Wall clock time and date at job start Sat Apr 11 2020 06:05:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.57775 * 2 1 4 4 C 1.53227 * 109.57811 * 239.61142 * 2 1 3 5 5 N 1.47048 * 109.58463 * 172.90715 * 4 2 1 6 6 C 1.37898 * 110.76018 * 50.50250 * 5 4 2 7 7 C 1.38870 * 127.57739 * 161.98017 * 6 5 4 8 8 C 1.46775 * 126.55160 * 359.97438 * 7 6 5 9 9 O 1.21681 * 120.00485 * 359.97438 * 8 7 6 10 10 N 1.34776 * 119.99898 * 179.97438 * 8 7 6 11 11 C 1.46504 * 120.00356 * 180.02562 * 10 8 7 12 12 C 1.50703 * 109.47286 * 180.02562 * 11 10 8 13 13 C 1.38637 * 119.74363 * 269.72381 * 12 11 10 14 14 C 1.37618 * 120.24381 * 179.72017 * 13 12 11 15 15 C 1.40716 * 119.74452 * 0.57575 * 14 13 12 16 16 C 1.41399 * 120.24206 * 179.68226 * 15 14 13 17 17 H 1.07991 * 120.00361 * 24.40239 * 16 15 14 18 18 C 1.39946 * 119.99583 * 204.40531 * 16 15 14 19 19 N 1.30822 * 120.00312 * 17.86022 * 18 16 15 20 20 Si 1.86806 * 120.00053 * 197.85430 * 18 16 15 21 21 H 1.48499 * 109.47121 * 90.00183 * 20 18 16 22 22 H 1.48500 * 109.47160 * 210.00514 * 20 18 16 23 23 H 1.48507 * 109.46936 * 330.00179 * 20 18 16 24 24 C 1.40708 * 119.51377 * 359.69647 * 15 14 13 25 25 C 1.37621 * 119.74630 * 0.02562 * 24 15 14 26 26 C 1.41631 * 106.89502 * 179.97438 * 7 6 5 27 27 N 1.30455 * 108.22952 * 0.02562 * 26 7 6 28 28 N 1.35122 * 125.25125 * 341.98262 * 6 5 4 29 29 C 1.46864 * 124.09422 * 359.97341 * 28 6 5 30 30 H 1.09002 * 109.46496 * 299.73783 * 1 2 3 31 31 H 1.08997 * 109.46984 * 59.73990 * 1 2 3 32 32 H 1.09002 * 109.46963 * 179.74505 * 1 2 3 33 33 H 1.08997 * 109.45275 * 292.91028 * 4 2 1 34 34 H 1.09005 * 109.45510 * 52.87266 * 4 2 1 35 35 H 1.00900 * 110.92688 * 286.77000 * 5 4 2 36 36 H 0.97002 * 120.00317 * 359.97438 * 10 8 7 37 37 H 1.08999 * 109.46643 * 299.99737 * 11 10 8 38 38 H 1.08996 * 109.47252 * 59.99742 * 11 10 8 39 39 H 1.07996 * 119.87631 * 359.97438 * 13 12 11 40 40 H 1.08001 * 120.12539 * 180.27720 * 14 13 12 41 41 H 0.96999 * 120.00392 * 179.97438 * 19 18 16 42 42 H 1.07997 * 120.13228 * 179.97438 * 24 15 14 43 43 H 1.08002 * 119.88284 * 179.97438 * 25 24 15 44 44 H 1.08000 * 125.88824 * 180.02562 * 26 7 6 45 45 H 1.09003 * 109.80379 * 104.34668 * 29 28 6 46 46 H 1.08996 * 109.80434 * 225.22122 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8953 1.0270 0.0000 4 6 2.0435 -0.7303 -1.2453 5 7 3.5039 -0.5846 -1.3351 6 6 4.1033 -0.9233 -0.1402 7 6 5.4364 -1.2460 0.0770 8 6 6.4998 -1.2950 -0.9335 9 8 6.2472 -1.0371 -2.0956 10 7 7.7560 -1.6257 -0.5743 11 6 8.8176 -1.6741 -1.5828 12 6 10.1162 -2.0668 -0.9267 13 6 10.9590 -1.0856 -0.4277 14 6 12.1446 -1.4329 0.1785 15 6 12.5059 -2.7891 0.2799 16 6 13.7248 -3.1574 0.8947 17 1 14.1862 -2.4993 1.6160 18 6 14.3332 -4.3747 0.5684 19 7 13.9910 -5.0044 -0.5261 20 14 15.6341 -5.1004 1.6955 21 1 14.9839 -5.9794 2.7004 22 1 16.5976 -5.8952 0.8922 23 1 16.3552 -4.0035 2.3900 24 6 11.6453 -3.7760 -0.2352 25 6 10.4619 -3.4060 -0.8322 26 6 5.5738 -1.5187 1.4600 27 7 4.4067 -1.3694 2.0233 28 7 3.4747 -0.9999 1.0534 29 6 2.0446 -0.7290 1.2496 30 1 -0.3632 0.5098 0.8924 31 1 -0.3633 0.5179 -0.8876 32 1 -0.3633 -1.0277 -0.0046 33 1 1.7881 -1.7877 -1.1771 34 1 1.5806 -0.3016 -2.1343 35 1 3.7563 0.3518 -1.6136 36 1 7.9575 -1.8310 0.3521 37 1 8.5601 -2.4082 -2.3463 38 1 8.9254 -0.6926 -2.0442 39 1 10.6821 -0.0451 -0.5114 40 1 12.7976 -0.6672 0.5705 41 1 14.4129 -5.8479 -0.7524 42 1 11.9128 -4.8199 -0.1631 43 1 9.7999 -4.1617 -1.2287 44 1 6.4874 -1.8015 1.9618 45 1 1.5052 -1.6675 1.3779 46 1 1.9053 -0.0991 2.1281 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001548724937.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:16 Heat of formation + Delta-G solvation = 53.597592 kcal Electronic energy + Delta-G solvation = -27980.186334 eV Core-core repulsion = 24063.316817 eV Total energy + Delta-G solvation = -3916.869516 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.94075 -38.92801 -37.99135 -37.50051 -34.67335 -34.31587 -33.31471 -32.12247 -30.40183 -29.42472 -29.24370 -27.30639 -26.37061 -25.59790 -23.87010 -22.45105 -21.75585 -21.01504 -20.21246 -19.97620 -19.73447 -17.93523 -17.33720 -16.57717 -16.29081 -15.96279 -15.47783 -15.35170 -14.99241 -14.89605 -14.50296 -14.16062 -14.02214 -13.68904 -13.48368 -13.26453 -13.07581 -12.91727 -12.74466 -12.58145 -12.49355 -11.98183 -11.85750 -11.78203 -11.64173 -11.52963 -11.22974 -11.13539 -11.07419 -10.53715 -10.49250 -10.20731 -9.66915 -9.47395 -9.40897 -9.21945 -9.16953 -8.55007 -8.20172 -7.50978 -7.39246 -6.81788 -4.41248 1.43940 2.00839 2.20103 2.64698 3.03624 3.05224 3.08250 3.11133 3.38385 3.67919 3.80269 3.89097 3.92250 4.00730 4.29786 4.42948 4.60022 4.67264 4.79636 4.79844 4.95856 5.06359 5.11568 5.17352 5.31036 5.39085 5.49305 5.56483 5.65777 5.90760 6.00576 6.03233 6.31543 6.35503 6.41366 6.47331 6.53504 6.92440 6.97847 7.02925 7.04659 7.24877 7.32748 7.47525 7.57079 7.78404 8.00975 8.08065 8.15631 8.25219 8.59364 8.79138 8.84087 8.92289 10.12340 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.027224 B = 0.001920 C = 0.001860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1028.262164 B =14580.638422 C =15053.481739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.146 4.146 3 H 0.085 0.915 4 C 0.046 3.954 5 N -0.579 5.579 6 C 0.326 3.674 7 C -0.290 4.290 8 C 0.588 3.412 9 O -0.551 6.551 10 N -0.717 5.717 11 C 0.188 3.812 12 C -0.242 4.242 13 C -0.070 4.070 14 C -0.229 4.229 15 C 0.116 3.884 16 C -0.460 4.460 17 H 0.079 0.921 18 C 0.076 3.924 19 N -0.788 5.788 20 Si 0.909 3.091 21 H -0.267 1.267 22 H -0.278 1.278 23 H -0.262 1.262 24 C -0.170 4.170 25 C -0.081 4.081 26 C 0.093 3.907 27 N -0.295 5.295 28 N -0.392 5.392 29 C 0.135 3.865 30 H 0.064 0.936 31 H 0.069 0.931 32 H 0.064 0.936 33 H 0.088 0.912 34 H 0.100 0.900 35 H 0.375 0.625 36 H 0.397 0.603 37 H 0.057 0.943 38 H 0.056 0.944 39 H 0.088 0.912 40 H 0.092 0.908 41 H 0.282 0.718 42 H 0.118 0.882 43 H 0.088 0.912 44 H 0.194 0.806 45 H 0.088 0.912 46 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.599 7.286 2.364 24.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.168 4.168 3 H 0.104 0.896 4 C -0.082 4.082 5 N -0.212 5.212 6 C 0.099 3.901 7 C -0.307 4.307 8 C 0.375 3.625 9 O -0.430 6.430 10 N -0.367 5.367 11 C 0.066 3.934 12 C -0.244 4.244 13 C -0.089 4.089 14 C -0.249 4.249 15 C 0.113 3.887 16 C -0.489 4.489 17 H 0.097 0.903 18 C -0.143 4.143 19 N -0.413 5.413 20 Si 0.733 3.267 21 H -0.192 1.192 22 H -0.203 1.203 23 H -0.186 1.186 24 C -0.189 4.189 25 C -0.100 4.100 26 C -0.095 4.095 27 N -0.115 5.115 28 N -0.178 5.178 29 C 0.014 3.986 30 H 0.083 0.917 31 H 0.088 0.912 32 H 0.083 0.917 33 H 0.106 0.894 34 H 0.118 0.882 35 H 0.205 0.795 36 H 0.231 0.769 37 H 0.076 0.924 38 H 0.074 0.926 39 H 0.106 0.894 40 H 0.110 0.890 41 H 0.093 0.907 42 H 0.136 0.864 43 H 0.106 0.894 44 H 0.210 0.790 45 H 0.106 0.894 46 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -24.377 6.660 2.134 25.361 hybrid contribution 0.991 0.150 0.676 1.209 sum -23.386 6.810 2.811 24.519 Atomic orbital electron populations 1.21685 0.92061 1.02993 1.03076 1.22297 0.98596 1.00514 0.95343 0.89630 1.22476 0.85720 1.02317 0.97718 1.57259 1.08286 1.32670 1.22992 1.19500 0.91442 0.96615 0.82552 1.19742 0.93054 1.22773 0.95109 1.17016 0.81656 0.76927 0.86919 1.90760 1.82588 1.50761 1.18925 1.46234 1.07896 1.69955 1.12638 1.19887 0.84052 1.00122 0.89310 1.19018 0.97594 0.93830 1.13910 1.20412 0.94475 0.96390 0.97656 1.20958 0.98714 0.95689 1.09533 1.17669 0.91879 0.90695 0.88466 1.19650 1.05214 1.02449 1.21567 0.90319 1.25943 0.97609 0.96371 0.94365 1.69824 1.37390 1.14469 1.19588 0.86303 0.80080 0.79620 0.80691 1.19212 1.20281 1.18578 1.21314 0.93594 0.99774 1.04207 1.20575 0.96529 0.94020 0.98886 1.24107 0.96589 0.96653 0.92136 1.77003 0.98176 1.23797 1.12494 1.49062 1.09009 1.55099 1.04661 1.22057 0.75531 1.01532 0.99485 0.91711 0.91209 0.91704 0.89405 0.88188 0.79474 0.76902 0.92445 0.92552 0.89373 0.88970 0.90731 0.86421 0.89355 0.78975 0.89371 0.88448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.38 9.18 37.16 0.34 -0.04 16 2 C -0.15 -0.72 2.94 -90.21 -0.27 -0.99 16 3 H 0.09 0.44 8.14 -51.93 -0.42 0.01 16 4 C 0.05 0.30 5.88 -3.63 -0.02 0.28 16 5 N -0.58 -6.16 6.19 -59.63 -0.37 -6.53 16 6 C 0.33 4.14 7.07 -153.80 -1.09 3.06 16 7 C -0.29 -4.23 6.15 -104.92 -0.64 -4.87 16 8 C 0.59 9.99 7.79 -12.81 -0.10 9.89 16 9 O -0.55 -10.87 16.37 5.21 0.09 -10.78 16 10 N -0.72 -11.87 5.54 -62.77 -0.35 -12.22 16 11 C 0.19 3.50 5.79 -5.19 -0.03 3.47 16 12 C -0.24 -5.06 5.27 -104.33 -0.55 -5.61 16 13 C -0.07 -1.52 9.67 -39.66 -0.38 -1.90 16 14 C -0.23 -5.45 9.80 -38.87 -0.38 -5.83 16 15 C 0.12 2.99 5.57 -106.83 -0.60 2.40 16 16 C -0.46 -11.89 9.05 -37.74 -0.34 -12.23 16 17 H 0.08 1.96 7.91 -52.49 -0.42 1.54 16 18 C 0.08 1.86 5.14 -17.34 -0.09 1.77 16 19 N -0.79 -20.00 10.95 55.55 0.61 -19.39 16 20 Si 0.91 18.28 29.60 -169.99 -5.03 13.25 16 21 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 22 H -0.28 -5.48 7.11 56.52 0.40 -5.08 16 23 H -0.26 -5.21 7.11 56.52 0.40 -4.81 16 24 C -0.17 -4.27 8.70 -38.87 -0.34 -4.61 16 25 C -0.08 -1.83 9.67 -39.66 -0.38 -2.21 16 26 C 0.09 1.21 11.50 -16.84 -0.19 1.02 16 27 N -0.30 -3.90 12.52 30.94 0.39 -3.52 16 28 N -0.39 -4.46 4.03 -59.58 -0.24 -4.70 16 29 C 0.13 0.95 6.73 -3.56 -0.02 0.93 16 30 H 0.06 0.15 8.14 -51.93 -0.42 -0.28 16 31 H 0.07 0.15 8.14 -51.93 -0.42 -0.27 16 32 H 0.06 0.16 8.14 -51.93 -0.42 -0.26 16 33 H 0.09 0.63 8.13 -51.93 -0.42 0.21 16 34 H 0.10 0.46 8.14 -51.93 -0.42 0.03 16 35 H 0.38 3.60 8.83 -39.29 -0.35 3.25 16 36 H 0.40 5.96 7.41 -40.82 -0.30 5.66 16 37 H 0.06 1.10 8.08 -51.93 -0.42 0.68 16 38 H 0.06 1.05 8.08 -51.93 -0.42 0.63 16 39 H 0.09 1.70 8.06 -52.49 -0.42 1.28 16 40 H 0.09 2.07 8.06 -52.49 -0.42 1.65 16 41 H 0.28 6.50 8.30 -40.82 -0.34 6.16 16 42 H 0.12 3.08 6.16 -52.49 -0.32 2.76 16 43 H 0.09 1.85 8.06 -52.49 -0.42 1.42 16 44 H 0.19 2.00 7.50 -52.49 -0.39 1.61 16 45 H 0.09 0.54 8.09 -51.93 -0.42 0.12 16 46 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 383.93 15.07 5.79 5.79 Total: -1.00 -31.38 383.93 -10.61 -41.99 By element: Atomic # 1 Polarization: 18.00 SS G_CDS: -6.40 Total: 11.60 kcal Atomic # 6 Polarization: -10.40 SS G_CDS: -5.09 Total: -15.48 kcal Atomic # 7 Polarization: -46.39 SS G_CDS: 0.04 Total: -46.36 kcal Atomic # 8 Polarization: -10.87 SS G_CDS: 0.09 Total: -10.78 kcal Atomic # 14 Polarization: 18.28 SS G_CDS: -5.03 Total: 13.25 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -31.38 -10.61 -41.99 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001548724937.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.585 kcal (2) G-P(sol) polarization free energy of solvation -31.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.987 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds