Wall clock time and date at job start Sat Apr 11 2020 06:05:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.57369 * 2 1 4 4 C 1.53226 * 109.57874 * 120.25604 * 2 1 3 5 5 N 1.47080 * 109.54097 * 187.24827 * 4 2 1 6 6 C 1.37884 * 110.75350 * 309.39720 * 5 4 2 7 7 C 1.38871 * 127.58906 * 198.11191 * 6 5 4 8 8 C 1.46772 * 126.55169 * 0.02562 * 7 6 5 9 9 O 1.21691 * 119.99850 * 0.03036 * 8 7 6 10 10 N 1.34780 * 120.00117 * 180.02562 * 8 7 6 11 11 C 1.46496 * 119.99869 * 180.02562 * 10 8 7 12 12 C 1.50706 * 109.46893 * 180.02562 * 11 10 8 13 13 C 1.38634 * 119.74594 * 269.72621 * 12 11 10 14 14 C 1.37620 * 120.24629 * 179.71992 * 13 12 11 15 15 C 1.40715 * 119.74306 * 0.57236 * 14 13 12 16 16 C 1.41400 * 120.24422 * 179.68303 * 15 14 13 17 17 H 1.07996 * 120.00103 * 24.41190 * 16 15 14 18 18 C 1.39950 * 119.99685 * 204.41052 * 16 15 14 19 19 N 1.30819 * 120.00001 * 17.85560 * 18 16 15 20 20 Si 1.86801 * 119.99841 * 197.85206 * 18 16 15 21 21 H 1.48509 * 109.46982 * 59.99973 * 20 18 16 22 22 H 1.48490 * 109.47357 * 179.97438 * 20 18 16 23 23 H 1.48499 * 109.47132 * 300.00689 * 20 18 16 24 24 C 1.40719 * 119.51391 * 359.70297 * 15 14 13 25 25 C 1.37616 * 119.74006 * 359.97438 * 24 15 14 26 26 C 1.41633 * 106.89632 * 180.02562 * 7 6 5 27 27 N 1.30457 * 108.22711 * 0.02562 * 26 7 6 28 28 N 1.35123 * 125.23967 * 18.15492 * 6 5 4 29 29 C 1.46871 * 124.09565 * 359.94426 * 28 6 5 30 30 H 1.09000 * 109.47317 * 299.73868 * 1 2 3 31 31 H 1.08996 * 109.46981 * 59.74926 * 1 2 3 32 32 H 1.09010 * 109.46802 * 179.74153 * 1 2 3 33 33 H 1.08998 * 109.45320 * 307.26417 * 4 2 1 34 34 H 1.08994 * 109.45445 * 67.22957 * 4 2 1 35 35 H 1.00904 * 110.99906 * 73.19422 * 5 4 2 36 36 H 0.97001 * 119.99760 * 359.97438 * 10 8 7 37 37 H 1.08999 * 109.47434 * 299.99661 * 11 10 8 38 38 H 1.08997 * 109.47266 * 60.00255 * 11 10 8 39 39 H 1.08002 * 119.88017 * 359.97438 * 13 12 11 40 40 H 1.08005 * 120.12982 * 180.27761 * 14 13 12 41 41 H 0.97000 * 119.99592 * 180.02562 * 19 18 16 42 42 H 1.07993 * 120.12889 * 179.97438 * 24 15 14 43 43 H 1.08004 * 119.87415 * 180.02562 * 25 24 15 44 44 H 1.07997 * 125.88557 * 180.02562 * 26 7 6 45 45 H 1.08995 * 109.79693 * 255.64337 * 29 28 6 46 46 H 1.08998 * 109.84897 * 134.80503 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8951 1.0270 0.0000 4 6 2.0434 -0.7274 1.2470 5 7 3.5038 -0.5777 1.3375 6 6 4.1048 -0.9188 0.1443 7 6 5.4384 -1.2406 -0.0709 8 6 6.5009 -1.2860 0.9407 9 8 6.2469 -1.0255 2.1019 10 7 7.7578 -1.6162 0.5835 11 6 8.8182 -1.6621 1.5933 12 6 10.1182 -2.0536 0.9392 13 6 10.4683 -3.3921 0.8513 14 6 11.6502 -3.7615 0.2510 15 6 12.5102 -2.7739 -0.2639 16 6 13.7304 -3.1412 -0.8768 17 1 13.8437 -4.1251 -1.3075 18 6 14.7912 -2.2297 -0.9254 19 7 14.8013 -1.1945 -0.1256 20 14 16.1928 -2.4912 -2.1324 21 1 15.6587 -2.4944 -3.5181 22 1 17.1828 -1.3941 -1.9866 23 1 16.8506 -3.7928 -1.8525 24 6 12.1473 -1.4180 -0.1639 25 6 10.9573 -1.0722 0.4345 26 6 5.5774 -1.5166 -1.4531 27 7 4.4108 -1.3689 -2.0180 28 7 3.4775 -0.9982 -1.0499 29 6 2.0472 -0.7299 -1.2480 30 1 -0.3634 0.5098 0.8923 31 1 -0.3633 0.5177 -0.8877 32 1 -0.3633 -1.0278 -0.0046 33 1 1.5788 -0.2983 2.1347 34 1 1.7903 -1.7854 1.1801 35 1 3.7548 0.3596 1.6142 36 1 7.9602 -1.8243 -0.3421 37 1 8.9247 -0.6796 2.0532 38 1 8.5605 -2.3951 2.3577 39 1 9.8091 -4.1481 1.2518 40 1 11.9190 -4.8052 0.1796 41 1 15.5364 -0.5625 -0.1596 42 1 12.8000 -0.6519 -0.5553 43 1 10.6764 -0.0322 0.5120 44 1 6.4916 -1.8005 -1.9532 45 1 1.5096 -1.6694 -1.3756 46 1 1.9068 -0.1019 -2.1278 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001548724938.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:19 Heat of formation + Delta-G solvation = 53.655702 kcal Electronic energy + Delta-G solvation = -27980.145293 eV Core-core repulsion = 24063.278296 eV Total energy + Delta-G solvation = -3916.866997 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.93941 -38.92598 -37.98942 -37.49879 -34.67163 -34.31265 -33.31492 -32.12245 -30.40112 -29.42358 -29.24181 -27.30749 -26.37134 -25.59796 -23.86910 -22.45002 -21.75420 -21.01418 -20.21231 -19.97593 -19.73360 -17.93371 -17.33617 -16.57522 -16.28944 -15.96059 -15.51655 -15.28534 -15.01578 -14.90905 -14.49137 -14.17004 -14.01999 -13.68325 -13.48490 -13.26319 -13.08023 -12.91460 -12.74567 -12.58021 -12.48768 -11.98004 -11.85676 -11.78497 -11.64156 -11.53081 -11.23457 -11.10983 -11.07110 -10.55477 -10.50751 -10.20465 -9.67563 -9.47208 -9.41160 -9.21860 -9.16028 -8.54932 -8.20102 -7.50961 -7.39085 -6.81858 -4.41164 1.43970 2.00866 2.20135 2.65646 3.03483 3.04981 3.05927 3.12646 3.38308 3.67958 3.80365 3.88859 3.92275 4.00723 4.29978 4.43058 4.60078 4.67321 4.79603 4.79872 4.95961 5.06390 5.11630 5.17435 5.31089 5.39126 5.49275 5.56523 5.65883 5.90850 6.00799 6.03127 6.31827 6.35708 6.41759 6.46908 6.53666 6.92475 6.97930 7.02744 7.04757 7.24966 7.32773 7.47571 7.57049 7.78557 8.00684 8.08130 8.15655 8.25272 8.59088 8.79176 8.83992 8.92324 10.12236 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.027149 B = 0.001921 C = 0.001859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1031.081727 B =14573.753432 C =15055.429124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.146 4.146 3 H 0.085 0.915 4 C 0.047 3.953 5 N -0.580 5.580 6 C 0.326 3.674 7 C -0.290 4.290 8 C 0.588 3.412 9 O -0.551 6.551 10 N -0.717 5.717 11 C 0.188 3.812 12 C -0.242 4.242 13 C -0.070 4.070 14 C -0.229 4.229 15 C 0.116 3.884 16 C -0.460 4.460 17 H 0.078 0.922 18 C 0.076 3.924 19 N -0.788 5.788 20 Si 0.909 3.091 21 H -0.263 1.263 22 H -0.278 1.278 23 H -0.265 1.265 24 C -0.170 4.170 25 C -0.081 4.081 26 C 0.093 3.907 27 N -0.295 5.295 28 N -0.392 5.392 29 C 0.135 3.865 30 H 0.069 0.931 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.100 0.900 34 H 0.087 0.913 35 H 0.376 0.624 36 H 0.397 0.603 37 H 0.057 0.943 38 H 0.056 0.944 39 H 0.088 0.912 40 H 0.092 0.908 41 H 0.282 0.718 42 H 0.118 0.882 43 H 0.088 0.912 44 H 0.194 0.806 45 H 0.088 0.912 46 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.235 4.209 -1.860 24.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.168 4.168 3 H 0.104 0.896 4 C -0.082 4.082 5 N -0.213 5.213 6 C 0.099 3.901 7 C -0.307 4.307 8 C 0.375 3.625 9 O -0.430 6.430 10 N -0.367 5.367 11 C 0.066 3.934 12 C -0.244 4.244 13 C -0.089 4.089 14 C -0.249 4.249 15 C 0.113 3.887 16 C -0.489 4.489 17 H 0.096 0.904 18 C -0.143 4.143 19 N -0.413 5.413 20 Si 0.733 3.267 21 H -0.188 1.188 22 H -0.203 1.203 23 H -0.190 1.190 24 C -0.189 4.189 25 C -0.100 4.100 26 C -0.095 4.095 27 N -0.115 5.115 28 N -0.178 5.178 29 C 0.014 3.986 30 H 0.088 0.912 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.118 0.882 34 H 0.106 0.894 35 H 0.206 0.794 36 H 0.231 0.769 37 H 0.075 0.925 38 H 0.075 0.925 39 H 0.107 0.893 40 H 0.110 0.890 41 H 0.093 0.907 42 H 0.136 0.864 43 H 0.106 0.894 44 H 0.210 0.790 45 H 0.106 0.894 46 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -24.925 4.004 -1.704 25.302 hybrid contribution 1.074 0.504 -0.738 1.398 sum -23.851 4.508 -2.442 24.396 Atomic orbital electron populations 1.21683 0.92052 1.02981 1.03084 1.22294 0.98585 1.00532 0.95351 0.89642 1.22479 0.85708 1.02320 0.97696 1.57233 1.08310 1.32550 1.23176 1.19495 0.91449 0.96609 0.82538 1.19742 0.93030 1.22763 0.95141 1.17020 0.81659 0.76931 0.86915 1.90763 1.82573 1.50697 1.19008 1.46232 1.07871 1.69926 1.12688 1.19886 0.84040 1.00195 0.89246 1.19016 0.97566 0.93682 1.14109 1.20420 0.95988 0.94182 0.98314 1.20961 0.97892 0.97880 1.08167 1.17664 0.91663 0.91498 0.87854 1.19613 0.96433 1.00203 1.32649 0.90368 1.25940 0.99669 0.94113 0.94543 1.69817 1.30905 1.10902 1.29662 0.86358 0.79876 0.78974 0.81494 1.18764 1.20308 1.18956 1.21309 0.96007 0.96956 1.04641 1.20563 0.94748 0.96425 0.98285 1.24107 0.96599 0.96658 0.92119 1.77003 0.98139 1.23788 1.12540 1.49064 1.08983 1.55103 1.04685 1.22047 0.75508 1.01544 0.99490 0.91203 0.91712 0.91712 0.88191 0.89413 0.79437 0.76900 0.92481 0.92519 0.89346 0.88963 0.90686 0.86430 0.89389 0.78975 0.89382 0.88446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.38 9.19 37.16 0.34 -0.04 16 2 C -0.15 -0.73 2.93 -90.22 -0.26 -0.99 16 3 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 4 C 0.05 0.31 5.89 -3.61 -0.02 0.28 16 5 N -0.58 -6.17 6.19 -59.61 -0.37 -6.54 16 6 C 0.33 4.15 7.07 -153.82 -1.09 3.06 16 7 C -0.29 -4.23 6.15 -104.92 -0.64 -4.87 16 8 C 0.59 10.00 7.79 -12.81 -0.10 9.90 16 9 O -0.55 -10.87 16.37 5.20 0.09 -10.78 16 10 N -0.72 -11.87 5.54 -62.77 -0.35 -12.22 16 11 C 0.19 3.50 5.79 -5.19 -0.03 3.47 16 12 C -0.24 -5.07 5.27 -104.33 -0.55 -5.62 16 13 C -0.07 -1.52 9.67 -39.66 -0.38 -1.90 16 14 C -0.23 -5.46 9.80 -38.87 -0.38 -5.85 16 15 C 0.12 3.00 5.58 -106.82 -0.60 2.41 16 16 C -0.46 -11.90 9.06 -37.74 -0.34 -12.24 16 17 H 0.08 1.94 7.91 -52.49 -0.42 1.53 16 18 C 0.08 1.86 5.14 -17.34 -0.09 1.77 16 19 N -0.79 -19.96 10.95 55.55 0.61 -19.35 16 20 Si 0.91 18.25 29.60 -169.99 -5.03 13.21 16 21 H -0.26 -5.24 7.11 56.52 0.40 -4.84 16 22 H -0.28 -5.45 7.11 56.52 0.40 -5.05 16 23 H -0.26 -5.26 7.11 56.52 0.40 -4.86 16 24 C -0.17 -4.27 8.70 -38.87 -0.34 -4.60 16 25 C -0.08 -1.82 9.67 -39.66 -0.38 -2.21 16 26 C 0.09 1.21 11.50 -16.84 -0.19 1.02 16 27 N -0.30 -3.90 12.52 30.94 0.39 -3.52 16 28 N -0.39 -4.47 4.03 -59.58 -0.24 -4.71 16 29 C 0.13 0.95 6.73 -3.55 -0.02 0.93 16 30 H 0.07 0.15 8.14 -51.93 -0.42 -0.27 16 31 H 0.06 0.15 8.14 -51.93 -0.42 -0.28 16 32 H 0.06 0.16 8.14 -51.92 -0.42 -0.26 16 33 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.09 0.63 8.13 -51.93 -0.42 0.20 16 35 H 0.38 3.63 8.83 -39.29 -0.35 3.28 16 36 H 0.40 5.97 7.41 -40.82 -0.30 5.66 16 37 H 0.06 1.08 8.08 -51.93 -0.42 0.66 16 38 H 0.06 1.07 8.08 -51.93 -0.42 0.65 16 39 H 0.09 1.73 8.06 -52.49 -0.42 1.30 16 40 H 0.09 2.08 8.06 -52.48 -0.42 1.66 16 41 H 0.28 6.52 8.30 -40.82 -0.34 6.18 16 42 H 0.12 3.06 6.15 -52.49 -0.32 2.74 16 43 H 0.09 1.82 8.06 -52.48 -0.42 1.40 16 44 H 0.19 2.00 7.50 -52.49 -0.39 1.61 16 45 H 0.09 0.54 8.09 -51.93 -0.42 0.12 16 46 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 383.94 15.07 5.79 5.79 Total: -1.00 -31.33 383.94 -10.61 -41.94 By element: Atomic # 1 Polarization: 18.07 SS G_CDS: -6.40 Total: 11.66 kcal Atomic # 6 Polarization: -10.39 SS G_CDS: -5.09 Total: -15.48 kcal Atomic # 7 Polarization: -46.37 SS G_CDS: 0.04 Total: -46.33 kcal Atomic # 8 Polarization: -10.87 SS G_CDS: 0.09 Total: -10.78 kcal Atomic # 14 Polarization: 18.25 SS G_CDS: -5.03 Total: 13.21 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -31.33 -10.61 -41.94 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001548724938.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.591 kcal (2) G-P(sol) polarization free energy of solvation -31.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.936 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds