Wall clock time and date at job start Sat Apr 11 2020 06:05:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08992 * 110.80371 * 2 1 4 4 C 1.54944 * 110.73771 * 236.70692 * 2 1 3 5 5 N 1.48116 * 103.25988 * 279.04367 * 4 2 1 6 6 C 1.34774 * 127.03456 * 140.74407 * 5 4 2 7 7 O 1.21536 * 120.00038 * 354.62016 * 6 5 4 8 8 C 1.47912 * 119.99764 * 174.62492 * 6 5 4 9 9 N 1.32378 * 120.63782 * 5.44111 * 8 6 5 10 10 N 1.28090 * 123.18288 * 179.97438 * 9 8 6 11 11 C 1.31799 * 123.49885 * 359.97438 * 10 9 8 12 12 C 1.40407 * 119.13400 * 0.02562 * 11 10 9 13 13 C 1.40232 * 122.73277 * 179.97438 * 12 11 10 14 14 C 1.36261 * 119.36601 * 180.02562 * 13 12 11 15 15 C 1.39377 * 121.07285 * 0.02562 * 14 13 12 16 16 C 1.36365 * 121.09319 * 359.97438 * 15 14 13 17 17 C 1.39840 * 119.41376 * 359.74597 * 16 15 14 18 18 C 1.47489 * 105.92857 * 320.70797 * 5 4 2 19 19 C 1.54003 * 107.08577 * 25.44756 * 18 5 4 20 20 H 1.09005 * 110.32617 * 239.70107 * 19 18 5 21 21 C 1.52998 * 110.32897 * 117.58875 * 19 18 5 22 22 N 1.46498 * 109.47129 * 66.44871 * 21 19 18 23 23 C 1.36932 * 119.99871 * 180.27381 * 22 21 19 24 24 H 1.07999 * 120.00399 * 359.73295 * 23 22 21 25 25 C 1.38816 * 119.99921 * 179.72600 * 23 22 21 26 26 N 1.31611 * 120.00096 * 0.02562 * 25 23 22 27 27 Si 1.86808 * 119.99812 * 180.02562 * 25 23 22 28 28 H 1.48500 * 109.47012 * 0.02562 * 27 25 23 29 29 H 1.48496 * 109.47079 * 120.00330 * 27 25 23 30 30 H 1.48504 * 109.46671 * 240.00291 * 27 25 23 31 31 H 1.09000 * 109.46852 * 296.70703 * 1 2 3 32 32 H 1.08997 * 109.47148 * 56.70553 * 1 2 3 33 33 H 1.09004 * 109.47334 * 176.70998 * 1 2 3 34 34 H 1.08996 * 110.66240 * 160.59603 * 4 2 1 35 35 H 1.09007 * 110.79930 * 37.55123 * 4 2 1 36 36 H 1.07992 * 120.43595 * 179.97438 * 11 10 9 37 37 H 1.07993 * 120.31914 * 0.05094 * 13 12 11 38 38 H 1.08000 * 119.46473 * 180.02562 * 14 13 12 39 39 H 1.08003 * 119.45219 * 179.97438 * 15 14 13 40 40 H 1.08001 * 120.29386 * 179.97438 * 16 15 14 41 41 H 1.09005 * 109.90856 * 266.08540 * 18 5 4 42 42 H 1.08993 * 110.07308 * 144.89909 * 18 5 4 43 43 H 1.09006 * 109.46709 * 306.45280 * 21 19 18 44 44 H 1.08997 * 109.47491 * 186.45669 * 21 19 18 45 45 H 0.96998 * 119.99859 * 0.02562 * 22 21 19 46 46 H 0.96999 * 120.00015 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9171 1.0189 0.0000 4 6 2.0787 -0.7954 -1.2112 5 7 1.9870 -2.2039 -0.7623 6 6 1.6232 -3.2698 -1.5026 7 8 1.2328 -3.1130 -2.6428 8 6 1.6991 -4.6303 -0.9273 9 7 2.0192 -4.8080 0.3448 10 7 2.0986 -5.9629 0.8931 11 6 1.8702 -7.0906 0.2502 12 6 1.5204 -7.0439 -1.1088 13 6 1.2617 -8.1961 -1.8652 14 6 0.9281 -8.0710 -3.1804 15 6 0.8406 -6.8180 -3.7844 16 6 1.0856 -5.6773 -3.0784 17 6 1.4250 -5.7669 -1.7248 18 6 2.3762 -2.2015 0.6603 19 6 2.0775 -0.7938 1.2087 20 1 2.9907 -0.3322 1.5845 21 6 1.0253 -0.8673 2.3170 22 7 1.5802 -1.5795 3.4707 23 6 0.8138 -1.7739 4.5886 24 1 -0.1982 -1.3984 4.6216 25 6 1.3377 -2.4538 5.6797 26 7 2.5712 -2.9111 5.6397 27 14 0.2919 -2.7195 7.2046 28 1 -1.0480 -2.1137 6.9976 29 1 0.1430 -4.1756 7.4551 30 1 0.9494 -2.0809 8.3730 31 1 -0.3633 0.4619 0.9180 32 1 -0.3633 0.5641 -0.8590 33 1 -0.3634 -1.0260 -0.0590 34 1 3.1144 -0.5227 -1.4132 35 1 1.4602 -0.6320 -2.0938 36 1 1.9518 -8.0381 0.7618 37 1 1.3259 -9.1731 -1.4096 38 1 0.7281 -8.9573 -3.7643 39 1 0.5744 -6.7493 -4.8288 40 1 1.0146 -4.7130 -3.5595 41 1 3.4402 -2.4186 0.7544 42 1 1.7961 -2.9441 1.2080 43 1 0.1474 -1.3989 1.9497 44 1 0.7407 0.1417 2.6153 45 1 2.4893 -1.9166 3.4412 46 1 2.9371 -3.3865 6.4019 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001569843627.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:25 Heat of formation + Delta-G solvation = 73.555122 kcal Electronic energy + Delta-G solvation = -29706.886929 eV Core-core repulsion = 25790.882836 eV Total energy + Delta-G solvation = -3916.004093 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.63548 -39.94884 -38.24493 -37.96349 -34.52822 -33.62674 -32.75072 -31.96256 -31.16283 -30.49397 -28.85868 -27.29094 -25.48298 -25.09815 -24.43462 -23.32355 -22.83630 -21.66917 -20.02573 -19.08659 -18.62732 -18.23839 -17.11715 -16.87503 -16.46227 -16.16065 -15.78952 -15.24756 -14.87161 -14.74327 -14.33385 -14.10653 -14.02627 -13.66782 -13.54297 -13.23630 -12.92463 -12.76940 -12.68484 -12.55203 -12.10213 -12.06275 -11.86658 -11.73531 -11.58194 -11.16408 -10.91619 -10.78647 -10.73294 -10.47847 -10.37127 -10.16191 -9.84341 -9.71204 -9.63753 -9.59605 -9.56130 -8.78121 -8.74256 -8.52752 -6.80445 -5.65491 -2.93610 -0.19140 0.42866 1.37422 2.50272 2.79632 2.96489 3.49646 3.55023 3.57223 3.78068 3.83007 4.18021 4.21422 4.35344 4.47408 4.62065 4.69013 4.76256 4.80467 4.91291 4.98203 5.05275 5.25345 5.38234 5.41694 5.53351 5.55119 5.64857 5.67466 5.69475 5.70877 5.86982 5.93375 5.98425 6.06298 6.10203 6.14520 6.16975 6.25328 6.30348 6.45461 6.46581 6.51207 6.70328 6.82163 6.96801 7.51305 7.79848 7.97506 8.52748 8.69485 9.64249 10.22394 10.57169 11.57169 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.010349 B = 0.003813 C = 0.002951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2705.007524 B = 7341.074768 C = 9485.678700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.098 4.098 3 H 0.089 0.911 4 C 0.107 3.893 5 N -0.590 5.590 6 C 0.597 3.403 7 O -0.541 6.541 8 C 0.062 3.938 9 N -0.205 5.205 10 N -0.250 5.250 11 C 0.100 3.900 12 C -0.087 4.087 13 C -0.094 4.094 14 C -0.100 4.100 15 C -0.105 4.105 16 C -0.092 4.092 17 C -0.046 4.046 18 C 0.102 3.898 19 C -0.106 4.106 20 H 0.086 0.914 21 C 0.163 3.837 22 N -0.731 5.731 23 C -0.237 4.237 24 H 0.068 0.932 25 C -0.011 4.011 26 N -0.928 5.928 27 Si 0.902 3.098 28 H -0.282 1.282 29 H -0.292 1.292 30 H -0.292 1.292 31 H 0.067 0.933 32 H 0.049 0.951 33 H 0.055 0.945 34 H 0.075 0.925 35 H 0.085 0.915 36 H 0.181 0.819 37 H 0.140 0.860 38 H 0.131 0.869 39 H 0.132 0.868 40 H 0.173 0.827 41 H 0.068 0.932 42 H 0.117 0.883 43 H 0.022 0.978 44 H 0.021 0.979 45 H 0.385 0.615 46 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.954 -6.412 -21.142 22.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.118 4.118 3 H 0.107 0.893 4 C -0.015 4.015 5 N -0.321 5.321 6 C 0.383 3.617 7 O -0.419 6.419 8 C -0.095 4.095 9 N -0.041 5.041 10 N -0.082 5.082 11 C -0.074 4.074 12 C -0.094 4.094 13 C -0.114 4.114 14 C -0.120 4.120 15 C -0.124 4.124 16 C -0.111 4.111 17 C -0.053 4.053 18 C -0.020 4.020 19 C -0.126 4.126 20 H 0.104 0.896 21 C 0.036 3.964 22 N -0.375 5.375 23 C -0.369 4.369 24 H 0.086 0.914 25 C -0.207 4.207 26 N -0.577 5.577 27 Si 0.734 3.266 28 H -0.207 1.207 29 H -0.220 1.220 30 H -0.220 1.220 31 H 0.086 0.914 32 H 0.068 0.932 33 H 0.074 0.926 34 H 0.094 0.906 35 H 0.104 0.896 36 H 0.198 0.802 37 H 0.158 0.842 38 H 0.149 0.851 39 H 0.150 0.850 40 H 0.190 0.810 41 H 0.086 0.914 42 H 0.135 0.865 43 H 0.040 0.960 44 H 0.039 0.961 45 H 0.218 0.782 46 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -0.875 -5.603 -20.117 20.901 hybrid contribution -0.551 -1.210 -0.253 1.354 sum -1.426 -6.813 -20.371 21.527 Atomic orbital electron populations 1.21802 0.94268 1.02102 1.01767 1.22261 0.96725 0.98928 0.93888 0.89269 1.22655 1.01220 0.79507 0.98154 1.48652 1.63589 1.06882 1.12987 1.16979 0.77944 0.82212 0.84517 1.90585 1.48597 1.84770 1.17936 1.22929 0.99119 0.94562 0.92936 1.73154 1.06897 1.16164 1.07911 1.72895 1.11133 0.94048 1.30097 1.24944 0.91544 1.00038 0.90921 1.18948 1.01077 0.93939 0.95465 1.20955 0.98949 0.97258 0.94268 1.21132 0.97711 0.98117 0.94997 1.21236 0.98341 0.92156 1.00700 1.21991 0.95121 1.01742 0.92209 1.18584 0.99101 0.91982 0.95663 1.22662 1.01319 0.99217 0.78849 1.22399 1.00544 0.94251 0.95383 0.89601 1.20766 0.93596 0.95340 0.86702 1.42379 1.15475 1.67043 1.12636 1.19211 0.95876 1.29512 0.92254 0.91388 1.24696 0.96489 1.01205 0.98344 1.69665 1.14158 1.43022 1.30827 0.86187 0.79383 0.77442 0.83607 1.20695 1.21953 1.21978 0.91417 0.93153 0.92574 0.90637 0.89630 0.80217 0.84201 0.85065 0.84992 0.81046 0.91406 0.86482 0.96018 0.96135 0.78167 0.93673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.87 7.99 37.16 0.30 -1.57 16 2 C -0.10 -1.25 3.60 -88.74 -0.32 -1.57 16 3 H 0.09 0.96 8.14 -51.93 -0.42 0.53 16 4 C 0.11 1.34 6.55 -2.13 -0.01 1.33 16 5 N -0.59 -9.10 3.19 -170.85 -0.54 -9.64 16 6 C 0.60 9.72 7.85 -12.30 -0.10 9.63 16 7 O -0.54 -8.91 13.78 5.33 0.07 -8.84 16 8 C 0.06 1.01 6.87 -82.42 -0.57 0.45 16 9 N -0.20 -3.73 7.99 33.56 0.27 -3.46 16 10 N -0.25 -4.37 11.41 30.90 0.35 -4.02 16 11 C 0.10 1.28 11.20 -16.75 -0.19 1.09 16 12 C -0.09 -1.04 5.75 -106.85 -0.61 -1.66 16 13 C -0.09 -0.80 9.84 -39.54 -0.39 -1.19 16 14 C -0.10 -0.76 9.95 -39.87 -0.40 -1.15 16 15 C -0.10 -0.93 9.95 -39.83 -0.40 -1.32 16 16 C -0.09 -1.10 9.27 -39.66 -0.37 -1.47 16 17 C -0.05 -0.64 5.77 -106.57 -0.61 -1.26 16 18 C 0.10 1.73 5.35 -2.98 -0.02 1.71 16 19 C -0.11 -1.71 3.00 -89.25 -0.27 -1.98 16 20 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 21 C 0.16 3.30 4.17 -4.04 -0.02 3.28 16 22 N -0.73 -18.67 5.33 -59.91 -0.32 -18.99 16 23 C -0.24 -6.76 9.99 -15.06 -0.15 -6.91 16 24 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 25 C -0.01 -0.33 5.50 -17.43 -0.10 -0.42 16 26 N -0.93 -28.51 13.06 55.49 0.72 -27.78 16 27 Si 0.90 22.90 29.55 -169.99 -5.02 17.88 16 28 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 29 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 30 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 31 H 0.07 0.92 6.67 -51.93 -0.35 0.57 16 32 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.06 0.85 7.61 -51.93 -0.40 0.45 16 34 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 35 H 0.09 1.04 7.73 -51.93 -0.40 0.64 16 36 H 0.18 1.55 8.06 -52.49 -0.42 1.13 16 37 H 0.14 0.74 8.06 -52.49 -0.42 0.32 16 38 H 0.13 0.59 8.06 -52.49 -0.42 0.17 16 39 H 0.13 0.81 8.06 -52.48 -0.42 0.39 16 40 H 0.17 2.22 5.12 -52.49 -0.27 1.95 16 41 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 42 H 0.12 2.38 5.54 -51.93 -0.29 2.09 16 43 H 0.02 0.46 6.85 -51.93 -0.36 0.11 16 44 H 0.02 0.42 7.55 -51.93 -0.39 0.03 16 45 H 0.38 10.33 7.51 -40.82 -0.31 10.03 16 46 H 0.25 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 371.88 15.07 5.60 5.60 Total: -1.00 -34.45 371.88 -9.18 -43.63 By element: Atomic # 1 Polarization: 14.76 SS G_CDS: -6.10 Total: 8.66 kcal Atomic # 6 Polarization: 1.18 SS G_CDS: -4.21 Total: -3.03 kcal Atomic # 7 Polarization: -64.38 SS G_CDS: 0.48 Total: -63.90 kcal Atomic # 8 Polarization: -8.91 SS G_CDS: 0.07 Total: -8.84 kcal Atomic # 14 Polarization: 22.90 SS G_CDS: -5.02 Total: 17.88 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -34.45 -9.18 -43.63 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569843627.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.187 kcal (2) G-P(sol) polarization free energy of solvation -34.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.632 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds