Wall clock time and date at job start Sat Apr 11 2020 06:05:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 110.91622 * 2 1 4 4 C 1.55120 * 110.93751 * 124.05413 * 2 1 3 5 5 N 1.47430 * 104.94190 * 81.21777 * 4 2 1 6 6 C 1.34769 * 125.64921 * 203.97205 * 5 4 2 7 7 O 1.21546 * 120.00166 * 180.02562 * 6 5 4 8 8 C 1.47920 * 120.00026 * 0.03297 * 6 5 4 9 9 N 1.32371 * 120.63845 * 354.59865 * 8 6 5 10 10 N 1.28086 * 123.18422 * 179.97438 * 9 8 6 11 11 C 1.31796 * 123.49748 * 359.97438 * 10 9 8 12 12 C 1.40402 * 119.13604 * 0.02562 * 11 10 9 13 13 C 1.40235 * 122.73805 * 179.97438 * 12 11 10 14 14 C 1.36254 * 119.37111 * 180.02562 * 13 12 11 15 15 C 1.39376 * 121.07310 * 0.02562 * 14 13 12 16 16 C 1.36358 * 121.09077 * 0.02562 * 15 14 13 17 17 C 1.39842 * 119.42023 * 359.71343 * 16 15 14 18 18 C 1.47025 * 108.70029 * 24.00163 * 5 4 2 19 19 C 1.54316 * 107.27124 * 358.94274 * 18 5 4 20 20 H 1.08998 * 110.72174 * 96.35154 * 19 18 5 21 21 C 1.53003 * 110.72029 * 219.44350 * 19 18 5 22 22 N 1.46506 * 109.46916 * 291.15822 * 21 19 18 23 23 C 1.36936 * 119.99967 * 180.27544 * 22 21 19 24 24 H 1.07999 * 120.00059 * 359.72158 * 23 22 21 25 25 C 1.38811 * 120.00059 * 179.72452 * 23 22 21 26 26 N 1.31625 * 119.99926 * 0.02562 * 25 23 22 27 27 Si 1.86799 * 120.00150 * 179.97438 * 25 23 22 28 28 H 1.48502 * 109.46936 * 60.00257 * 27 25 23 29 29 H 1.48493 * 109.47262 * 180.02562 * 27 25 23 30 30 H 1.48496 * 109.47262 * 300.00208 * 27 25 23 31 31 H 1.08995 * 109.47012 * 183.90384 * 1 2 3 32 32 H 1.09000 * 109.47419 * 303.90402 * 1 2 3 33 33 H 1.08995 * 109.47169 * 63.90102 * 1 2 3 34 34 H 1.08996 * 110.42267 * 322.29299 * 4 2 1 35 35 H 1.09001 * 110.30087 * 200.08375 * 4 2 1 36 36 H 1.07997 * 120.43205 * 180.02562 * 11 10 9 37 37 H 1.08004 * 120.31637 * 0.03657 * 13 12 11 38 38 H 1.08003 * 119.46575 * 179.97438 * 14 13 12 39 39 H 1.08006 * 119.45665 * 180.02562 * 15 14 13 40 40 H 1.07997 * 120.29225 * 179.97438 * 16 15 14 41 41 H 1.09004 * 109.87835 * 239.52428 * 18 5 4 42 42 H 1.09004 * 110.00679 * 118.43649 * 18 5 4 43 43 H 1.08996 * 109.47032 * 171.16294 * 21 19 18 44 44 H 1.08993 * 109.47194 * 51.15537 * 21 19 18 45 45 H 0.97006 * 120.00040 * 0.02562 * 22 21 19 46 46 H 0.96994 * 119.99806 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9191 1.0182 0.0000 4 6 2.0843 -0.8113 1.2003 5 7 2.0170 -2.2199 0.7706 6 6 1.9528 -3.2887 1.5891 7 8 1.9011 -4.4096 1.1221 8 6 1.9449 -3.0975 3.0559 9 7 2.1073 -1.8928 3.5800 10 7 2.1084 -1.6716 4.8416 11 6 1.9479 -2.6167 5.7460 12 6 1.7652 -3.9432 5.3236 13 6 1.5882 -5.0070 6.2199 14 6 1.4171 -6.2685 5.7344 15 6 1.4158 -6.5175 4.3630 16 6 1.5862 -5.5068 3.4637 17 6 1.7592 -4.1983 3.9256 18 6 2.0323 -2.2657 -0.6989 19 6 2.0861 -0.8079 -1.2021 20 1 3.1122 -0.5138 -1.4229 21 6 1.1965 -0.6272 -2.4337 22 7 1.7785 -1.3506 -3.5670 23 6 1.1556 -1.3285 -4.7862 24 1 0.2328 -0.7815 -4.9113 25 6 1.7101 -2.0092 -5.8614 26 7 2.8344 -2.6764 -5.7088 27 14 0.8599 -1.9796 -7.5245 28 1 0.7563 -0.5775 -8.0025 29 1 1.6479 -2.7779 -8.4975 30 1 -0.5007 -2.5604 -7.3953 31 1 -0.3633 -1.0252 0.0700 32 1 -0.3634 0.5732 0.8529 33 1 -0.3633 0.4521 -0.9228 34 1 1.4655 -0.6543 2.0837 35 1 3.1162 -0.5261 1.4053 36 1 1.9568 -2.3741 6.7983 37 1 1.5873 -4.8281 7.2850 38 1 1.2810 -7.0891 6.4234 39 1 1.2775 -7.5277 4.0068 40 1 1.5834 -5.7145 2.4039 41 1 1.1271 -2.7508 -1.0641 42 1 2.9104 -2.8104 -1.0459 43 1 1.1246 0.4327 -2.6776 44 1 0.2017 -1.0202 -2.2242 45 1 2.6072 -1.8423 -3.4546 46 1 3.2220 -3.1517 -6.4602 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001569843625.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:20 Heat of formation + Delta-G solvation = 46.595235 kcal Electronic energy + Delta-G solvation = -29045.168625 eV Core-core repulsion = 25127.995463 eV Total energy + Delta-G solvation = -3917.173161 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.67576 -41.17014 -39.38083 -39.01697 -36.48702 -34.70511 -34.14910 -32.87245 -32.84428 -31.57642 -30.48773 -28.11043 -27.39241 -26.39978 -25.36898 -24.92802 -23.80168 -23.05678 -21.19956 -20.55328 -19.71727 -19.21241 -18.98783 -18.05298 -17.55737 -17.16385 -17.04503 -16.75429 -16.36556 -15.65917 -15.63183 -15.36358 -15.28565 -15.15390 -14.75648 -14.67404 -14.35031 -14.01105 -13.79513 -13.67951 -13.48139 -13.32338 -13.10547 -12.99683 -12.80739 -12.71032 -12.54125 -12.43474 -12.20458 -11.90299 -11.76856 -11.67983 -11.53016 -11.42394 -10.93391 -10.86497 -10.79278 -10.44208 -9.86150 -9.54576 -8.99324 -7.94377 -5.23390 -1.17736 -0.50375 0.49582 1.41291 1.46489 1.50053 1.56021 1.60230 1.98588 2.55953 2.65471 2.83695 3.18615 3.30235 3.37980 3.43252 3.52600 3.58849 3.65908 3.77448 3.86489 4.13814 4.16978 4.21390 4.22700 4.33333 4.41375 4.50435 4.53761 4.59424 4.70942 4.77355 4.77957 4.83695 4.93154 4.94759 5.01179 5.10929 5.17325 5.18663 5.21114 5.28145 5.29636 5.39668 5.47367 5.49979 5.72533 6.25974 6.27488 6.75732 7.33582 7.53457 8.09460 8.32048 9.29154 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.018435 B = 0.002503 C = 0.002276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1518.470717 B =11186.067693 C =12301.204068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.088 4.088 3 H 0.122 0.878 4 C 0.111 3.889 5 N -0.588 5.588 6 C 0.577 3.423 7 O -0.561 6.561 8 C 0.049 3.951 9 N -0.233 5.233 10 N -0.301 5.301 11 C 0.124 3.876 12 C -0.100 4.100 13 C -0.077 4.077 14 C -0.094 4.094 15 C -0.087 4.087 16 C -0.131 4.131 17 C -0.068 4.068 18 C 0.124 3.876 19 C -0.092 4.092 20 H 0.088 0.912 21 C 0.166 3.834 22 N -0.747 5.747 23 C -0.244 4.244 24 H 0.077 0.923 25 C -0.078 4.078 26 N -0.971 5.971 27 Si 0.974 3.026 28 H -0.275 1.275 29 H -0.296 1.296 30 H -0.279 1.279 31 H 0.033 0.967 32 H 0.076 0.924 33 H 0.065 0.935 34 H 0.104 0.896 35 H 0.081 0.919 36 H 0.231 0.769 37 H 0.189 0.811 38 H 0.175 0.825 39 H 0.154 0.846 40 H 0.143 0.857 41 H 0.052 0.948 42 H 0.052 0.948 43 H 0.035 0.965 44 H 0.024 0.976 45 H 0.372 0.628 46 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.382 -1.800 32.591 32.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.108 4.108 3 H 0.140 0.860 4 C -0.011 4.011 5 N -0.319 5.319 6 C 0.364 3.636 7 O -0.440 6.440 8 C -0.108 4.108 9 N -0.069 5.069 10 N -0.133 5.133 11 C -0.049 4.049 12 C -0.107 4.107 13 C -0.096 4.096 14 C -0.113 4.113 15 C -0.106 4.106 16 C -0.150 4.150 17 C -0.075 4.075 18 C 0.002 3.998 19 C -0.111 4.111 20 H 0.106 0.894 21 C 0.040 3.960 22 N -0.390 5.390 23 C -0.376 4.376 24 H 0.095 0.905 25 C -0.270 4.270 26 N -0.622 5.622 27 Si 0.803 3.197 28 H -0.201 1.201 29 H -0.223 1.223 30 H -0.206 1.206 31 H 0.052 0.948 32 H 0.095 0.905 33 H 0.084 0.916 34 H 0.122 0.878 35 H 0.099 0.901 36 H 0.247 0.753 37 H 0.206 0.794 38 H 0.192 0.808 39 H 0.171 0.829 40 H 0.161 0.839 41 H 0.071 0.929 42 H 0.070 0.930 43 H 0.053 0.947 44 H 0.042 0.958 45 H 0.204 0.796 46 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -3.293 -0.641 31.934 32.110 hybrid contribution -0.036 -2.011 -1.483 2.499 sum -3.329 -2.653 30.451 30.747 Atomic orbital electron populations 1.21753 0.93941 1.01088 1.02912 1.22490 0.96736 0.99985 0.91543 0.85978 1.22869 1.02619 0.77476 0.98121 1.48458 1.68870 1.07762 1.06803 1.17555 0.77535 0.83606 0.84949 1.90636 1.52928 1.23888 1.76588 1.22619 1.01203 0.92598 0.94369 1.72844 1.08133 1.18682 1.07282 1.72607 1.13627 1.31336 0.95689 1.25573 0.88029 0.87938 1.03363 1.19246 1.01967 0.97257 0.92254 1.21522 0.96388 0.90590 1.01114 1.21654 0.95745 0.98624 0.95236 1.21646 0.94917 1.00158 0.93880 1.21864 0.98567 0.91491 1.03095 1.18797 1.00051 0.94753 0.93908 1.21877 1.00958 0.98600 0.78405 1.22360 1.00883 0.92756 0.95130 0.89400 1.20832 0.94628 0.95158 0.85382 1.42618 1.28343 1.60863 1.07145 1.19605 1.04683 1.25147 0.88155 0.90476 1.25595 0.98549 1.00873 1.01968 1.69822 1.21880 1.38793 1.31682 0.85200 0.77451 0.77622 0.79431 1.20063 1.22269 1.20559 0.94786 0.90482 0.91638 0.87783 0.90077 0.75283 0.79410 0.80757 0.82861 0.83947 0.92939 0.92998 0.94701 0.95810 0.79590 0.94067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.41 8.16 71.98 0.59 -2.82 16 2 C -0.09 -2.18 3.56 -9.33 -0.03 -2.21 16 3 H 0.12 2.39 8.14 -2.39 -0.02 2.37 16 4 C 0.11 2.88 5.34 86.93 0.46 3.34 16 5 N -0.59 -19.29 3.32 -814.68 -2.70 -21.99 16 6 C 0.58 20.08 7.82 86.81 0.68 20.76 16 7 O -0.56 -22.45 13.91 -3.86 -0.05 -22.50 16 8 C 0.05 1.45 6.84 42.44 0.29 1.74 16 9 N -0.23 -6.30 7.87 -47.73 -0.38 -6.67 16 10 N -0.30 -6.73 11.41 -56.16 -0.64 -7.37 16 11 C 0.12 1.75 11.20 85.23 0.95 2.70 16 12 C -0.10 -1.61 5.75 -21.31 -0.12 -1.73 16 13 C -0.08 -0.59 9.84 22.29 0.22 -0.37 16 14 C -0.09 -0.75 9.95 22.08 0.22 -0.53 16 15 C -0.09 -1.27 9.95 22.11 0.22 -1.05 16 16 C -0.13 -3.13 9.27 22.22 0.21 -2.92 16 17 C -0.07 -1.68 5.77 -21.12 -0.12 -1.80 16 18 C 0.12 4.58 5.96 86.73 0.52 5.09 16 19 C -0.09 -3.01 2.84 -9.61 -0.03 -3.04 16 20 H 0.09 2.89 8.14 -2.39 -0.02 2.87 16 21 C 0.17 6.63 4.43 86.38 0.38 7.01 16 22 N -0.75 -38.84 5.48 -343.45 -1.88 -40.72 16 23 C -0.24 -13.93 9.99 84.03 0.84 -13.09 16 24 H 0.08 4.19 7.83 -2.91 -0.02 4.17 16 25 C -0.08 -4.59 5.50 84.86 0.47 -4.12 16 26 N -0.97 -61.27 13.06 21.65 0.28 -60.99 16 27 Si 0.97 47.28 29.55 68.60 2.03 49.30 16 28 H -0.27 -12.70 7.11 99.48 0.71 -11.99 16 29 H -0.30 -14.51 7.11 99.48 0.71 -13.80 16 30 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 31 H 0.03 0.96 7.92 -2.39 -0.02 0.94 16 32 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 33 H 0.06 1.63 6.79 -2.39 -0.02 1.61 16 34 H 0.10 2.64 6.02 -2.39 -0.01 2.63 16 35 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 36 H 0.23 0.64 8.06 -2.91 -0.02 0.62 16 37 H 0.19 -0.31 8.06 -2.91 -0.02 -0.33 16 38 H 0.18 0.03 8.06 -2.91 -0.02 0.01 16 39 H 0.15 1.55 8.06 -2.91 -0.02 1.53 16 40 H 0.14 4.30 5.12 -2.91 -0.01 4.28 16 41 H 0.05 2.19 7.73 -2.39 -0.02 2.17 16 42 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 43 H 0.04 1.35 8.12 -2.39 -0.02 1.33 16 44 H 0.02 0.97 6.79 -2.39 -0.02 0.96 16 45 H 0.37 20.77 7.60 -92.70 -0.70 20.06 16 46 H 0.25 15.36 8.31 -92.71 -0.77 14.59 16 Total: -1.00 -79.52 373.24 2.71 -76.81 By element: Atomic # 1 Polarization: 26.86 SS G_CDS: 0.31 Total: 27.17 kcal Atomic # 6 Polarization: 1.21 SS G_CDS: 5.74 Total: 6.95 kcal Atomic # 7 Polarization: -132.42 SS G_CDS: -5.32 Total: -137.73 kcal Atomic # 8 Polarization: -22.45 SS G_CDS: -0.05 Total: -22.50 kcal Atomic # 14 Polarization: 47.28 SS G_CDS: 2.03 Total: 49.30 kcal Total: -79.52 2.71 -76.81 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569843625.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.405 kcal (2) G-P(sol) polarization free energy of solvation -79.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.810 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds