Wall clock time and date at job start Sat Apr 11 2020 06:05:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.46795 * 2 1 4 4 N 1.46496 * 109.47012 * 120.00664 * 2 1 3 5 5 C 1.34783 * 119.99639 * 274.99471 * 4 2 1 6 6 O 1.21281 * 120.00007 * 0.02562 * 5 4 2 7 7 C 1.50693 * 120.00138 * 180.02562 * 5 4 2 8 8 H 1.09006 * 109.47207 * 300.00421 * 7 5 4 9 9 C 1.50706 * 109.46996 * 59.99882 * 7 5 4 10 10 H 1.07996 * 119.99377 * 26.77793 * 9 7 5 11 11 C 1.37877 * 120.00100 * 206.76309 * 9 7 5 12 12 N 1.31511 * 120.00102 * 353.18205 * 11 9 7 13 13 Si 1.86800 * 119.99802 * 173.44655 * 11 9 7 14 14 H 1.48500 * 109.46897 * 179.73219 * 13 11 9 15 15 H 1.48503 * 109.47422 * 299.73260 * 13 11 9 16 16 H 1.48503 * 109.47033 * 59.73164 * 13 11 9 17 17 C 1.50702 * 109.47407 * 180.02562 * 7 5 4 18 18 C 1.38230 * 120.00035 * 292.99342 * 17 7 5 19 19 C 1.38227 * 120.00096 * 179.78763 * 18 17 7 20 20 C 1.38237 * 120.00033 * 0.43760 * 19 18 17 21 21 C 1.38229 * 119.99662 * 359.81517 * 20 19 18 22 22 C 1.38234 * 119.99707 * 113.26131 * 17 7 5 23 23 C 1.50706 * 109.46933 * 240.00320 * 2 1 3 24 24 N 1.30506 * 126.36520 * 284.68967 * 23 2 1 25 25 N 1.28576 * 109.66076 * 179.88830 * 24 23 2 26 26 C 1.30678 * 109.63463 * 0.48916 * 25 24 23 27 27 N 1.35164 * 107.33416 * 359.60081 * 26 25 24 28 28 C 1.46803 * 111.15209 * 180.24100 * 27 26 25 29 29 C 1.54426 * 105.55347 * 342.93689 * 28 27 26 30 30 C 1.51340 * 142.71735 * 179.48285 * 26 25 24 31 31 H 1.09001 * 109.47516 * 299.99852 * 1 2 3 32 32 H 1.09005 * 109.47537 * 60.00041 * 1 2 3 33 33 H 1.09007 * 109.47349 * 179.97438 * 1 2 3 34 34 H 0.96996 * 120.00481 * 94.99939 * 4 2 1 35 35 H 0.97006 * 120.00141 * 354.82817 * 12 11 9 36 36 H 1.07999 * 119.99939 * 359.97438 * 18 17 7 37 37 H 1.08004 * 120.00332 * 180.27357 * 19 18 17 38 38 H 1.08003 * 120.00141 * 179.83624 * 20 19 18 39 39 H 1.08007 * 119.99707 * 179.97438 * 21 20 19 40 40 H 1.07993 * 120.00396 * 359.97438 * 22 17 7 41 41 H 1.09001 * 110.23261 * 101.95733 * 28 27 26 42 42 H 1.08994 * 110.22848 * 223.92090 * 28 27 26 43 43 H 1.08997 * 110.96502 * 267.49012 * 29 28 27 44 44 H 1.08999 * 110.95931 * 143.74962 * 29 28 27 45 45 H 1.09004 * 110.47389 * 315.25735 * 30 26 25 46 46 H 1.08995 * 110.47683 * 77.73367 * 30 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 2.1471 -0.0184 2.3571 6 8 1.8583 1.1583 2.4117 7 6 2.6499 -0.7287 3.5874 8 1 1.9777 -1.5510 3.8324 9 6 4.0316 -1.2704 3.3252 10 1 4.6694 -0.7927 2.5963 11 6 4.4812 -2.3757 4.0160 12 7 3.7614 -2.8762 4.9962 13 14 6.1165 -3.1577 3.5644 14 1 6.3725 -4.3186 4.4544 15 1 6.0728 -3.6164 2.1527 16 1 7.2041 -2.1598 3.7272 17 6 2.7000 0.2395 4.7412 18 6 3.5978 1.2904 4.7232 19 6 3.6407 2.1809 5.7795 20 6 2.7920 2.0153 6.8581 21 6 1.8978 0.9614 6.8785 22 6 1.8519 0.0733 5.8201 23 6 2.0323 -0.7104 -1.2306 24 7 2.0390 -1.9999 -1.4311 25 7 2.5356 -2.2550 -2.5893 26 6 2.8780 -1.1386 -3.1759 27 7 2.5668 -0.1289 -2.3329 28 6 2.9138 1.1733 -2.9152 29 6 3.8905 0.8632 -4.0705 30 6 3.4914 -0.5830 -4.4429 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 -0.3634 -1.0277 -0.0005 34 1 2.2490 -1.6319 1.1525 35 1 2.9519 -2.4250 5.2829 36 1 4.2636 1.4174 3.8825 37 1 4.3391 3.0046 5.7635 38 1 2.8274 2.7096 7.6847 39 1 1.2351 0.8317 7.7213 40 1 1.1532 -0.7500 5.8360 41 1 2.0198 1.6648 -3.2990 42 1 3.3998 1.8021 -2.1693 43 1 4.9247 0.9066 -3.7291 44 1 3.7296 1.5404 -4.9093 45 1 4.3715 -1.1606 -4.7256 46 1 2.7608 -0.5826 -5.2518 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001411660163.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:06 Heat of formation + Delta-G solvation = 48.700558 kcal Electronic energy + Delta-G solvation = -29507.878768 eV Core-core repulsion = 25590.796900 eV Total energy + Delta-G solvation = -3917.081868 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -44.53512 -41.13578 -39.58997 -38.28767 -36.78552 -35.90309 -33.44287 -32.72357 -31.72015 -31.64915 -30.48136 -28.85063 -28.52954 -25.87096 -25.09091 -23.56301 -23.27780 -22.67112 -22.19841 -21.43511 -21.07483 -19.37469 -18.28183 -18.03420 -17.56346 -17.23961 -17.03249 -16.30145 -15.89578 -15.73216 -15.68827 -15.39909 -15.28296 -14.85320 -14.75478 -14.35032 -14.28659 -14.08413 -14.06993 -13.87980 -13.78021 -13.30775 -13.20104 -12.89208 -12.78200 -12.65039 -12.56721 -12.52472 -12.24570 -12.01916 -11.94970 -11.80987 -11.47159 -11.08567 -10.96280 -10.73533 -10.63357 -10.29171 -10.13571 -9.66651 -9.36237 -8.65774 -6.42440 0.58594 0.64865 0.70859 1.33975 1.49499 1.56188 1.63758 1.74546 1.75500 2.33380 2.52098 2.65120 3.05794 3.08293 3.17478 3.40703 3.65229 3.82442 3.91523 3.96225 4.08927 4.20532 4.23804 4.29651 4.34914 4.37615 4.38922 4.47526 4.50150 4.63915 4.68029 4.76307 4.81044 4.82536 4.89063 4.95801 5.02825 5.07241 5.13858 5.23639 5.30662 5.39933 5.66910 5.70235 5.71227 5.75718 6.02071 6.10649 6.29461 6.45367 6.54832 7.26221 7.35062 7.57935 8.72661 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.011348 B = 0.003648 C = 0.003148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2466.719244 B = 7672.960269 C = 8891.996871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.238 3.762 3 H 0.096 0.904 4 N -0.713 5.713 5 C 0.541 3.459 6 O -0.578 6.578 7 C 0.044 3.956 8 H 0.046 0.954 9 C -0.588 4.588 10 H 0.043 0.957 11 C -0.007 4.007 12 N -0.919 5.919 13 Si 1.103 2.897 14 H -0.281 1.281 15 H -0.276 1.276 16 H -0.274 1.274 17 C -0.045 4.045 18 C -0.106 4.106 19 C -0.132 4.132 20 C -0.139 4.139 21 C -0.126 4.126 22 C -0.150 4.150 23 C 0.182 3.818 24 N -0.312 5.312 25 N -0.332 5.332 26 C 0.159 3.841 27 N -0.489 5.489 28 C 0.083 3.917 29 C -0.112 4.112 30 C -0.037 4.037 31 H 0.065 0.935 32 H 0.087 0.913 33 H 0.061 0.939 34 H 0.409 0.591 35 H 0.267 0.733 36 H 0.093 0.907 37 H 0.138 0.862 38 H 0.151 0.849 39 H 0.143 0.857 40 H 0.108 0.892 41 H 0.123 0.877 42 H 0.098 0.902 43 H 0.091 0.909 44 H 0.148 0.852 45 H 0.115 0.885 46 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.489 12.019 -16.639 20.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.131 3.869 3 H 0.114 0.886 4 N -0.364 5.364 5 C 0.330 3.670 6 O -0.459 6.459 7 C 0.023 3.977 8 H 0.064 0.936 9 C -0.626 4.626 10 H 0.062 0.938 11 C -0.209 4.209 12 N -0.554 5.554 13 Si 0.926 3.074 14 H -0.206 1.206 15 H -0.202 1.202 16 H -0.199 1.199 17 C -0.046 4.046 18 C -0.124 4.124 19 C -0.150 4.150 20 C -0.157 4.157 21 C -0.144 4.144 22 C -0.168 4.168 23 C -0.087 4.087 24 N -0.152 5.152 25 N -0.172 5.172 26 C -0.110 4.110 27 N -0.180 5.180 28 C -0.036 4.036 29 C -0.150 4.150 30 C -0.077 4.077 31 H 0.084 0.916 32 H 0.106 0.894 33 H 0.080 0.920 34 H 0.245 0.755 35 H 0.078 0.922 36 H 0.111 0.889 37 H 0.156 0.844 38 H 0.168 0.832 39 H 0.161 0.839 40 H 0.126 0.874 41 H 0.141 0.859 42 H 0.116 0.884 43 H 0.110 0.890 44 H 0.166 0.834 45 H 0.133 0.867 46 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -0.970 10.190 -15.892 18.903 hybrid contribution -0.850 1.517 -0.155 1.746 sum -1.820 11.707 -16.047 19.947 Atomic orbital electron populations 1.22063 0.91802 1.03128 1.03399 1.18997 0.95396 0.94647 0.77889 0.88610 1.45915 1.67451 1.14747 1.08332 1.21020 0.74360 0.86450 0.85125 1.90547 1.52248 1.17034 1.86028 1.18076 0.98114 0.93174 0.88368 0.93589 1.21583 0.98976 1.16208 1.25834 0.93836 1.26919 1.05853 0.95136 0.93009 1.70851 1.16550 1.41637 1.26318 0.83094 0.71952 0.76047 0.76309 1.20610 1.20190 1.19932 1.20096 0.94109 0.94495 0.95938 1.20795 0.98013 0.95187 0.98400 1.21355 1.00186 0.99401 0.94086 1.21323 0.96506 0.98891 0.98941 1.21320 0.99797 0.95072 0.98173 1.21161 0.99883 1.00297 0.95451 1.24334 1.02361 0.90412 0.91575 1.74288 1.19052 1.11482 1.10344 1.73872 1.17261 1.24065 1.02023 1.27085 1.01337 0.84924 0.97606 1.47476 1.44636 1.12497 1.13440 1.23020 1.02509 0.80545 0.97571 1.22912 0.99180 0.95227 0.97697 1.21045 1.02291 0.95563 0.88758 0.91595 0.89385 0.91996 0.75547 0.92241 0.88879 0.84368 0.83156 0.83923 0.87432 0.85947 0.88366 0.89022 0.83444 0.86697 0.85385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.16 9.47 71.98 0.68 -3.48 16 2 C 0.24 7.91 3.12 44.25 0.14 8.05 16 3 H 0.10 3.14 7.58 -2.39 -0.02 3.12 16 4 N -0.71 -29.21 4.97 -446.10 -2.22 -31.43 16 5 C 0.54 25.16 7.01 87.65 0.61 25.78 16 6 O -0.58 -27.91 15.12 -3.03 -0.05 -27.95 16 7 C 0.04 2.23 1.92 -13.03 -0.02 2.20 16 8 H 0.05 2.48 6.82 -2.38 -0.02 2.46 16 9 C -0.59 -31.84 7.43 25.60 0.19 -31.65 16 10 H 0.04 2.40 7.82 -2.91 -0.02 2.38 16 11 C -0.01 -0.39 5.45 84.65 0.46 0.07 16 12 N -0.92 -53.87 13.56 21.45 0.29 -53.58 16 13 Si 1.10 50.25 29.91 68.60 2.05 52.30 16 14 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 15 H -0.28 -12.10 7.11 99.48 0.71 -11.40 16 16 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 17 C -0.05 -2.20 4.02 -19.87 -0.08 -2.28 16 18 C -0.11 -4.87 8.36 22.27 0.19 -4.68 16 19 C -0.13 -5.01 10.05 22.27 0.22 -4.79 16 20 C -0.14 -4.73 10.05 22.27 0.22 -4.50 16 21 C -0.13 -4.61 10.05 22.27 0.22 -4.39 16 22 C -0.15 -6.61 9.24 22.27 0.21 -6.40 16 23 C 0.18 5.94 7.09 137.95 0.98 6.92 16 24 N -0.31 -12.00 11.92 -50.09 -0.60 -12.59 16 25 N -0.33 -11.85 12.22 -49.75 -0.61 -12.46 16 26 C 0.16 4.04 8.69 138.24 1.20 5.24 16 27 N -0.49 -11.98 3.62 -499.98 -1.81 -13.80 16 28 C 0.08 1.01 7.77 86.81 0.67 1.68 16 29 C -0.11 -0.61 7.17 31.62 0.23 -0.38 16 30 C -0.04 -0.39 6.85 30.59 0.21 -0.18 16 31 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 32 H 0.09 1.99 8.14 -2.38 -0.02 1.97 16 33 H 0.06 1.86 8.14 -2.38 -0.02 1.84 16 34 H 0.41 17.85 8.24 -92.71 -0.76 17.09 16 35 H 0.27 15.64 6.29 -92.70 -0.58 15.06 16 36 H 0.09 4.49 7.86 -2.91 -0.02 4.46 16 37 H 0.14 4.27 8.06 -2.91 -0.02 4.25 16 38 H 0.15 3.82 8.06 -2.91 -0.02 3.80 16 39 H 0.14 4.17 8.06 -2.91 -0.02 4.15 16 40 H 0.11 4.62 7.96 -2.91 -0.02 4.60 16 41 H 0.12 0.85 8.14 -2.39 -0.02 0.83 16 42 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 43 H 0.09 0.54 8.14 -2.39 -0.02 0.52 16 44 H 0.15 -0.36 8.14 -2.39 -0.02 -0.38 16 45 H 0.11 1.02 8.14 -2.38 -0.02 1.00 16 46 H 0.13 0.74 8.14 -2.39 -0.02 0.72 16 Total: -1.00 -79.61 386.39 3.82 -75.79 By element: Atomic # 1 Polarization: 36.11 SS G_CDS: 0.43 Total: 36.53 kcal Atomic # 6 Polarization: -19.15 SS G_CDS: 6.33 Total: -12.81 kcal Atomic # 7 Polarization: -118.91 SS G_CDS: -4.94 Total: -123.86 kcal Atomic # 8 Polarization: -27.91 SS G_CDS: -0.05 Total: -27.95 kcal Atomic # 14 Polarization: 50.25 SS G_CDS: 2.05 Total: 52.30 kcal Total: -79.61 3.82 -75.79 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001411660163.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.491 kcal (2) G-P(sol) polarization free energy of solvation -79.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.791 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds