Wall clock time and date at job start Sat Apr 11 2020 06:05:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.57775 * 2 1 4 4 C 1.53227 * 109.57811 * 239.61142 * 2 1 3 5 5 N 1.47048 * 109.58463 * 172.90715 * 4 2 1 6 6 C 1.37898 * 110.76018 * 50.50250 * 5 4 2 7 7 C 1.38870 * 127.57739 * 161.98017 * 6 5 4 8 8 C 1.46775 * 126.55160 * 359.97438 * 7 6 5 9 9 O 1.21681 * 120.00485 * 359.97438 * 8 7 6 10 10 N 1.34776 * 119.99898 * 179.97438 * 8 7 6 11 11 C 1.46504 * 120.00356 * 180.02562 * 10 8 7 12 12 C 1.50703 * 109.47286 * 180.02562 * 11 10 8 13 13 C 1.38637 * 119.74363 * 269.72381 * 12 11 10 14 14 C 1.37618 * 120.24381 * 179.72017 * 13 12 11 15 15 C 1.40716 * 119.74452 * 0.57575 * 14 13 12 16 16 C 1.41399 * 120.24206 * 179.68226 * 15 14 13 17 17 H 1.07991 * 120.00361 * 24.40239 * 16 15 14 18 18 C 1.39946 * 119.99583 * 204.40531 * 16 15 14 19 19 N 1.30822 * 120.00312 * 17.86022 * 18 16 15 20 20 Si 1.86806 * 120.00053 * 197.85430 * 18 16 15 21 21 H 1.48499 * 109.47121 * 90.00183 * 20 18 16 22 22 H 1.48500 * 109.47160 * 210.00514 * 20 18 16 23 23 H 1.48507 * 109.46936 * 330.00179 * 20 18 16 24 24 C 1.40708 * 119.51377 * 359.69647 * 15 14 13 25 25 C 1.37621 * 119.74630 * 0.02562 * 24 15 14 26 26 C 1.41631 * 106.89502 * 179.97438 * 7 6 5 27 27 N 1.30455 * 108.22952 * 0.02562 * 26 7 6 28 28 N 1.35122 * 125.25125 * 341.98262 * 6 5 4 29 29 C 1.46864 * 124.09422 * 359.97341 * 28 6 5 30 30 H 1.09002 * 109.46496 * 299.73783 * 1 2 3 31 31 H 1.08997 * 109.46984 * 59.73990 * 1 2 3 32 32 H 1.09002 * 109.46963 * 179.74505 * 1 2 3 33 33 H 1.08997 * 109.45275 * 292.91028 * 4 2 1 34 34 H 1.09005 * 109.45510 * 52.87266 * 4 2 1 35 35 H 1.00900 * 110.92688 * 286.77000 * 5 4 2 36 36 H 0.97002 * 120.00317 * 359.97438 * 10 8 7 37 37 H 1.08999 * 109.46643 * 299.99737 * 11 10 8 38 38 H 1.08996 * 109.47252 * 59.99742 * 11 10 8 39 39 H 1.07996 * 119.87631 * 359.97438 * 13 12 11 40 40 H 1.08001 * 120.12539 * 180.27720 * 14 13 12 41 41 H 0.96999 * 120.00392 * 179.97438 * 19 18 16 42 42 H 1.07997 * 120.13228 * 179.97438 * 24 15 14 43 43 H 1.08002 * 119.88284 * 179.97438 * 25 24 15 44 44 H 1.08000 * 125.88824 * 180.02562 * 26 7 6 45 45 H 1.09003 * 109.80379 * 104.34668 * 29 28 6 46 46 H 1.08996 * 109.80434 * 225.22122 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8953 1.0270 0.0000 4 6 2.0435 -0.7303 -1.2453 5 7 3.5039 -0.5846 -1.3351 6 6 4.1033 -0.9233 -0.1402 7 6 5.4364 -1.2460 0.0770 8 6 6.4998 -1.2950 -0.9335 9 8 6.2472 -1.0371 -2.0956 10 7 7.7560 -1.6257 -0.5743 11 6 8.8176 -1.6741 -1.5828 12 6 10.1162 -2.0668 -0.9267 13 6 10.9590 -1.0856 -0.4277 14 6 12.1446 -1.4329 0.1785 15 6 12.5059 -2.7891 0.2799 16 6 13.7248 -3.1574 0.8947 17 1 14.1862 -2.4993 1.6160 18 6 14.3332 -4.3747 0.5684 19 7 13.9910 -5.0044 -0.5261 20 14 15.6341 -5.1004 1.6955 21 1 14.9839 -5.9794 2.7004 22 1 16.5976 -5.8952 0.8922 23 1 16.3552 -4.0035 2.3900 24 6 11.6453 -3.7760 -0.2352 25 6 10.4619 -3.4060 -0.8322 26 6 5.5738 -1.5187 1.4600 27 7 4.4067 -1.3694 2.0233 28 7 3.4747 -0.9999 1.0534 29 6 2.0446 -0.7290 1.2496 30 1 -0.3632 0.5098 0.8924 31 1 -0.3633 0.5179 -0.8876 32 1 -0.3633 -1.0277 -0.0046 33 1 1.7881 -1.7877 -1.1771 34 1 1.5806 -0.3016 -2.1343 35 1 3.7563 0.3518 -1.6136 36 1 7.9575 -1.8310 0.3521 37 1 8.5601 -2.4082 -2.3463 38 1 8.9254 -0.6926 -2.0442 39 1 10.6821 -0.0451 -0.5114 40 1 12.7976 -0.6672 0.5705 41 1 14.4129 -5.8479 -0.7524 42 1 11.9128 -4.8199 -0.1631 43 1 9.7999 -4.1617 -1.2287 44 1 6.4874 -1.8015 1.9618 45 1 1.5052 -1.6675 1.3779 46 1 1.9053 -0.0991 2.1281 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001548724937.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:15 Heat of formation + Delta-G solvation = 34.365177 kcal Electronic energy + Delta-G solvation = -27981.020314 eV Core-core repulsion = 24063.316817 eV Total energy + Delta-G solvation = -3917.703496 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.82987 -40.29014 -39.28957 -38.68769 -36.22343 -35.13778 -34.92640 -32.94157 -32.00492 -31.14832 -30.43246 -28.58326 -27.35280 -26.23058 -25.43020 -23.59997 -22.86021 -22.46823 -21.77118 -21.15576 -20.61140 -19.21134 -19.00999 -17.45466 -17.32911 -17.08532 -16.65688 -16.57754 -16.13086 -15.88426 -15.80260 -15.59162 -15.36910 -15.07462 -14.60012 -14.44657 -14.20428 -14.01568 -13.79889 -13.56722 -13.36481 -13.29229 -13.21196 -12.94982 -12.90296 -12.73657 -12.36073 -12.31979 -12.26553 -12.11434 -11.90401 -11.45186 -11.25925 -11.04199 -11.00582 -10.79447 -10.11666 -9.88420 -9.36283 -9.25059 -9.21845 -8.64446 -6.34189 0.46186 0.87497 1.14812 1.17126 1.23050 1.39819 1.50865 1.52822 2.21324 2.48946 2.55580 2.67821 2.84360 3.19099 3.51264 3.71453 3.78101 3.86983 4.03104 4.10498 4.23341 4.26276 4.35900 4.37304 4.40127 4.54279 4.57105 4.59799 4.71815 4.79168 4.91597 4.92713 5.04287 5.07795 5.13845 5.17386 5.32814 5.38712 5.43229 5.46862 5.64613 5.71827 5.81285 5.95091 6.11526 6.13934 6.24685 6.39011 6.52106 6.70899 6.83070 6.94489 7.03912 7.47079 8.32212 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.027224 B = 0.001920 C = 0.001860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1028.262164 B =14580.638422 C =15053.481739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.132 4.132 3 H 0.087 0.913 4 C 0.044 3.956 5 N -0.594 5.594 6 C 0.333 3.667 7 C -0.324 4.324 8 C 0.591 3.409 9 O -0.583 6.583 10 N -0.712 5.712 11 C 0.198 3.802 12 C -0.224 4.224 13 C -0.068 4.068 14 C -0.242 4.242 15 C 0.085 3.915 16 C -0.496 4.496 17 H 0.077 0.923 18 C 0.035 3.965 19 N -0.822 5.822 20 Si 0.982 3.018 21 H -0.262 1.262 22 H -0.269 1.269 23 H -0.258 1.258 24 C -0.192 4.192 25 C -0.083 4.083 26 C 0.095 3.905 27 N -0.314 5.314 28 N -0.387 5.387 29 C 0.122 3.878 30 H 0.072 0.928 31 H 0.080 0.920 32 H 0.068 0.932 33 H 0.081 0.919 34 H 0.123 0.877 35 H 0.380 0.620 36 H 0.405 0.595 37 H 0.052 0.948 38 H 0.060 0.940 39 H 0.116 0.884 40 H 0.098 0.902 41 H 0.289 0.711 42 H 0.100 0.900 43 H 0.103 0.897 44 H 0.210 0.790 45 H 0.099 0.901 46 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.682 8.098 2.881 27.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.153 4.153 3 H 0.106 0.894 4 C -0.084 4.084 5 N -0.228 5.228 6 C 0.104 3.896 7 C -0.341 4.341 8 C 0.380 3.620 9 O -0.465 6.465 10 N -0.363 5.363 11 C 0.076 3.924 12 C -0.225 4.225 13 C -0.086 4.086 14 C -0.261 4.261 15 C 0.082 3.918 16 C -0.526 4.526 17 H 0.095 0.905 18 C -0.180 4.180 19 N -0.448 5.448 20 Si 0.803 3.197 21 H -0.187 1.187 22 H -0.194 1.194 23 H -0.182 1.182 24 C -0.211 4.211 25 C -0.102 4.102 26 C -0.093 4.093 27 N -0.134 5.134 28 N -0.173 5.173 29 C 0.003 3.997 30 H 0.091 0.909 31 H 0.099 0.901 32 H 0.087 0.913 33 H 0.100 0.900 34 H 0.142 0.858 35 H 0.211 0.789 36 H 0.241 0.759 37 H 0.070 0.930 38 H 0.078 0.922 39 H 0.134 0.866 40 H 0.117 0.883 41 H 0.099 0.901 42 H 0.118 0.882 43 H 0.121 0.879 44 H 0.227 0.773 45 H 0.117 0.883 46 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -26.501 7.486 2.675 27.668 hybrid contribution 1.410 -0.026 0.431 1.474 sum -25.091 7.460 3.106 26.360 Atomic orbital electron populations 1.21672 0.89936 1.03591 1.04050 1.22218 1.00026 0.99844 0.93259 0.89447 1.22647 0.83493 1.02511 0.99725 1.57269 1.10694 1.32888 1.21968 1.19636 0.91153 0.95267 0.83531 1.19627 0.93429 1.25769 0.95293 1.17267 0.81855 0.75942 0.86948 1.90733 1.83043 1.52366 1.20331 1.46007 1.07544 1.70116 1.12609 1.19667 0.83336 1.00066 0.89363 1.19214 0.98203 0.93029 1.12099 1.20684 0.93541 0.97951 0.96465 1.21148 0.99798 0.95124 1.10046 1.18008 0.92502 0.91829 0.89420 1.19888 1.06054 1.03925 1.22699 0.90489 1.26772 0.99626 0.96182 0.95442 1.69876 1.38834 1.15073 1.20971 0.85206 0.77277 0.78738 0.78517 1.18681 1.19369 1.18157 1.21260 0.94858 0.98988 1.06004 1.20753 0.95869 0.95275 0.98254 1.24363 0.97273 0.96077 0.91577 1.76948 0.98572 1.24412 1.13433 1.49381 1.10199 1.53926 1.03816 1.22517 0.73307 1.02688 1.01173 0.90862 0.90139 0.91312 0.90014 0.85840 0.78889 0.75933 0.92981 0.92171 0.86580 0.88342 0.90077 0.88186 0.87935 0.77327 0.88303 0.87216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.30 9.18 71.98 0.66 0.36 16 2 C -0.13 -0.96 2.94 -10.53 -0.03 -1.00 16 3 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 4 C 0.04 0.48 5.88 86.35 0.51 0.99 16 5 N -0.59 -11.89 6.19 -342.56 -2.12 -14.01 16 6 C 0.33 8.13 7.07 132.54 0.94 9.07 16 7 C -0.32 -9.25 6.15 -20.06 -0.12 -9.37 16 8 C 0.59 19.76 7.79 86.47 0.67 20.44 16 9 O -0.58 -22.78 16.37 -4.29 -0.07 -22.85 16 10 N -0.71 -22.92 5.54 -470.72 -2.61 -25.53 16 11 C 0.20 7.16 5.79 85.63 0.50 7.65 16 12 C -0.22 -9.19 5.27 -19.67 -0.10 -9.29 16 13 C -0.07 -2.85 9.67 22.22 0.21 -2.64 16 14 C -0.24 -11.55 9.80 22.73 0.22 -11.33 16 15 C 0.08 4.52 5.57 -21.29 -0.12 4.40 16 16 C -0.50 -26.47 9.05 23.46 0.21 -26.26 16 17 H 0.08 3.96 7.91 -2.92 -0.02 3.93 16 18 C 0.04 1.76 5.14 85.26 0.44 2.20 16 19 N -0.82 -42.86 10.95 21.83 0.24 -42.62 16 20 Si 0.98 37.88 29.60 68.60 2.03 39.91 16 21 H -0.26 -9.82 7.11 99.48 0.71 -9.11 16 22 H -0.27 -9.90 7.11 99.48 0.71 -9.20 16 23 H -0.26 -9.67 7.11 99.48 0.71 -8.96 16 24 C -0.19 -9.93 8.70 22.73 0.20 -9.74 16 25 C -0.08 -3.74 9.67 22.22 0.21 -3.53 16 26 C 0.10 2.39 11.50 85.73 0.99 3.38 16 27 N -0.31 -7.95 12.52 -56.04 -0.70 -8.65 16 28 N -0.39 -8.25 4.03 -342.40 -1.38 -9.63 16 29 C 0.12 1.45 6.73 86.50 0.58 2.03 16 30 H 0.07 0.09 8.14 -2.39 -0.02 0.07 16 31 H 0.08 0.06 8.14 -2.39 -0.02 0.04 16 32 H 0.07 0.13 8.14 -2.39 -0.02 0.11 16 33 H 0.08 1.02 8.13 -2.39 -0.02 1.00 16 34 H 0.12 0.78 8.14 -2.38 -0.02 0.76 16 35 H 0.38 6.87 8.83 -89.69 -0.79 6.08 16 36 H 0.41 11.76 7.41 -92.71 -0.69 11.07 16 37 H 0.05 1.95 8.08 -2.39 -0.02 1.94 16 38 H 0.06 2.15 8.08 -2.39 -0.02 2.14 16 39 H 0.12 4.22 8.06 -2.91 -0.02 4.19 16 40 H 0.10 4.47 8.06 -2.91 -0.02 4.44 16 41 H 0.29 13.61 8.30 -92.71 -0.77 12.84 16 42 H 0.10 5.47 6.16 -2.91 -0.02 5.45 16 43 H 0.10 4.27 8.06 -2.91 -0.02 4.25 16 44 H 0.21 4.16 7.50 -2.91 -0.02 4.14 16 45 H 0.10 0.99 8.09 -2.39 -0.02 0.97 16 46 H 0.11 1.06 8.14 -2.39 -0.02 1.04 16 Total: -1.00 -69.09 383.93 0.90 -68.19 By element: Atomic # 1 Polarization: 38.28 SS G_CDS: -0.45 Total: 37.82 kcal Atomic # 6 Polarization: -28.60 SS G_CDS: 5.97 Total: -22.63 kcal Atomic # 7 Polarization: -93.87 SS G_CDS: -6.57 Total: -100.44 kcal Atomic # 8 Polarization: -22.78 SS G_CDS: -0.07 Total: -22.85 kcal Atomic # 14 Polarization: 37.88 SS G_CDS: 2.03 Total: 39.91 kcal Total: -69.09 0.90 -68.19 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001548724937.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.558 kcal (2) G-P(sol) polarization free energy of solvation -69.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.192 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds