Wall clock time and date at job start Sat Apr 11 2020 06:05:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.57369 * 2 1 4 4 C 1.53226 * 109.57874 * 120.25604 * 2 1 3 5 5 N 1.47080 * 109.54097 * 187.24827 * 4 2 1 6 6 C 1.37884 * 110.75350 * 309.39720 * 5 4 2 7 7 C 1.38871 * 127.58906 * 198.11191 * 6 5 4 8 8 C 1.46772 * 126.55169 * 0.02562 * 7 6 5 9 9 O 1.21691 * 119.99850 * 0.03036 * 8 7 6 10 10 N 1.34780 * 120.00117 * 180.02562 * 8 7 6 11 11 C 1.46496 * 119.99869 * 180.02562 * 10 8 7 12 12 C 1.50706 * 109.46893 * 180.02562 * 11 10 8 13 13 C 1.38634 * 119.74594 * 269.72621 * 12 11 10 14 14 C 1.37620 * 120.24629 * 179.71992 * 13 12 11 15 15 C 1.40715 * 119.74306 * 0.57236 * 14 13 12 16 16 C 1.41400 * 120.24422 * 179.68303 * 15 14 13 17 17 H 1.07996 * 120.00103 * 24.41190 * 16 15 14 18 18 C 1.39950 * 119.99685 * 204.41052 * 16 15 14 19 19 N 1.30819 * 120.00001 * 17.85560 * 18 16 15 20 20 Si 1.86801 * 119.99841 * 197.85206 * 18 16 15 21 21 H 1.48509 * 109.46982 * 59.99973 * 20 18 16 22 22 H 1.48490 * 109.47357 * 179.97438 * 20 18 16 23 23 H 1.48499 * 109.47132 * 300.00689 * 20 18 16 24 24 C 1.40719 * 119.51391 * 359.70297 * 15 14 13 25 25 C 1.37616 * 119.74006 * 359.97438 * 24 15 14 26 26 C 1.41633 * 106.89632 * 180.02562 * 7 6 5 27 27 N 1.30457 * 108.22711 * 0.02562 * 26 7 6 28 28 N 1.35123 * 125.23967 * 18.15492 * 6 5 4 29 29 C 1.46871 * 124.09565 * 359.94426 * 28 6 5 30 30 H 1.09000 * 109.47317 * 299.73868 * 1 2 3 31 31 H 1.08996 * 109.46981 * 59.74926 * 1 2 3 32 32 H 1.09010 * 109.46802 * 179.74153 * 1 2 3 33 33 H 1.08998 * 109.45320 * 307.26417 * 4 2 1 34 34 H 1.08994 * 109.45445 * 67.22957 * 4 2 1 35 35 H 1.00904 * 110.99906 * 73.19422 * 5 4 2 36 36 H 0.97001 * 119.99760 * 359.97438 * 10 8 7 37 37 H 1.08999 * 109.47434 * 299.99661 * 11 10 8 38 38 H 1.08997 * 109.47266 * 60.00255 * 11 10 8 39 39 H 1.08002 * 119.88017 * 359.97438 * 13 12 11 40 40 H 1.08005 * 120.12982 * 180.27761 * 14 13 12 41 41 H 0.97000 * 119.99592 * 180.02562 * 19 18 16 42 42 H 1.07993 * 120.12889 * 179.97438 * 24 15 14 43 43 H 1.08004 * 119.87415 * 180.02562 * 25 24 15 44 44 H 1.07997 * 125.88557 * 180.02562 * 26 7 6 45 45 H 1.08995 * 109.79693 * 255.64337 * 29 28 6 46 46 H 1.08998 * 109.84897 * 134.80503 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8951 1.0270 0.0000 4 6 2.0434 -0.7274 1.2470 5 7 3.5038 -0.5777 1.3375 6 6 4.1048 -0.9188 0.1443 7 6 5.4384 -1.2406 -0.0709 8 6 6.5009 -1.2860 0.9407 9 8 6.2469 -1.0255 2.1019 10 7 7.7578 -1.6162 0.5835 11 6 8.8182 -1.6621 1.5933 12 6 10.1182 -2.0536 0.9392 13 6 10.4683 -3.3921 0.8513 14 6 11.6502 -3.7615 0.2510 15 6 12.5102 -2.7739 -0.2639 16 6 13.7304 -3.1412 -0.8768 17 1 13.8437 -4.1251 -1.3075 18 6 14.7912 -2.2297 -0.9254 19 7 14.8013 -1.1945 -0.1256 20 14 16.1928 -2.4912 -2.1324 21 1 15.6587 -2.4944 -3.5181 22 1 17.1828 -1.3941 -1.9866 23 1 16.8506 -3.7928 -1.8525 24 6 12.1473 -1.4180 -0.1639 25 6 10.9573 -1.0722 0.4345 26 6 5.5774 -1.5166 -1.4531 27 7 4.4108 -1.3689 -2.0180 28 7 3.4775 -0.9982 -1.0499 29 6 2.0472 -0.7299 -1.2480 30 1 -0.3634 0.5098 0.8923 31 1 -0.3633 0.5177 -0.8877 32 1 -0.3633 -1.0278 -0.0046 33 1 1.5788 -0.2983 2.1347 34 1 1.7903 -1.7854 1.1801 35 1 3.7548 0.3596 1.6142 36 1 7.9602 -1.8243 -0.3421 37 1 8.9247 -0.6796 2.0532 38 1 8.5605 -2.3951 2.3577 39 1 9.8091 -4.1481 1.2518 40 1 11.9190 -4.8052 0.1796 41 1 15.5364 -0.5625 -0.1596 42 1 12.8000 -0.6519 -0.5553 43 1 10.6764 -0.0322 0.5120 44 1 6.4916 -1.8005 -1.9532 45 1 1.5096 -1.6694 -1.3756 46 1 1.9068 -0.1019 -2.1278 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001548724938.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:18 Heat of formation + Delta-G solvation = 34.486328 kcal Electronic energy + Delta-G solvation = -27980.976539 eV Core-core repulsion = 24063.278296 eV Total energy + Delta-G solvation = -3917.698243 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.82909 -40.28874 -39.28785 -38.68584 -36.22262 -35.13457 -34.92522 -32.94179 -32.00404 -31.14700 -30.43068 -28.58214 -27.35508 -26.22984 -25.42899 -23.59954 -22.85889 -22.46761 -21.76985 -21.15609 -20.61127 -19.20897 -19.00917 -17.44837 -17.32779 -17.10063 -16.62278 -16.58085 -16.15640 -15.91582 -15.75144 -15.60194 -15.36968 -15.07603 -14.59764 -14.44591 -14.19868 -14.01592 -13.79702 -13.57262 -13.36359 -13.28628 -13.21621 -12.94832 -12.89685 -12.72199 -12.35841 -12.32334 -12.26591 -12.13458 -11.90401 -11.45983 -11.26042 -11.02876 -11.00448 -10.79343 -10.11615 -9.88414 -9.36075 -9.25212 -9.21702 -8.64289 -6.33959 0.46116 0.88185 1.14890 1.17034 1.23139 1.39850 1.50079 1.53528 2.21420 2.49368 2.55261 2.67737 2.84502 3.19057 3.51173 3.71493 3.78206 3.87105 4.03113 4.10490 4.23346 4.26280 4.36019 4.37309 4.40096 4.54354 4.57198 4.59827 4.71757 4.79236 4.91611 4.92737 5.04243 5.07727 5.13826 5.17261 5.32771 5.38789 5.43261 5.46964 5.64632 5.71875 5.80981 5.95235 6.11393 6.13931 6.24724 6.39193 6.52081 6.70786 6.83050 6.94528 7.03986 7.47054 8.32198 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.027149 B = 0.001921 C = 0.001859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1031.081727 B =14573.753432 C =15055.429124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.133 4.133 3 H 0.086 0.914 4 C 0.044 3.956 5 N -0.594 5.594 6 C 0.334 3.666 7 C -0.324 4.324 8 C 0.590 3.410 9 O -0.583 6.583 10 N -0.712 5.712 11 C 0.198 3.802 12 C -0.224 4.224 13 C -0.069 4.069 14 C -0.242 4.242 15 C 0.085 3.915 16 C -0.497 4.497 17 H 0.077 0.923 18 C 0.036 3.964 19 N -0.821 5.821 20 Si 0.981 3.019 21 H -0.260 1.260 22 H -0.268 1.268 23 H -0.260 1.260 24 C -0.191 4.191 25 C -0.082 4.082 26 C 0.095 3.905 27 N -0.314 5.314 28 N -0.387 5.387 29 C 0.123 3.877 30 H 0.080 0.920 31 H 0.072 0.928 32 H 0.068 0.932 33 H 0.123 0.877 34 H 0.082 0.918 35 H 0.380 0.620 36 H 0.405 0.595 37 H 0.055 0.945 38 H 0.057 0.943 39 H 0.114 0.886 40 H 0.098 0.902 41 H 0.289 0.711 42 H 0.101 0.899 43 H 0.104 0.896 44 H 0.210 0.790 45 H 0.100 0.900 46 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.430 4.437 -2.276 26.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.154 4.154 3 H 0.104 0.896 4 C -0.083 4.083 5 N -0.229 5.229 6 C 0.104 3.896 7 C -0.341 4.341 8 C 0.380 3.620 9 O -0.465 6.465 10 N -0.363 5.363 11 C 0.076 3.924 12 C -0.226 4.226 13 C -0.087 4.087 14 C -0.262 4.262 15 C 0.083 3.917 16 C -0.526 4.526 17 H 0.095 0.905 18 C -0.180 4.180 19 N -0.447 5.447 20 Si 0.802 3.198 21 H -0.184 1.184 22 H -0.193 1.193 23 H -0.184 1.184 24 C -0.211 4.211 25 C -0.100 4.100 26 C -0.093 4.093 27 N -0.134 5.134 28 N -0.173 5.173 29 C 0.003 3.997 30 H 0.099 0.901 31 H 0.091 0.909 32 H 0.087 0.913 33 H 0.141 0.859 34 H 0.101 0.899 35 H 0.211 0.789 36 H 0.241 0.759 37 H 0.073 0.927 38 H 0.076 0.924 39 H 0.132 0.868 40 H 0.116 0.884 41 H 0.099 0.901 42 H 0.119 0.881 43 H 0.122 0.878 44 H 0.227 0.773 45 H 0.118 0.882 46 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -27.163 4.231 -2.140 27.574 hybrid contribution 1.514 0.445 -0.514 1.660 sum -25.649 4.676 -2.654 26.206 Atomic orbital electron populations 1.21669 0.89909 1.03613 1.04037 1.22216 1.00031 0.99825 0.93310 0.89555 1.22651 0.83462 1.02555 0.99666 1.57245 1.10731 1.32729 1.22153 1.19630 0.91162 0.95262 0.83515 1.19627 0.93405 1.25757 0.95323 1.17271 0.81858 0.75940 0.86948 1.90735 1.83035 1.52290 1.20419 1.46006 1.07506 1.70097 1.12662 1.19666 0.83339 1.00017 0.89406 1.19211 0.97971 0.93183 1.12206 1.20684 0.95529 0.95116 0.97408 1.21143 0.98559 0.97930 1.08550 1.18006 0.92550 0.92316 0.88867 1.19862 0.97448 1.00939 1.34391 0.90502 1.26767 1.01943 0.93514 0.95758 1.69871 1.32102 1.11803 1.30916 0.85263 0.76572 0.79161 0.78804 1.18432 1.19286 1.18397 1.21263 0.97027 0.96526 1.06283 1.20749 0.94021 0.97714 0.97562 1.24364 0.97282 0.96088 0.91556 1.76949 0.98538 1.24404 1.13471 1.49384 1.10176 1.53927 1.03840 1.22506 0.73289 1.02727 1.01142 0.90148 0.90894 0.91255 0.85859 0.89926 0.78909 0.75932 0.92717 0.92440 0.86761 0.88410 0.90055 0.88118 0.87763 0.77328 0.88233 0.87265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.30 9.19 71.98 0.66 0.36 16 2 C -0.13 -0.98 2.93 -10.53 -0.03 -1.01 16 3 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 4 C 0.04 0.48 5.89 86.34 0.51 0.99 16 5 N -0.59 -11.90 6.19 -342.51 -2.12 -14.02 16 6 C 0.33 8.14 7.07 132.54 0.94 9.08 16 7 C -0.32 -9.25 6.15 -20.06 -0.12 -9.37 16 8 C 0.59 19.77 7.79 86.47 0.67 20.44 16 9 O -0.58 -22.80 16.37 -4.32 -0.07 -22.87 16 10 N -0.71 -22.93 5.54 -470.72 -2.61 -25.54 16 11 C 0.20 7.17 5.79 85.64 0.50 7.66 16 12 C -0.22 -9.21 5.27 -19.67 -0.10 -9.31 16 13 C -0.07 -2.92 9.67 22.22 0.21 -2.70 16 14 C -0.24 -11.65 9.80 22.73 0.22 -11.42 16 15 C 0.09 4.53 5.58 -21.29 -0.12 4.41 16 16 C -0.50 -26.51 9.06 23.46 0.21 -26.29 16 17 H 0.08 3.94 7.91 -2.91 -0.02 3.92 16 18 C 0.04 1.78 5.14 85.26 0.44 2.22 16 19 N -0.82 -42.68 10.95 21.83 0.24 -42.44 16 20 Si 0.98 37.77 29.60 68.60 2.03 39.80 16 21 H -0.26 -9.78 7.11 99.48 0.71 -9.08 16 22 H -0.27 -9.80 7.11 99.48 0.71 -9.09 16 23 H -0.26 -9.69 7.11 99.48 0.71 -8.98 16 24 C -0.19 -9.89 8.70 22.73 0.20 -9.69 16 25 C -0.08 -3.67 9.67 22.22 0.21 -3.46 16 26 C 0.10 2.39 11.50 85.74 0.99 3.38 16 27 N -0.31 -7.95 12.52 -56.04 -0.70 -8.66 16 28 N -0.39 -8.26 4.03 -342.41 -1.38 -9.64 16 29 C 0.12 1.45 6.73 86.49 0.58 2.04 16 30 H 0.08 0.07 8.14 -2.39 -0.02 0.05 16 31 H 0.07 0.09 8.14 -2.39 -0.02 0.07 16 32 H 0.07 0.13 8.14 -2.38 -0.02 0.11 16 33 H 0.12 0.77 8.14 -2.39 -0.02 0.75 16 34 H 0.08 1.01 8.13 -2.39 -0.02 0.99 16 35 H 0.38 6.95 8.83 -89.69 -0.79 6.15 16 36 H 0.41 11.77 7.41 -92.71 -0.69 11.08 16 37 H 0.05 2.02 8.08 -2.39 -0.02 2.00 16 38 H 0.06 2.09 8.08 -2.39 -0.02 2.07 16 39 H 0.11 4.24 8.06 -2.91 -0.02 4.21 16 40 H 0.10 4.47 8.06 -2.91 -0.02 4.45 16 41 H 0.29 13.59 8.30 -92.71 -0.77 12.83 16 42 H 0.10 5.47 6.15 -2.91 -0.02 5.45 16 43 H 0.10 4.27 8.06 -2.91 -0.02 4.25 16 44 H 0.21 4.16 7.50 -2.91 -0.02 4.14 16 45 H 0.10 0.98 8.09 -2.39 -0.02 0.96 16 46 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 Total: -1.00 -68.91 383.94 0.90 -68.00 By element: Atomic # 1 Polarization: 38.50 SS G_CDS: -0.45 Total: 38.04 kcal Atomic # 6 Polarization: -28.65 SS G_CDS: 5.97 Total: -22.68 kcal Atomic # 7 Polarization: -93.73 SS G_CDS: -6.57 Total: -100.30 kcal Atomic # 8 Polarization: -22.80 SS G_CDS: -0.07 Total: -22.87 kcal Atomic # 14 Polarization: 37.77 SS G_CDS: 2.03 Total: 39.80 kcal Total: -68.91 0.90 -68.00 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001548724938.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.491 kcal (2) G-P(sol) polarization free energy of solvation -68.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.004 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds