CDS: -0.07 Total: -28.81 kcal Atomic # 14 Polarization: 38.78 SS G_CDS: 2.03 Total: 40.80 kcal Atomic # 16 Polarization: 12.27 SS G_CDS: -0.91 Total: 11.35 kcal Total: -59.68 -0.47 -60.15 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000129722692.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.013 kcal (2) G-P(sol) polarization free energy of solvation -59.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds