Wall clock time and date at job start Sat Apr 11 2020 06:05:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08995 * 109.42701 * 2 1 4 4 C 1.53296 * 109.41824 * 119.81270 * 2 1 3 5 5 N 1.47071 * 108.32556 * 170.52540 * 4 2 1 6 6 N 1.28143 * 127.26894 * 163.35171 * 5 4 2 7 7 C 1.31962 * 110.16397 * 180.36448 * 6 5 4 8 8 C 1.47713 * 126.48290 * 179.78443 * 7 6 5 9 9 O 1.21568 * 119.99530 * 179.68504 * 8 7 6 10 10 N 1.34778 * 120.00024 * 359.68995 * 8 7 6 11 11 C 1.46503 * 119.99597 * 180.27495 * 10 8 7 12 12 C 1.50697 * 109.46833 * 179.72237 * 11 10 8 13 13 C 1.38632 * 119.75367 * 269.72745 * 12 11 10 14 14 C 1.37619 * 120.25033 * 179.72470 * 13 12 11 15 15 C 1.40710 * 119.74498 * 0.52578 * 14 13 12 16 16 C 1.41394 * 120.24548 * 179.72800 * 15 14 13 17 17 H 1.08007 * 119.99746 * 24.41014 * 16 15 14 18 18 C 1.39940 * 120.00217 * 204.41021 * 16 15 14 19 19 N 1.30818 * 120.00050 * 17.85087 * 18 16 15 20 20 Si 1.86800 * 119.99981 * 197.85508 * 18 16 15 21 21 H 1.48498 * 109.47391 * 60.00151 * 20 18 16 22 22 H 1.48499 * 109.47098 * 179.97438 * 20 18 16 23 23 H 1.48502 * 109.47308 * 299.99742 * 20 18 16 24 24 C 1.40719 * 119.51148 * 359.74325 * 15 14 13 25 25 C 1.37615 * 119.74336 * 0.02562 * 24 15 14 26 26 C 1.41709 * 107.02723 * 359.52453 * 7 6 5 27 27 C 1.34502 * 105.32822 * 0.22064 * 26 7 6 28 28 C 1.50755 * 128.27408 * 180.13310 * 27 26 7 29 29 N 1.46977 * 109.42454 * 240.11635 * 2 1 3 30 30 H 1.08998 * 109.47135 * 179.88008 * 1 2 3 31 31 H 1.08999 * 109.47309 * 299.87738 * 1 2 3 32 32 H 1.09001 * 109.46905 * 59.87886 * 1 2 3 33 33 H 1.09000 * 109.69185 * 290.22756 * 4 2 1 34 34 H 1.08997 * 109.69505 * 50.77210 * 4 2 1 35 35 H 0.96997 * 119.99841 * 359.97438 * 10 8 7 36 36 H 1.09000 * 109.46905 * 299.72001 * 11 10 8 37 37 H 1.08997 * 109.47141 * 59.71939 * 11 10 8 38 38 H 1.08002 * 119.87152 * 359.97438 * 13 12 11 39 39 H 1.08001 * 120.12498 * 180.27249 * 14 13 12 40 40 H 0.96999 * 120.00362 * 180.02562 * 19 18 16 41 41 H 1.08003 * 120.12577 * 179.97438 * 24 15 14 42 42 H 1.08005 * 119.87422 * 179.97438 * 25 24 15 43 43 H 1.07991 * 127.33419 * 180.18804 * 26 7 6 44 44 H 1.09004 * 109.73811 * 284.25888 * 28 27 26 45 45 H 1.09002 * 109.73791 * 44.95673 * 28 27 26 46 46 H 1.00907 * 110.99469 * 45.07149 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8925 1.0279 0.0000 4 6 2.0396 -0.7188 1.2544 5 7 3.4921 -0.9074 1.1213 6 7 4.3264 -1.1900 2.0520 7 6 5.5472 -1.2744 1.5582 8 6 6.7807 -1.5773 2.3125 9 8 7.8487 -1.6316 1.7343 10 7 6.7219 -1.7936 3.6415 11 6 7.9461 -2.0881 4.3904 12 6 7.6099 -2.2807 5.8467 13 6 7.6265 -1.1931 6.7063 14 6 7.3156 -1.3564 8.0370 15 6 6.9909 -2.6351 8.5263 16 6 6.6754 -2.8158 9.8926 17 1 6.2986 -1.9872 10.4740 18 6 6.8514 -4.0682 10.4917 19 7 7.6146 -4.9646 9.9214 20 14 5.9963 -4.4600 12.1056 21 1 4.5262 -4.3517 11.9260 22 1 6.3425 -5.8413 12.5266 23 1 6.4400 -3.4988 13.1470 24 6 6.9827 -3.7327 7.6457 25 6 7.2922 -3.5452 6.3180 26 6 5.4502 -1.0253 0.1666 27 6 4.1442 -0.8014 -0.0643 28 6 3.4680 -0.4870 -1.3745 29 7 2.0188 -0.6906 -1.2018 30 1 -0.3633 -1.0276 -0.0022 31 1 -0.3634 0.5119 0.8911 32 1 -0.3633 0.5157 -0.8889 33 1 1.8271 -0.1141 2.1361 34 1 1.5497 -1.6880 1.3470 35 1 5.8698 -1.7499 4.1027 36 1 8.4013 -2.9979 3.9992 37 1 8.6448 -1.2581 4.2855 38 1 7.8804 -0.2134 6.3294 39 1 7.3249 -0.5070 8.7039 40 1 7.7363 -5.8329 10.3364 41 1 6.7352 -4.7186 8.0108 42 1 7.2869 -4.3862 5.6404 43 1 6.2537 -1.0166 -0.5548 44 1 3.6639 0.5491 -1.6505 45 1 3.8434 -1.1529 -2.1516 46 1 1.5115 -0.3924 -2.0216 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001576870440.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:30 Heat of formation + Delta-G solvation = 60.343010 kcal Electronic energy + Delta-G solvation = -27786.765357 eV Core-core repulsion = 23870.188344 eV Total energy + Delta-G solvation = -3916.577013 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.90459 -39.14071 -38.03856 -37.53918 -34.65870 -33.73965 -33.37873 -32.06293 -30.40132 -30.15608 -29.30853 -27.61960 -26.52136 -25.25635 -23.98427 -22.52143 -22.39531 -21.02538 -20.22804 -20.02795 -19.19585 -17.58422 -17.34627 -16.89511 -16.61490 -16.03725 -15.57636 -15.38582 -15.26430 -14.80141 -14.59867 -14.29170 -14.00618 -13.77632 -13.57567 -13.33044 -13.18394 -12.83769 -12.75175 -12.51377 -12.31132 -12.08827 -11.99794 -11.95211 -11.81547 -11.54888 -11.16186 -11.09183 -10.86848 -10.57189 -10.53546 -9.89077 -9.63988 -9.46572 -9.43572 -9.18175 -9.14133 -8.92443 -8.53421 -7.51864 -7.40470 -6.82662 -4.42148 1.63556 2.04346 2.19969 2.63160 3.02783 3.04129 3.04924 3.10786 3.32754 3.67680 3.72510 3.85719 3.88320 4.15253 4.36981 4.41271 4.56513 4.68561 4.78145 4.91495 4.96747 5.03496 5.06738 5.24966 5.36596 5.50991 5.52360 5.64866 5.73208 5.89373 5.97975 6.16123 6.30475 6.31602 6.38168 6.41842 6.52625 6.66463 6.90819 6.91509 7.01730 7.23464 7.31612 7.56086 7.72605 7.83538 7.99668 8.06473 8.10338 8.24033 8.56922 8.59071 8.82958 8.91384 10.11451 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.014962 B = 0.002105 C = 0.001913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1871.018430 B =13297.284831 C =14630.594497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.068 3.932 3 H 0.055 0.945 4 C 0.131 3.869 5 N -0.278 5.278 6 N -0.251 5.251 7 C -0.012 4.012 8 C 0.596 3.404 9 O -0.546 6.546 10 N -0.703 5.703 11 C 0.183 3.817 12 C -0.243 4.243 13 C -0.069 4.069 14 C -0.230 4.230 15 C 0.117 3.883 16 C -0.459 4.459 17 H 0.078 0.922 18 C 0.076 3.924 19 N -0.788 5.788 20 Si 0.909 3.091 21 H -0.263 1.263 22 H -0.278 1.278 23 H -0.265 1.265 24 C -0.170 4.170 25 C -0.080 4.080 26 C -0.169 4.169 27 C 0.002 3.998 28 C 0.128 3.872 29 N -0.686 5.686 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.066 0.934 33 H 0.104 0.896 34 H 0.100 0.900 35 H 0.406 0.594 36 H 0.061 0.939 37 H 0.060 0.940 38 H 0.088 0.912 39 H 0.093 0.907 40 H 0.282 0.718 41 H 0.118 0.882 42 H 0.088 0.912 43 H 0.162 0.838 44 H 0.058 0.942 45 H 0.106 0.894 46 H 0.356 0.644 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.138 8.029 -19.720 25.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.042 4.042 3 H 0.073 0.927 4 C 0.011 3.989 5 N -0.068 5.068 6 N -0.087 5.087 7 C -0.173 4.173 8 C 0.380 3.620 9 O -0.423 6.423 10 N -0.353 5.353 11 C 0.062 3.938 12 C -0.245 4.245 13 C -0.088 4.088 14 C -0.249 4.249 15 C 0.114 3.886 16 C -0.488 4.488 17 H 0.096 0.904 18 C -0.143 4.143 19 N -0.412 5.412 20 Si 0.734 3.266 21 H -0.188 1.188 22 H -0.203 1.203 23 H -0.189 1.189 24 C -0.189 4.189 25 C -0.099 4.099 26 C -0.198 4.198 27 C -0.121 4.121 28 C -0.002 4.002 29 N -0.320 5.320 30 H 0.091 0.909 31 H 0.090 0.910 32 H 0.085 0.915 33 H 0.122 0.878 34 H 0.118 0.882 35 H 0.242 0.758 36 H 0.079 0.921 37 H 0.078 0.922 38 H 0.106 0.894 39 H 0.111 0.889 40 H 0.093 0.907 41 H 0.136 0.864 42 H 0.107 0.893 43 H 0.180 0.820 44 H 0.076 0.924 45 H 0.124 0.876 46 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -13.902 7.053 -18.712 24.355 hybrid contribution -0.251 0.691 0.048 0.737 sum -14.153 7.744 -18.664 24.670 Atomic orbital electron populations 1.21821 0.91909 1.03711 1.03093 1.21822 0.96741 0.95781 0.89901 0.92672 1.22333 0.73871 1.03364 0.99341 1.45613 1.07933 1.49027 1.04189 1.73417 0.99567 1.17338 1.18333 1.22140 0.91621 1.09781 0.93725 1.16953 0.85895 0.77138 0.82029 1.90755 1.28943 1.53131 1.69447 1.46400 1.12574 1.69495 1.06847 1.20002 0.84974 0.99912 0.88914 1.18976 1.18264 0.94487 0.92788 1.20410 0.98769 0.95910 0.93716 1.20954 1.11690 0.97460 0.94834 1.17663 0.86930 0.90912 0.93087 1.19612 1.38242 0.95847 0.95142 0.90353 1.25947 0.93070 0.95730 0.99566 1.69814 1.26805 1.06035 1.38561 0.86350 0.80813 0.78134 0.81352 1.18771 1.20277 1.18940 1.21311 1.06098 0.99862 0.91624 1.20570 0.99057 0.94684 0.95599 1.21182 0.95238 1.07742 0.95611 1.21153 0.92663 1.08863 0.89443 1.20630 0.86494 1.00684 0.92353 1.60581 1.03803 1.61578 1.06010 0.90857 0.90987 0.91464 0.87820 0.88175 0.75850 0.92078 0.92178 0.89362 0.88923 0.90652 0.86379 0.89342 0.81994 0.92398 0.87646 0.82394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.46 9.32 37.16 0.35 -0.11 16 2 C 0.07 0.37 3.04 -67.52 -0.21 0.16 16 3 H 0.06 0.31 8.07 -51.93 -0.42 -0.11 16 4 C 0.13 1.04 6.72 -3.58 -0.02 1.02 16 5 N -0.28 -3.36 3.76 -56.59 -0.21 -3.57 16 6 N -0.25 -3.80 11.75 33.49 0.39 -3.41 16 7 C -0.01 -0.20 7.14 -82.62 -0.59 -0.79 16 8 C 0.60 10.94 7.82 -12.39 -0.10 10.84 16 9 O -0.55 -11.28 16.93 5.31 0.09 -11.19 16 10 N -0.70 -12.76 5.55 -62.47 -0.35 -13.11 16 11 C 0.18 3.55 5.79 -5.19 -0.03 3.52 16 12 C -0.24 -5.28 5.27 -104.33 -0.55 -5.83 16 13 C -0.07 -1.54 9.67 -39.66 -0.38 -1.92 16 14 C -0.23 -5.58 9.80 -38.87 -0.38 -5.96 16 15 C 0.12 3.07 5.57 -106.83 -0.60 2.48 16 16 C -0.46 -12.01 9.05 -37.74 -0.34 -12.35 16 17 H 0.08 1.96 7.91 -52.48 -0.41 1.55 16 18 C 0.08 1.87 5.14 -17.35 -0.09 1.78 16 19 N -0.79 -20.12 10.95 55.55 0.61 -19.52 16 20 Si 0.91 18.37 29.60 -169.99 -5.03 13.34 16 21 H -0.26 -5.27 7.11 56.52 0.40 -4.87 16 22 H -0.28 -5.47 7.11 56.52 0.40 -5.07 16 23 H -0.26 -5.28 7.11 56.52 0.40 -4.88 16 24 C -0.17 -4.35 8.70 -38.87 -0.34 -4.69 16 25 C -0.08 -1.86 9.67 -39.66 -0.38 -2.24 16 26 C -0.17 -2.28 10.76 -39.58 -0.43 -2.71 16 27 C 0.00 0.03 6.66 -82.16 -0.55 -0.52 16 28 C 0.13 0.87 6.95 -4.70 -0.03 0.84 16 29 N -0.69 -3.88 6.60 -107.40 -0.71 -4.59 16 30 H 0.07 0.26 8.14 -51.93 -0.42 -0.17 16 31 H 0.07 0.18 8.14 -51.93 -0.42 -0.24 16 32 H 0.07 0.14 8.14 -51.93 -0.42 -0.28 16 33 H 0.10 0.71 8.14 -51.93 -0.42 0.28 16 34 H 0.10 0.76 8.13 -51.93 -0.42 0.34 16 35 H 0.41 7.21 8.19 -40.82 -0.33 6.88 16 36 H 0.06 1.19 8.08 -51.93 -0.42 0.77 16 37 H 0.06 1.15 8.08 -51.93 -0.42 0.73 16 38 H 0.09 1.76 8.06 -52.49 -0.42 1.34 16 39 H 0.09 2.12 8.06 -52.49 -0.42 1.70 16 40 H 0.28 6.58 8.30 -40.82 -0.34 6.24 16 41 H 0.12 3.13 6.16 -52.48 -0.32 2.81 16 42 H 0.09 1.89 8.06 -52.48 -0.42 1.47 16 43 H 0.16 1.94 8.06 -52.49 -0.42 1.51 16 44 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 45 H 0.11 0.60 8.14 -51.93 -0.42 0.18 16 46 H 0.36 1.13 8.66 -39.29 -0.34 0.79 16 LS Contribution 386.16 15.07 5.82 5.82 Total: -1.00 -31.33 386.16 -10.51 -41.84 By element: Atomic # 1 Polarization: 17.31 SS G_CDS: -6.45 Total: 10.85 kcal Atomic # 6 Polarization: -11.80 SS G_CDS: -4.67 Total: -16.47 kcal Atomic # 7 Polarization: -43.93 SS G_CDS: -0.27 Total: -44.19 kcal Atomic # 8 Polarization: -11.28 SS G_CDS: 0.09 Total: -11.19 kcal Atomic # 14 Polarization: 18.37 SS G_CDS: -5.03 Total: 13.34 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -31.33 -10.51 -41.84 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001576870440.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.186 kcal (2) G-P(sol) polarization free energy of solvation -31.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.843 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds