Wall clock time and date at job start Sat Apr 11 2020 06:05:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08995 * 109.42701 * 2 1 4 4 C 1.53296 * 109.41824 * 119.81270 * 2 1 3 5 5 N 1.47071 * 108.32556 * 170.52540 * 4 2 1 6 6 N 1.28143 * 127.26894 * 163.35171 * 5 4 2 7 7 C 1.31962 * 110.16397 * 180.36448 * 6 5 4 8 8 C 1.47713 * 126.48290 * 179.78443 * 7 6 5 9 9 O 1.21568 * 119.99530 * 179.68504 * 8 7 6 10 10 N 1.34778 * 120.00024 * 359.68995 * 8 7 6 11 11 C 1.46503 * 119.99597 * 180.27495 * 10 8 7 12 12 C 1.50697 * 109.46833 * 179.72237 * 11 10 8 13 13 C 1.38632 * 119.75367 * 269.72745 * 12 11 10 14 14 C 1.37619 * 120.25033 * 179.72470 * 13 12 11 15 15 C 1.40710 * 119.74498 * 0.52578 * 14 13 12 16 16 C 1.41394 * 120.24548 * 179.72800 * 15 14 13 17 17 H 1.08007 * 119.99746 * 24.41014 * 16 15 14 18 18 C 1.39940 * 120.00217 * 204.41021 * 16 15 14 19 19 N 1.30818 * 120.00050 * 17.85087 * 18 16 15 20 20 Si 1.86800 * 119.99981 * 197.85508 * 18 16 15 21 21 H 1.48498 * 109.47391 * 60.00151 * 20 18 16 22 22 H 1.48499 * 109.47098 * 179.97438 * 20 18 16 23 23 H 1.48502 * 109.47308 * 299.99742 * 20 18 16 24 24 C 1.40719 * 119.51148 * 359.74325 * 15 14 13 25 25 C 1.37615 * 119.74336 * 0.02562 * 24 15 14 26 26 C 1.41709 * 107.02723 * 359.52453 * 7 6 5 27 27 C 1.34502 * 105.32822 * 0.22064 * 26 7 6 28 28 C 1.50755 * 128.27408 * 180.13310 * 27 26 7 29 29 N 1.46977 * 109.42454 * 240.11635 * 2 1 3 30 30 H 1.08998 * 109.47135 * 179.88008 * 1 2 3 31 31 H 1.08999 * 109.47309 * 299.87738 * 1 2 3 32 32 H 1.09001 * 109.46905 * 59.87886 * 1 2 3 33 33 H 1.09000 * 109.69185 * 290.22756 * 4 2 1 34 34 H 1.08997 * 109.69505 * 50.77210 * 4 2 1 35 35 H 0.96997 * 119.99841 * 359.97438 * 10 8 7 36 36 H 1.09000 * 109.46905 * 299.72001 * 11 10 8 37 37 H 1.08997 * 109.47141 * 59.71939 * 11 10 8 38 38 H 1.08002 * 119.87152 * 359.97438 * 13 12 11 39 39 H 1.08001 * 120.12498 * 180.27249 * 14 13 12 40 40 H 0.96999 * 120.00362 * 180.02562 * 19 18 16 41 41 H 1.08003 * 120.12577 * 179.97438 * 24 15 14 42 42 H 1.08005 * 119.87422 * 179.97438 * 25 24 15 43 43 H 1.07991 * 127.33419 * 180.18804 * 26 7 6 44 44 H 1.09004 * 109.73811 * 284.25888 * 28 27 26 45 45 H 1.09002 * 109.73791 * 44.95673 * 28 27 26 46 46 H 1.00907 * 110.99469 * 45.07149 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8925 1.0279 0.0000 4 6 2.0396 -0.7188 1.2544 5 7 3.4921 -0.9074 1.1213 6 7 4.3264 -1.1900 2.0520 7 6 5.5472 -1.2744 1.5582 8 6 6.7807 -1.5773 2.3125 9 8 7.8487 -1.6316 1.7343 10 7 6.7219 -1.7936 3.6415 11 6 7.9461 -2.0881 4.3904 12 6 7.6099 -2.2807 5.8467 13 6 7.6265 -1.1931 6.7063 14 6 7.3156 -1.3564 8.0370 15 6 6.9909 -2.6351 8.5263 16 6 6.6754 -2.8158 9.8926 17 1 6.2986 -1.9872 10.4740 18 6 6.8514 -4.0682 10.4917 19 7 7.6146 -4.9646 9.9214 20 14 5.9963 -4.4600 12.1056 21 1 4.5262 -4.3517 11.9260 22 1 6.3425 -5.8413 12.5266 23 1 6.4400 -3.4988 13.1470 24 6 6.9827 -3.7327 7.6457 25 6 7.2922 -3.5452 6.3180 26 6 5.4502 -1.0253 0.1666 27 6 4.1442 -0.8014 -0.0643 28 6 3.4680 -0.4870 -1.3745 29 7 2.0188 -0.6906 -1.2018 30 1 -0.3633 -1.0276 -0.0022 31 1 -0.3634 0.5119 0.8911 32 1 -0.3633 0.5157 -0.8889 33 1 1.8271 -0.1141 2.1361 34 1 1.5497 -1.6880 1.3470 35 1 5.8698 -1.7499 4.1027 36 1 8.4013 -2.9979 3.9992 37 1 8.6448 -1.2581 4.2855 38 1 7.8804 -0.2134 6.3294 39 1 7.3249 -0.5070 8.7039 40 1 7.7363 -5.8329 10.3364 41 1 6.7352 -4.7186 8.0108 42 1 7.2869 -4.3862 5.6404 43 1 6.2537 -1.0166 -0.5548 44 1 3.6639 0.5491 -1.6505 45 1 3.8434 -1.1529 -2.1516 46 1 1.5115 -0.3924 -2.0216 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001576870440.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:29 Heat of formation + Delta-G solvation = 39.284581 kcal Electronic energy + Delta-G solvation = -27787.678519 eV Core-core repulsion = 23870.188344 eV Total energy + Delta-G solvation = -3917.490175 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.87179 -40.59564 -39.41575 -38.57745 -36.35516 -35.11344 -34.45502 -32.96532 -31.96680 -31.19486 -31.03425 -28.97977 -27.64549 -25.96156 -25.50008 -23.77239 -23.13081 -22.91777 -21.83794 -21.26137 -20.22172 -19.25229 -18.47502 -17.79500 -17.62016 -17.22269 -16.91984 -16.60636 -16.24711 -16.01306 -15.86262 -15.55544 -15.35355 -15.18956 -14.87748 -14.63056 -14.25376 -13.87963 -13.85664 -13.69262 -13.46531 -13.37048 -13.28321 -12.96629 -12.75982 -12.68292 -12.55836 -12.40415 -12.31009 -12.18964 -11.87349 -11.54457 -11.36703 -11.27853 -11.02303 -10.28711 -10.21402 -9.95011 -9.53589 -9.41880 -9.31077 -8.67828 -6.38200 0.47708 0.82105 1.05560 1.11816 1.37279 1.38612 1.48255 1.51430 2.18827 2.29108 2.33611 2.75260 2.89774 3.21805 3.45719 3.64529 3.72924 3.88514 3.95810 4.13071 4.26974 4.28719 4.33007 4.36192 4.47564 4.50292 4.55636 4.60778 4.63352 4.77024 4.80842 4.90420 4.96423 5.02121 5.13064 5.26304 5.30986 5.33230 5.39560 5.42723 5.66680 5.68806 5.77196 5.88791 6.06635 6.18129 6.32513 6.33767 6.48508 6.65724 6.88364 6.89955 6.98871 7.14469 8.28813 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.014962 B = 0.002105 C = 0.001913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1871.018430 B =13297.284831 C =14630.594497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.075 3.925 3 H 0.057 0.943 4 C 0.117 3.883 5 N -0.274 5.274 6 N -0.273 5.273 7 C -0.043 4.043 8 C 0.598 3.402 9 O -0.574 6.574 10 N -0.701 5.701 11 C 0.192 3.808 12 C -0.230 4.230 13 C -0.068 4.068 14 C -0.243 4.243 15 C 0.087 3.913 16 C -0.496 4.496 17 H 0.078 0.922 18 C 0.034 3.966 19 N -0.820 5.820 20 Si 0.984 3.016 21 H -0.260 1.260 22 H -0.268 1.268 23 H -0.258 1.258 24 C -0.192 4.192 25 C -0.083 4.083 26 C -0.187 4.187 27 C 0.015 3.985 28 C 0.130 3.870 29 N -0.691 5.691 30 H 0.069 0.931 31 H 0.078 0.922 32 H 0.082 0.918 33 H 0.113 0.887 34 H 0.103 0.897 35 H 0.409 0.591 36 H 0.060 0.940 37 H 0.066 0.934 38 H 0.115 0.885 39 H 0.100 0.900 40 H 0.290 0.710 41 H 0.102 0.898 42 H 0.103 0.897 43 H 0.171 0.829 44 H 0.079 0.921 45 H 0.120 0.880 46 H 0.373 0.627 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.094 9.028 -21.290 28.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.036 4.036 3 H 0.075 0.925 4 C -0.002 4.002 5 N -0.064 5.064 6 N -0.109 5.109 7 C -0.202 4.202 8 C 0.384 3.616 9 O -0.453 6.453 10 N -0.350 5.350 11 C 0.070 3.930 12 C -0.231 4.231 13 C -0.087 4.087 14 C -0.263 4.263 15 C 0.084 3.916 16 C -0.524 4.524 17 H 0.097 0.903 18 C -0.181 4.181 19 N -0.446 5.446 20 Si 0.804 3.196 21 H -0.184 1.184 22 H -0.192 1.192 23 H -0.182 1.182 24 C -0.212 4.212 25 C -0.101 4.101 26 C -0.215 4.215 27 C -0.110 4.110 28 C 0.000 4.000 29 N -0.327 5.327 30 H 0.088 0.912 31 H 0.097 0.903 32 H 0.101 0.899 33 H 0.131 0.869 34 H 0.121 0.879 35 H 0.244 0.756 36 H 0.079 0.921 37 H 0.085 0.915 38 H 0.133 0.867 39 H 0.118 0.882 40 H 0.100 0.900 41 H 0.120 0.880 42 H 0.121 0.879 43 H 0.188 0.812 44 H 0.097 0.903 45 H 0.138 0.862 46 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -15.879 8.066 -20.302 27.007 hybrid contribution 0.305 0.436 0.372 0.649 sum -15.575 8.502 -19.930 26.684 Atomic orbital electron populations 1.21798 0.89975 1.03867 1.04239 1.21821 0.98030 0.95188 0.88555 0.92463 1.22810 0.71650 1.04213 1.01522 1.46079 1.09024 1.47300 1.04036 1.73336 0.99696 1.18204 1.19706 1.21906 0.91237 1.12260 0.94785 1.17209 0.86459 0.76213 0.81756 1.90723 1.30243 1.54459 1.69894 1.46228 1.12127 1.69675 1.07020 1.19841 0.85556 1.00230 0.87366 1.19177 1.16201 0.93731 0.94012 1.20687 0.97693 0.97285 0.92989 1.21151 1.12015 0.97103 0.95989 1.18011 0.87898 0.91928 0.93757 1.19872 1.39994 0.97018 0.95561 0.90343 1.26814 0.93114 0.95013 1.03195 1.69868 1.27707 1.06613 1.40369 0.85231 0.79414 0.78293 0.76672 1.18421 1.19203 1.18240 1.21268 1.07943 0.99233 0.92718 1.20758 0.98466 0.95946 0.94971 1.21390 0.96757 1.08710 0.94685 1.21769 0.92084 1.06392 0.90738 1.20786 0.86962 1.02195 0.90022 1.60544 1.03272 1.61982 1.06914 0.91170 0.90322 0.89877 0.86906 0.87864 0.75593 0.92132 0.91547 0.86683 0.88172 0.89963 0.88010 0.87912 0.81172 0.90330 0.86161 0.80400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.45 9.32 71.98 0.67 0.22 16 2 C 0.08 0.60 3.04 45.00 0.14 0.73 16 3 H 0.06 0.46 8.07 -2.39 -0.02 0.44 16 4 C 0.12 1.65 6.72 86.37 0.58 2.23 16 5 N -0.27 -6.28 3.76 -332.96 -1.25 -7.53 16 6 N -0.27 -8.18 11.75 -47.97 -0.56 -8.75 16 7 C -0.04 -1.40 7.14 42.49 0.30 -1.09 16 8 C 0.60 22.09 7.82 86.75 0.68 22.77 16 9 O -0.57 -23.91 16.93 -3.93 -0.07 -23.98 16 10 N -0.70 -25.38 5.55 -469.83 -2.61 -27.98 16 11 C 0.19 7.33 5.79 85.63 0.50 7.82 16 12 C -0.23 -9.90 5.27 -19.68 -0.10 -10.00 16 13 C -0.07 -2.98 9.67 22.22 0.21 -2.77 16 14 C -0.24 -11.95 9.80 22.73 0.22 -11.72 16 15 C 0.09 4.69 5.57 -21.29 -0.12 4.58 16 16 C -0.50 -26.67 9.05 23.46 0.21 -26.45 16 17 H 0.08 4.04 7.91 -2.91 -0.02 4.02 16 18 C 0.03 1.73 5.14 85.26 0.44 2.17 16 19 N -0.82 -43.01 10.95 21.82 0.24 -42.77 16 20 Si 0.98 37.94 29.60 68.60 2.03 39.97 16 21 H -0.26 -9.80 7.11 99.48 0.71 -9.09 16 22 H -0.27 -9.78 7.11 99.48 0.71 -9.07 16 23 H -0.26 -9.61 7.11 99.48 0.71 -8.90 16 24 C -0.19 -10.19 8.70 22.73 0.20 -10.00 16 25 C -0.08 -3.88 9.67 22.22 0.21 -3.66 16 26 C -0.19 -4.92 10.76 22.27 0.24 -4.68 16 27 C 0.01 0.31 6.66 41.12 0.27 0.58 16 28 C 0.13 1.38 6.95 85.49 0.59 1.97 16 29 N -0.69 -5.60 6.60 -493.69 -3.26 -8.86 16 30 H 0.07 0.30 8.14 -2.39 -0.02 0.28 16 31 H 0.08 0.17 8.14 -2.39 -0.02 0.15 16 32 H 0.08 0.04 8.14 -2.39 -0.02 0.02 16 33 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16 34 H 0.10 1.41 8.13 -2.39 -0.02 1.39 16 35 H 0.41 14.53 8.19 -92.71 -0.76 13.77 16 36 H 0.06 2.33 8.08 -2.39 -0.02 2.31 16 37 H 0.07 2.47 8.08 -2.39 -0.02 2.45 16 38 H 0.12 4.40 8.06 -2.91 -0.02 4.38 16 39 H 0.10 4.64 8.06 -2.91 -0.02 4.62 16 40 H 0.29 13.74 8.30 -92.71 -0.77 12.97 16 41 H 0.10 5.65 6.16 -2.91 -0.02 5.63 16 42 H 0.10 4.44 8.06 -2.91 -0.02 4.41 16 43 H 0.17 3.99 8.06 -2.92 -0.02 3.96 16 44 H 0.08 0.57 8.14 -2.39 -0.02 0.55 16 45 H 0.12 0.98 8.14 -2.39 -0.02 0.96 16 46 H 0.37 0.97 8.66 -89.69 -0.78 0.19 16 Total: -1.00 -69.66 386.16 -0.74 -70.40 By element: Atomic # 1 Polarization: 37.32 SS G_CDS: -0.51 Total: 36.81 kcal Atomic # 6 Polarization: -32.56 SS G_CDS: 5.25 Total: -27.31 kcal Atomic # 7 Polarization: -88.45 SS G_CDS: -7.44 Total: -95.89 kcal Atomic # 8 Polarization: -23.91 SS G_CDS: -0.07 Total: -23.98 kcal Atomic # 14 Polarization: 37.94 SS G_CDS: 2.03 Total: 39.97 kcal Total: -69.66 -0.74 -70.40 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001576870440.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.683 kcal (2) G-P(sol) polarization free energy of solvation -69.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.398 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds