Wall clock time and date at job start Sat Apr 11 2020 06:05:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.46795 * 2 1 4 4 N 1.46496 * 109.47012 * 120.00664 * 2 1 3 5 5 C 1.34783 * 119.99639 * 274.99471 * 4 2 1 6 6 O 1.21281 * 120.00007 * 0.02562 * 5 4 2 7 7 C 1.50693 * 120.00138 * 180.02562 * 5 4 2 8 8 H 1.09006 * 109.47207 * 300.00421 * 7 5 4 9 9 C 1.50706 * 109.46996 * 59.99882 * 7 5 4 10 10 H 1.07996 * 119.99377 * 26.77793 * 9 7 5 11 11 C 1.37877 * 120.00100 * 206.76309 * 9 7 5 12 12 N 1.31511 * 120.00102 * 353.18205 * 11 9 7 13 13 Si 1.86800 * 119.99802 * 173.44655 * 11 9 7 14 14 H 1.48500 * 109.46897 * 179.73219 * 13 11 9 15 15 H 1.48503 * 109.47422 * 299.73260 * 13 11 9 16 16 H 1.48503 * 109.47033 * 59.73164 * 13 11 9 17 17 C 1.50702 * 109.47407 * 180.02562 * 7 5 4 18 18 C 1.38230 * 120.00035 * 292.99342 * 17 7 5 19 19 C 1.38227 * 120.00096 * 179.78763 * 18 17 7 20 20 C 1.38237 * 120.00033 * 0.43760 * 19 18 17 21 21 C 1.38229 * 119.99662 * 359.81517 * 20 19 18 22 22 C 1.38234 * 119.99707 * 113.26131 * 17 7 5 23 23 C 1.50706 * 109.46933 * 240.00320 * 2 1 3 24 24 N 1.30506 * 126.36520 * 284.68967 * 23 2 1 25 25 N 1.28576 * 109.66076 * 179.88830 * 24 23 2 26 26 C 1.30678 * 109.63463 * 0.48916 * 25 24 23 27 27 N 1.35164 * 107.33416 * 359.60081 * 26 25 24 28 28 C 1.46803 * 111.15209 * 180.24100 * 27 26 25 29 29 C 1.54426 * 105.55347 * 342.93689 * 28 27 26 30 30 C 1.51340 * 142.71735 * 179.48285 * 26 25 24 31 31 H 1.09001 * 109.47516 * 299.99852 * 1 2 3 32 32 H 1.09005 * 109.47537 * 60.00041 * 1 2 3 33 33 H 1.09007 * 109.47349 * 179.97438 * 1 2 3 34 34 H 0.96996 * 120.00481 * 94.99939 * 4 2 1 35 35 H 0.97006 * 120.00141 * 354.82817 * 12 11 9 36 36 H 1.07999 * 119.99939 * 359.97438 * 18 17 7 37 37 H 1.08004 * 120.00332 * 180.27357 * 19 18 17 38 38 H 1.08003 * 120.00141 * 179.83624 * 20 19 18 39 39 H 1.08007 * 119.99707 * 179.97438 * 21 20 19 40 40 H 1.07993 * 120.00396 * 359.97438 * 22 17 7 41 41 H 1.09001 * 110.23261 * 101.95733 * 28 27 26 42 42 H 1.08994 * 110.22848 * 223.92090 * 28 27 26 43 43 H 1.08997 * 110.96502 * 267.49012 * 29 28 27 44 44 H 1.08999 * 110.95931 * 143.74962 * 29 28 27 45 45 H 1.09004 * 110.47389 * 315.25735 * 30 26 25 46 46 H 1.08995 * 110.47683 * 77.73367 * 30 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 2.1471 -0.0184 2.3571 6 8 1.8583 1.1583 2.4117 7 6 2.6499 -0.7287 3.5874 8 1 1.9777 -1.5510 3.8324 9 6 4.0316 -1.2704 3.3252 10 1 4.6694 -0.7927 2.5963 11 6 4.4812 -2.3757 4.0160 12 7 3.7614 -2.8762 4.9962 13 14 6.1165 -3.1577 3.5644 14 1 6.3725 -4.3186 4.4544 15 1 6.0728 -3.6164 2.1527 16 1 7.2041 -2.1598 3.7272 17 6 2.7000 0.2395 4.7412 18 6 3.5978 1.2904 4.7232 19 6 3.6407 2.1809 5.7795 20 6 2.7920 2.0153 6.8581 21 6 1.8978 0.9614 6.8785 22 6 1.8519 0.0733 5.8201 23 6 2.0323 -0.7104 -1.2306 24 7 2.0390 -1.9999 -1.4311 25 7 2.5356 -2.2550 -2.5893 26 6 2.8780 -1.1386 -3.1759 27 7 2.5668 -0.1289 -2.3329 28 6 2.9138 1.1733 -2.9152 29 6 3.8905 0.8632 -4.0705 30 6 3.4914 -0.5830 -4.4429 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 -0.3634 -1.0277 -0.0005 34 1 2.2490 -1.6319 1.1525 35 1 2.9519 -2.4250 5.2829 36 1 4.2636 1.4174 3.8825 37 1 4.3391 3.0046 5.7635 38 1 2.8274 2.7096 7.6847 39 1 1.2351 0.8317 7.7213 40 1 1.1532 -0.7500 5.8360 41 1 2.0198 1.6648 -3.2990 42 1 3.3998 1.8021 -2.1693 43 1 4.9247 0.9066 -3.7291 44 1 3.7296 1.5404 -4.9093 45 1 4.3715 -1.1606 -4.7256 46 1 2.7608 -0.5826 -5.2518 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001411660163.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:07 Heat of formation + Delta-G solvation = 68.818787 kcal Electronic energy + Delta-G solvation = -29507.006376 eV Core-core repulsion = 25590.796900 eV Total energy + Delta-G solvation = -3916.209476 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.47430 -39.42436 -38.00718 -37.46280 -35.31365 -33.97049 -32.35956 -30.94823 -30.44070 -30.04779 -29.47543 -27.69475 -27.10140 -24.18670 -23.53877 -22.78618 -21.66977 -21.38618 -21.07709 -20.17165 -19.44612 -17.57381 -17.21646 -16.78933 -16.02311 -15.72812 -15.69655 -14.86901 -14.63158 -14.49816 -14.01573 -13.86442 -13.80701 -13.77364 -13.66852 -13.45403 -13.13017 -12.70017 -12.51077 -12.26459 -12.11832 -12.09779 -12.00084 -11.80775 -11.62342 -11.48844 -11.29882 -10.95475 -10.83648 -10.34456 -10.31674 -10.20644 -10.20177 -10.14850 -9.16984 -8.98378 -8.85649 -8.62983 -8.58187 -8.04894 -7.67457 -6.53306 -4.30888 1.67290 2.23326 2.27498 2.32224 2.81074 3.37292 3.40644 3.45305 3.53656 3.58538 3.80783 3.98764 4.15656 4.25703 4.40345 4.43083 4.73962 4.84960 4.95231 5.00826 5.13707 5.18843 5.22405 5.27644 5.43102 5.45988 5.55355 5.64280 5.68094 5.79321 5.83728 5.89092 6.07050 6.08842 6.15103 6.29226 6.38242 6.45029 6.61713 6.68684 6.85470 6.94501 6.99865 7.27104 7.33126 7.57234 7.81012 7.93317 8.18856 8.23490 8.62551 8.71525 9.03256 9.41022 10.84618 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.011348 B = 0.003648 C = 0.003148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2466.719244 B = 7672.960269 C = 8891.996871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.235 3.765 3 H 0.095 0.905 4 N -0.717 5.717 5 C 0.539 3.461 6 O -0.564 6.564 7 C 0.046 3.954 8 H 0.067 0.933 9 C -0.594 4.594 10 H 0.055 0.945 11 C 0.035 3.965 12 N -0.892 5.892 13 Si 1.064 2.936 14 H -0.280 1.280 15 H -0.284 1.284 16 H -0.287 1.287 17 C -0.019 4.019 18 C -0.078 4.078 19 C -0.133 4.133 20 C -0.146 4.146 21 C -0.128 4.128 22 C -0.127 4.127 23 C 0.196 3.804 24 N -0.271 5.271 25 N -0.277 5.277 26 C 0.150 3.850 27 N -0.490 5.490 28 C 0.100 3.900 29 C -0.129 4.129 30 C -0.038 4.038 31 H 0.075 0.925 32 H 0.058 0.942 33 H 0.068 0.932 34 H 0.415 0.585 35 H 0.275 0.725 36 H 0.111 0.889 37 H 0.107 0.893 38 H 0.107 0.893 39 H 0.108 0.892 40 H 0.110 0.890 41 H 0.096 0.904 42 H 0.098 0.902 43 H 0.091 0.909 44 H 0.104 0.896 45 H 0.103 0.897 46 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.167 9.432 -15.351 18.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.127 3.873 3 H 0.113 0.887 4 N -0.371 5.371 5 C 0.329 3.671 6 O -0.443 6.443 7 C 0.024 3.976 8 H 0.085 0.915 9 C -0.631 4.631 10 H 0.074 0.926 11 C -0.173 4.173 12 N -0.525 5.525 13 Si 0.891 3.109 14 H -0.205 1.205 15 H -0.211 1.211 16 H -0.213 1.213 17 C -0.020 4.020 18 C -0.096 4.096 19 C -0.151 4.151 20 C -0.164 4.164 21 C -0.146 4.146 22 C -0.145 4.145 23 C -0.071 4.071 24 N -0.111 5.111 25 N -0.118 5.118 26 C -0.118 4.118 27 N -0.182 5.182 28 C -0.023 4.023 29 C -0.167 4.167 30 C -0.078 4.078 31 H 0.094 0.906 32 H 0.077 0.923 33 H 0.087 0.913 34 H 0.252 0.748 35 H 0.086 0.914 36 H 0.129 0.871 37 H 0.125 0.875 38 H 0.125 0.875 39 H 0.126 0.874 40 H 0.128 0.872 41 H 0.114 0.886 42 H 0.116 0.884 43 H 0.109 0.891 44 H 0.123 0.877 45 H 0.121 0.879 46 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -1.642 7.572 -14.563 16.496 hybrid contribution -0.611 2.214 -0.490 2.348 sum -2.252 9.785 -15.053 18.095 Atomic orbital electron populations 1.22154 0.93362 1.03334 1.02537 1.18881 0.94250 0.95188 0.78995 0.88717 1.45949 1.68270 1.15155 1.07753 1.21375 0.74192 0.86718 0.84803 1.90580 1.51314 1.16719 1.85703 1.18149 0.99505 0.93193 0.86722 0.91502 1.21508 0.98316 1.16468 1.26815 0.92631 1.25811 1.03685 0.94403 0.93358 1.70775 1.15986 1.40888 1.24843 0.83606 0.74531 0.76475 0.76253 1.20491 1.21060 1.21349 1.20113 0.92514 0.93762 0.95643 1.20773 0.97584 0.93894 0.97390 1.20976 0.99699 0.99553 0.94875 1.20822 0.98164 0.98931 0.98476 1.20889 0.99532 0.95924 0.98287 1.20982 0.99565 0.99244 0.94736 1.24599 1.01221 0.90559 0.90692 1.74421 1.17701 1.09827 1.09136 1.74016 1.14723 1.21509 1.01534 1.25963 1.03818 0.85928 0.96063 1.47151 1.45886 1.10526 1.14633 1.22450 1.00434 0.82655 0.96726 1.22814 1.00060 0.96163 0.97651 1.20632 1.01509 0.94598 0.91023 0.90567 0.92315 0.91264 0.74779 0.91381 0.87096 0.87454 0.87516 0.87357 0.87216 0.88614 0.88396 0.89062 0.87720 0.87892 0.88151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.19 9.47 37.16 0.35 -1.84 16 2 C 0.24 3.80 3.12 -69.08 -0.22 3.59 16 3 H 0.09 1.53 7.58 -51.93 -0.39 1.14 16 4 N -0.72 -13.92 4.97 -54.93 -0.27 -14.20 16 5 C 0.54 11.93 7.01 -10.99 -0.08 11.85 16 6 O -0.56 -13.17 15.12 5.56 0.08 -13.09 16 7 C 0.05 1.09 1.92 -94.07 -0.18 0.91 16 8 H 0.07 1.67 6.82 -51.93 -0.35 1.31 16 9 C -0.59 -15.37 7.43 -34.44 -0.26 -15.62 16 10 H 0.06 1.47 7.82 -52.49 -0.41 1.06 16 11 C 0.04 0.94 5.45 -17.82 -0.10 0.84 16 12 N -0.89 -25.22 13.56 55.43 0.75 -24.47 16 13 Si 1.06 24.40 29.91 -169.99 -5.08 19.31 16 14 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 15 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 16 H -0.29 -6.38 7.11 56.52 0.40 -5.98 16 17 C -0.02 -0.45 4.02 -104.63 -0.42 -0.87 16 18 C -0.08 -1.78 8.36 -39.59 -0.33 -2.11 16 19 C -0.13 -2.63 10.05 -39.59 -0.40 -3.03 16 20 C -0.15 -2.71 10.05 -39.59 -0.40 -3.10 16 21 C -0.13 -2.47 10.05 -39.59 -0.40 -2.87 16 22 C -0.13 -2.76 9.24 -39.58 -0.37 -3.12 16 23 C 0.20 3.14 7.09 -154.89 -1.10 2.04 16 24 N -0.27 -4.99 11.92 32.82 0.39 -4.60 16 25 N -0.28 -4.82 12.22 32.92 0.40 -4.42 16 26 C 0.15 1.97 8.69 -154.84 -1.35 0.62 16 27 N -0.49 -6.23 3.62 -109.38 -0.40 -6.63 16 28 C 0.10 0.74 7.77 -3.13 -0.02 0.72 16 29 C -0.13 -0.61 7.17 -25.15 -0.18 -0.79 16 30 C -0.04 -0.26 6.85 -26.74 -0.18 -0.45 16 31 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 32 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.07 1.00 8.14 -51.92 -0.42 0.58 16 34 H 0.42 8.45 8.24 -40.82 -0.34 8.11 16 35 H 0.27 7.67 6.29 -40.82 -0.26 7.41 16 36 H 0.11 2.57 7.86 -52.49 -0.41 2.16 16 37 H 0.11 1.81 8.06 -52.48 -0.42 1.39 16 38 H 0.11 1.63 8.06 -52.48 -0.42 1.21 16 39 H 0.11 1.75 8.06 -52.48 -0.42 1.33 16 40 H 0.11 2.25 7.96 -52.49 -0.42 1.83 16 41 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.09 0.44 8.14 -51.93 -0.42 0.01 16 44 H 0.10 0.19 8.14 -51.93 -0.42 -0.24 16 45 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 46 H 0.10 0.51 8.14 -51.93 -0.42 0.08 16 LS Contribution 386.39 15.07 5.82 5.82 Total: -1.00 -34.16 386.39 -10.37 -44.53 By element: Atomic # 1 Polarization: 17.42 SS G_CDS: -6.45 Total: 10.97 kcal Atomic # 6 Polarization: -7.61 SS G_CDS: -5.62 Total: -13.23 kcal Atomic # 7 Polarization: -55.20 SS G_CDS: 0.88 Total: -54.32 kcal Atomic # 8 Polarization: -13.17 SS G_CDS: 0.08 Total: -13.09 kcal Atomic # 14 Polarization: 24.40 SS G_CDS: -5.08 Total: 19.31 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -34.16 -10.37 -44.53 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001411660163.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.350 kcal (2) G-P(sol) polarization free energy of solvation -34.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.532 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds