Wall clock time and date at job start Sat Apr 11 2020 06:05:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 110.91622 * 2 1 4 4 C 1.55120 * 110.93751 * 124.05413 * 2 1 3 5 5 N 1.47430 * 104.94190 * 81.21777 * 4 2 1 6 6 C 1.34769 * 125.64921 * 203.97205 * 5 4 2 7 7 O 1.21546 * 120.00166 * 180.02562 * 6 5 4 8 8 C 1.47920 * 120.00026 * 0.03297 * 6 5 4 9 9 N 1.32371 * 120.63845 * 354.59865 * 8 6 5 10 10 N 1.28086 * 123.18422 * 179.97438 * 9 8 6 11 11 C 1.31796 * 123.49748 * 359.97438 * 10 9 8 12 12 C 1.40402 * 119.13604 * 0.02562 * 11 10 9 13 13 C 1.40235 * 122.73805 * 179.97438 * 12 11 10 14 14 C 1.36254 * 119.37111 * 180.02562 * 13 12 11 15 15 C 1.39376 * 121.07310 * 0.02562 * 14 13 12 16 16 C 1.36358 * 121.09077 * 0.02562 * 15 14 13 17 17 C 1.39842 * 119.42023 * 359.71343 * 16 15 14 18 18 C 1.47025 * 108.70029 * 24.00163 * 5 4 2 19 19 C 1.54316 * 107.27124 * 358.94274 * 18 5 4 20 20 H 1.08998 * 110.72174 * 96.35154 * 19 18 5 21 21 C 1.53003 * 110.72029 * 219.44350 * 19 18 5 22 22 N 1.46506 * 109.46916 * 291.15822 * 21 19 18 23 23 C 1.36936 * 119.99967 * 180.27544 * 22 21 19 24 24 H 1.07999 * 120.00059 * 359.72158 * 23 22 21 25 25 C 1.38811 * 120.00059 * 179.72452 * 23 22 21 26 26 N 1.31625 * 119.99926 * 0.02562 * 25 23 22 27 27 Si 1.86799 * 120.00150 * 179.97438 * 25 23 22 28 28 H 1.48502 * 109.46936 * 60.00257 * 27 25 23 29 29 H 1.48493 * 109.47262 * 180.02562 * 27 25 23 30 30 H 1.48496 * 109.47262 * 300.00208 * 27 25 23 31 31 H 1.08995 * 109.47012 * 183.90384 * 1 2 3 32 32 H 1.09000 * 109.47419 * 303.90402 * 1 2 3 33 33 H 1.08995 * 109.47169 * 63.90102 * 1 2 3 34 34 H 1.08996 * 110.42267 * 322.29299 * 4 2 1 35 35 H 1.09001 * 110.30087 * 200.08375 * 4 2 1 36 36 H 1.07997 * 120.43205 * 180.02562 * 11 10 9 37 37 H 1.08004 * 120.31637 * 0.03657 * 13 12 11 38 38 H 1.08003 * 119.46575 * 179.97438 * 14 13 12 39 39 H 1.08006 * 119.45665 * 180.02562 * 15 14 13 40 40 H 1.07997 * 120.29225 * 179.97438 * 16 15 14 41 41 H 1.09004 * 109.87835 * 239.52428 * 18 5 4 42 42 H 1.09004 * 110.00679 * 118.43649 * 18 5 4 43 43 H 1.08996 * 109.47032 * 171.16294 * 21 19 18 44 44 H 1.08993 * 109.47194 * 51.15537 * 21 19 18 45 45 H 0.97006 * 120.00040 * 0.02562 * 22 21 19 46 46 H 0.96994 * 119.99806 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9191 1.0182 0.0000 4 6 2.0843 -0.8113 1.2003 5 7 2.0170 -2.2199 0.7706 6 6 1.9528 -3.2887 1.5891 7 8 1.9011 -4.4096 1.1221 8 6 1.9449 -3.0975 3.0559 9 7 2.1073 -1.8928 3.5800 10 7 2.1084 -1.6716 4.8416 11 6 1.9479 -2.6167 5.7460 12 6 1.7652 -3.9432 5.3236 13 6 1.5882 -5.0070 6.2199 14 6 1.4171 -6.2685 5.7344 15 6 1.4158 -6.5175 4.3630 16 6 1.5862 -5.5068 3.4637 17 6 1.7592 -4.1983 3.9256 18 6 2.0323 -2.2657 -0.6989 19 6 2.0861 -0.8079 -1.2021 20 1 3.1122 -0.5138 -1.4229 21 6 1.1965 -0.6272 -2.4337 22 7 1.7785 -1.3506 -3.5670 23 6 1.1556 -1.3285 -4.7862 24 1 0.2328 -0.7815 -4.9113 25 6 1.7101 -2.0092 -5.8614 26 7 2.8344 -2.6764 -5.7088 27 14 0.8599 -1.9796 -7.5245 28 1 0.7563 -0.5775 -8.0025 29 1 1.6479 -2.7779 -8.4975 30 1 -0.5007 -2.5604 -7.3953 31 1 -0.3633 -1.0252 0.0700 32 1 -0.3634 0.5732 0.8529 33 1 -0.3633 0.4521 -0.9228 34 1 1.4655 -0.6543 2.0837 35 1 3.1162 -0.5261 1.4053 36 1 1.9568 -2.3741 6.7983 37 1 1.5873 -4.8281 7.2850 38 1 1.2810 -7.0891 6.4234 39 1 1.2775 -7.5277 4.0068 40 1 1.5834 -5.7145 2.4039 41 1 1.1271 -2.7508 -1.0641 42 1 2.9104 -2.8104 -1.0459 43 1 1.1246 0.4327 -2.6776 44 1 0.2017 -1.0202 -2.2242 45 1 2.6072 -1.8423 -3.4546 46 1 3.2220 -3.1517 -6.4602 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001569843625.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:21 Heat of formation + Delta-G solvation = 68.593269 kcal Electronic energy + Delta-G solvation = -29044.214718 eV Core-core repulsion = 25127.995463 eV Total energy + Delta-G solvation = -3916.219255 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.84894 -40.00326 -38.42635 -38.00997 -34.69729 -33.74656 -32.79497 -32.16620 -31.10724 -30.80189 -28.98243 -26.93234 -26.20038 -25.05428 -24.63685 -23.42739 -22.79279 -21.69261 -20.14231 -19.18837 -18.78316 -18.44836 -17.36572 -16.81902 -16.46800 -16.21067 -15.99914 -15.42795 -15.00800 -14.79176 -14.50169 -14.34309 -14.00215 -13.81255 -13.53713 -13.23000 -13.04572 -12.94425 -12.71719 -12.62103 -12.32566 -12.25505 -11.95761 -11.75965 -11.50041 -11.47757 -10.99172 -10.92908 -10.80022 -10.48186 -10.41041 -10.27094 -10.02820 -9.89046 -9.78762 -9.76788 -9.63090 -8.89870 -8.84202 -8.54395 -6.89470 -5.73156 -3.02102 -0.40248 0.21033 1.21994 2.31949 2.73935 2.86193 3.46657 3.50842 3.51999 3.56857 3.61408 3.95379 4.02992 4.18067 4.31551 4.52266 4.60766 4.64481 4.67560 4.81388 4.84609 5.05633 5.09042 5.22096 5.34651 5.39133 5.52917 5.55781 5.61569 5.66142 5.73341 5.79987 5.89936 5.96397 5.99954 6.01036 6.05976 6.10891 6.23468 6.28906 6.33407 6.38652 6.43681 6.50165 6.73163 6.87570 7.45649 7.72273 7.95208 8.37042 8.45437 9.56511 10.13827 10.48214 11.49602 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.018435 B = 0.002503 C = 0.002276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1518.470717 B =11186.067693 C =12301.204068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.101 4.101 3 H 0.093 0.907 4 C 0.105 3.895 5 N -0.586 5.586 6 C 0.583 3.417 7 O -0.528 6.528 8 C 0.078 3.922 9 N -0.226 5.226 10 N -0.268 5.268 11 C 0.100 3.900 12 C -0.086 4.086 13 C -0.098 4.098 14 C -0.095 4.095 15 C -0.102 4.102 16 C -0.089 4.089 17 C -0.047 4.047 18 C 0.116 3.884 19 C -0.101 4.101 20 H 0.087 0.913 21 C 0.164 3.836 22 N -0.734 5.734 23 C -0.240 4.240 24 H 0.070 0.930 25 C -0.013 4.013 26 N -0.933 5.933 27 Si 0.907 3.093 28 H -0.286 1.286 29 H -0.291 1.291 30 H -0.286 1.286 31 H 0.054 0.946 32 H 0.052 0.948 33 H 0.067 0.933 34 H 0.098 0.902 35 H 0.073 0.927 36 H 0.180 0.820 37 H 0.140 0.860 38 H 0.133 0.867 39 H 0.135 0.865 40 H 0.176 0.824 41 H 0.080 0.920 42 H 0.075 0.925 43 H 0.024 0.976 44 H 0.026 0.974 45 H 0.384 0.616 46 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.425 -2.445 28.592 28.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.120 4.120 3 H 0.111 0.889 4 C -0.018 4.018 5 N -0.317 5.317 6 C 0.369 3.631 7 O -0.405 6.405 8 C -0.079 4.079 9 N -0.063 5.063 10 N -0.099 5.099 11 C -0.074 4.074 12 C -0.093 4.093 13 C -0.118 4.118 14 C -0.114 4.114 15 C -0.121 4.121 16 C -0.108 4.108 17 C -0.055 4.055 18 C -0.006 4.006 19 C -0.121 4.121 20 H 0.105 0.895 21 C 0.036 3.964 22 N -0.378 5.378 23 C -0.371 4.371 24 H 0.087 0.913 25 C -0.209 4.209 26 N -0.581 5.581 27 Si 0.738 3.262 28 H -0.213 1.213 29 H -0.217 1.217 30 H -0.213 1.213 31 H 0.073 0.927 32 H 0.071 0.929 33 H 0.086 0.914 34 H 0.116 0.884 35 H 0.091 0.909 36 H 0.197 0.803 37 H 0.158 0.842 38 H 0.151 0.849 39 H 0.153 0.847 40 H 0.193 0.807 41 H 0.098 0.902 42 H 0.093 0.907 43 H 0.042 0.958 44 H 0.043 0.957 45 H 0.217 0.783 46 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -2.305 -1.336 27.895 28.022 hybrid contribution -0.287 -1.701 -0.477 1.790 sum -2.592 -3.037 27.418 27.708 Atomic orbital electron populations 1.21775 0.94270 1.01975 1.01967 1.22446 0.96564 0.99187 0.93847 0.88908 1.22784 1.01982 0.79022 0.97993 1.48398 1.68807 1.06638 1.07815 1.17043 0.78424 0.84059 0.83605 1.90652 1.51631 1.22661 1.75563 1.22970 0.97934 0.91227 0.95801 1.72976 1.08423 1.18915 1.05958 1.72670 1.11156 1.30091 0.96000 1.24801 0.91921 0.88897 1.01828 1.18915 1.01327 0.95775 0.93291 1.20941 0.99698 0.91809 0.99397 1.21187 0.97071 0.97176 0.95960 1.21305 0.97648 1.00253 0.92937 1.22085 0.94601 0.90295 1.03792 1.18606 0.99370 0.95147 0.92383 1.22170 1.03446 0.98171 0.76776 1.22505 1.01332 0.92922 0.95321 0.89499 1.20713 0.94384 0.95594 0.85701 1.42385 1.28668 1.60416 1.06312 1.19162 1.04683 1.26171 0.87088 0.91252 1.24740 0.97577 1.00460 0.98167 1.69649 1.20141 1.37365 1.30987 0.86271 0.78562 0.77339 0.84025 1.21297 1.21721 1.21301 0.92728 0.92924 0.91384 0.88424 0.90863 0.80294 0.84180 0.84887 0.84686 0.80736 0.90195 0.90679 0.95794 0.95650 0.78283 0.93464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.79 8.16 37.16 0.30 -1.48 16 2 C -0.10 -1.28 3.56 -88.36 -0.31 -1.60 16 3 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 4 C 0.10 1.35 5.34 -2.41 -0.01 1.34 16 5 N -0.59 -8.91 3.32 -171.47 -0.57 -9.48 16 6 C 0.58 9.24 7.82 -12.30 -0.10 9.15 16 7 O -0.53 -9.38 13.91 5.33 0.07 -9.30 16 8 C 0.08 1.08 6.84 -82.42 -0.56 0.52 16 9 N -0.23 -3.04 7.87 33.56 0.26 -2.77 16 10 N -0.27 -3.19 11.41 30.90 0.35 -2.84 16 11 C 0.10 0.87 11.20 -16.75 -0.19 0.68 16 12 C -0.09 -0.80 5.75 -106.85 -0.61 -1.41 16 13 C -0.10 -0.62 9.84 -39.55 -0.39 -1.01 16 14 C -0.09 -0.58 9.95 -39.87 -0.40 -0.98 16 15 C -0.10 -0.82 9.95 -39.84 -0.40 -1.21 16 16 C -0.09 -1.00 9.27 -39.66 -0.37 -1.37 16 17 C -0.05 -0.58 5.77 -106.56 -0.61 -1.19 16 18 C 0.12 1.96 5.96 -3.07 -0.02 1.94 16 19 C -0.10 -1.61 2.84 -88.79 -0.25 -1.86 16 20 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 21 C 0.16 3.20 4.43 -4.04 -0.02 3.18 16 22 N -0.73 -18.43 5.48 -59.91 -0.33 -18.76 16 23 C -0.24 -6.73 9.99 -15.06 -0.15 -6.88 16 24 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 25 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 26 N -0.93 -28.48 13.06 55.49 0.72 -27.75 16 27 Si 0.91 22.63 29.55 -169.99 -5.02 17.60 16 28 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 29 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 30 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 31 H 0.05 0.75 7.92 -51.93 -0.41 0.34 16 32 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 33 H 0.07 0.88 6.79 -51.93 -0.35 0.52 16 34 H 0.10 1.25 6.02 -51.93 -0.31 0.94 16 35 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.18 0.77 8.06 -52.49 -0.42 0.35 16 37 H 0.14 0.41 8.06 -52.48 -0.42 -0.01 16 38 H 0.13 0.43 8.06 -52.48 -0.42 0.00 16 39 H 0.14 0.78 8.06 -52.48 -0.42 0.36 16 40 H 0.18 2.29 5.12 -52.49 -0.27 2.02 16 41 H 0.08 1.50 7.73 -51.93 -0.40 1.10 16 42 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 43 H 0.02 0.47 8.12 -51.93 -0.42 0.05 16 44 H 0.03 0.51 6.79 -51.93 -0.35 0.15 16 45 H 0.38 10.16 7.60 -40.82 -0.31 9.85 16 46 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 373.24 15.07 5.62 5.62 Total: -1.00 -33.74 373.24 -9.25 -42.99 By element: Atomic # 1 Polarization: 13.56 SS G_CDS: -6.18 Total: 7.38 kcal Atomic # 6 Polarization: 1.50 SS G_CDS: -4.19 Total: -2.69 kcal Atomic # 7 Polarization: -62.05 SS G_CDS: 0.44 Total: -61.60 kcal Atomic # 8 Polarization: -9.38 SS G_CDS: 0.07 Total: -9.30 kcal Atomic # 14 Polarization: 22.63 SS G_CDS: -5.02 Total: 17.60 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -33.74 -9.25 -42.99 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569843625.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.579 kcal (2) G-P(sol) polarization free energy of solvation -33.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.986 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds