Wall clock time and date at job start Sat Apr 11 2020 06:05:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08995 * 109.42631 * 2 1 4 4 C 1.53290 * 109.42048 * 119.88113 * 2 1 3 5 5 N 1.47064 * 108.35852 * 170.49411 * 4 2 1 6 6 N 1.28098 * 127.30501 * 163.01285 * 5 4 2 7 7 C 1.31967 * 110.18390 * 180.23423 * 6 5 4 8 8 C 1.47682 * 126.48951 * 179.97438 * 7 6 5 9 9 O 1.21580 * 119.99722 * 180.02562 * 8 7 6 10 10 N 1.34774 * 119.99892 * 0.02562 * 8 7 6 11 11 C 1.39849 * 119.99613 * 175.38182 * 10 8 7 12 12 C 1.38900 * 120.07060 * 214.81897 * 11 10 8 13 13 C 1.38107 * 119.92312 * 179.77044 * 12 11 10 14 14 C 1.38283 * 120.07744 * 0.50908 * 13 12 11 15 15 C 1.50697 * 119.93015 * 179.72571 * 14 13 12 16 16 C 1.50702 * 109.46688 * 270.01897 * 15 14 13 17 17 H 1.07997 * 120.00436 * 0.02562 * 16 15 14 18 18 C 1.37879 * 119.99887 * 179.97438 * 16 15 14 19 19 N 1.31513 * 119.99871 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 120.00066 * 180.02562 * 18 16 15 21 21 H 1.48492 * 109.47146 * 90.00315 * 20 18 16 22 22 H 1.48506 * 109.46828 * 210.00091 * 20 18 16 23 23 H 1.48498 * 109.46965 * 329.99899 * 20 18 16 24 24 C 1.38283 * 120.14286 * 359.74218 * 14 13 12 25 25 C 1.38110 * 120.07237 * 0.02562 * 24 14 13 26 26 C 1.41718 * 107.02243 * 359.97438 * 7 6 5 27 27 C 1.34502 * 105.32899 * 359.96675 * 26 7 6 28 28 C 1.50758 * 128.27056 * 180.11778 * 27 26 7 29 29 N 1.46980 * 109.41776 * 240.18830 * 2 1 3 30 30 H 1.09006 * 109.46837 * 300.12149 * 1 2 3 31 31 H 1.08992 * 109.47396 * 60.11882 * 1 2 3 32 32 H 1.09005 * 109.47331 * 180.12566 * 1 2 3 33 33 H 1.09004 * 109.68825 * 290.22054 * 4 2 1 34 34 H 1.09001 * 109.69678 * 50.76279 * 4 2 1 35 35 H 0.96995 * 119.99748 * 355.38360 * 10 8 7 36 36 H 1.07992 * 120.03363 * 0.02593 * 12 11 10 37 37 H 1.08004 * 119.95862 * 180.27684 * 13 12 11 38 38 H 1.08999 * 109.46836 * 30.01772 * 15 14 13 39 39 H 1.08995 * 109.47555 * 150.02197 * 15 14 13 40 40 H 0.97004 * 120.00041 * 179.97438 * 19 18 16 41 41 H 1.08001 * 119.96859 * 180.02562 * 24 14 13 42 42 H 1.08005 * 120.03851 * 180.02562 * 25 24 14 43 43 H 1.08001 * 127.34113 * 179.97438 * 26 7 6 44 44 H 1.09001 * 109.74405 * 44.95725 * 28 27 26 45 45 H 1.09002 * 109.74607 * 284.24490 * 28 27 26 46 46 H 1.00904 * 110.99963 * 45.07291 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8925 1.0279 0.0000 4 6 2.0396 -0.7202 1.2535 5 7 3.4920 -0.9097 1.1205 6 7 4.3270 -1.1878 2.0513 7 6 5.5471 -1.2774 1.5565 8 6 6.7803 -1.5815 2.3100 9 8 7.8485 -1.6348 1.7318 10 7 6.7215 -1.7999 3.6386 11 6 7.8719 -2.1825 4.3359 12 6 7.7764 -3.0615 5.4070 13 6 8.9150 -3.4410 6.0904 14 6 10.1478 -2.9387 5.7161 15 6 11.3872 -3.3502 6.4680 16 6 11.6241 -2.3932 7.6078 17 1 10.9448 -1.5698 7.7716 18 6 12.7074 -2.5696 8.4423 19 7 13.5343 -3.5727 8.2431 20 14 13.0006 -1.3839 9.8556 21 1 12.3009 -1.8772 11.0688 22 1 14.4574 -1.2895 10.1283 23 1 12.4769 -0.0425 9.4930 24 6 10.2456 -2.0593 4.6534 25 6 9.1116 -1.6795 3.9627 26 6 5.4500 -1.0266 0.1650 27 6 4.1441 -0.8020 -0.0655 28 6 3.4680 -0.4855 -1.3752 29 7 2.0186 -0.6891 -1.2028 30 1 -0.3633 0.5158 0.8890 31 1 -0.3634 0.5119 -0.8910 32 1 -0.3634 -1.0277 0.0023 33 1 1.8272 -0.1165 2.1359 34 1 1.5496 -1.6896 1.3451 35 1 5.8814 -1.6917 4.1112 36 1 6.8135 -3.4510 5.7025 37 1 8.8419 -4.1280 6.9206 38 1 11.2557 -4.3583 6.8612 39 1 12.2438 -3.3319 5.7943 40 1 14.2967 -3.6966 8.8299 41 1 11.2099 -1.6690 4.3631 42 1 9.1887 -0.9929 3.1325 43 1 6.2534 -1.0179 -0.5567 44 1 3.8431 -1.1503 -2.1534 45 1 3.6639 0.5510 -1.6498 46 1 1.5114 -0.3900 -2.0221 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001650393002.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:35 Heat of formation + Delta-G solvation = 73.476230 kcal Electronic energy + Delta-G solvation = -27612.979522 eV Core-core repulsion = 23696.972008 eV Total energy + Delta-G solvation = -3916.007514 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.14581 -40.06884 -38.36396 -37.84981 -34.81419 -33.92784 -33.01557 -32.24208 -30.55648 -30.32219 -30.20685 -27.66844 -26.43949 -25.42194 -23.92534 -22.66300 -22.55334 -22.24371 -20.56897 -20.16044 -19.34481 -17.89705 -17.25432 -17.06192 -16.50887 -16.25393 -16.20602 -15.67998 -15.10514 -14.90257 -14.79387 -14.52712 -14.18149 -14.11420 -13.79878 -13.42929 -13.18400 -12.98115 -12.86992 -12.69460 -12.52432 -12.45516 -12.25310 -12.05282 -11.93065 -11.34722 -11.23533 -11.13020 -10.78925 -10.58767 -10.33235 -10.04354 -9.80779 -9.63849 -9.39163 -9.34419 -9.19487 -9.10591 -8.37197 -8.20552 -7.31267 -5.98504 -4.02286 1.29847 1.75487 1.96491 2.12581 2.20632 3.14999 3.19401 3.34093 3.39367 3.40599 3.45051 3.66694 3.96426 4.19747 4.22456 4.39375 4.44573 4.60095 4.63846 4.73249 4.79832 4.85269 4.92075 5.09090 5.12624 5.29476 5.35487 5.37506 5.51973 5.54031 5.67717 5.99902 6.02602 6.10799 6.16033 6.20451 6.27937 6.32911 6.48862 6.73465 6.88017 6.98407 7.23950 7.28172 7.49856 7.58173 7.73381 7.78775 7.93748 7.97507 8.25110 8.38568 9.03108 9.61125 11.11045 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.031242 B = 0.001751 C = 0.001713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 896.021329 B =15987.868277 C =16344.572277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.068 3.932 3 H 0.056 0.944 4 C 0.131 3.869 5 N -0.276 5.276 6 N -0.255 5.255 7 C -0.014 4.014 8 C 0.602 3.398 9 O -0.514 6.514 10 N -0.654 5.654 11 C 0.103 3.897 12 C -0.140 4.140 13 C -0.109 4.109 14 C -0.042 4.042 15 C 0.047 3.953 16 C -0.510 4.510 17 H 0.057 0.943 18 C 0.057 3.943 19 N -0.894 5.894 20 Si 0.895 3.105 21 H -0.280 1.280 22 H -0.286 1.286 23 H -0.273 1.273 24 C -0.109 4.109 25 C -0.117 4.117 26 C -0.165 4.165 27 C 0.006 3.994 28 C 0.127 3.873 29 N -0.686 5.686 30 H 0.071 0.929 31 H 0.067 0.933 32 H 0.073 0.927 33 H 0.104 0.896 34 H 0.101 0.899 35 H 0.411 0.589 36 H 0.114 0.886 37 H 0.122 0.878 38 H 0.029 0.971 39 H 0.029 0.971 40 H 0.261 0.739 41 H 0.122 0.878 42 H 0.129 0.871 43 H 0.165 0.835 44 H 0.107 0.893 45 H 0.060 0.940 46 H 0.358 0.642 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.639 7.835 -20.284 36.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.043 4.043 3 H 0.074 0.926 4 C 0.011 3.989 5 N -0.065 5.065 6 N -0.090 5.090 7 C -0.174 4.174 8 C 0.387 3.613 9 O -0.387 6.387 10 N -0.299 5.299 11 C 0.010 3.990 12 C -0.161 4.161 13 C -0.128 4.128 14 C -0.043 4.043 15 C 0.011 3.989 16 C -0.548 4.548 17 H 0.076 0.924 18 C -0.144 4.144 19 N -0.533 5.533 20 Si 0.723 3.277 21 H -0.207 1.207 22 H -0.212 1.212 23 H -0.198 1.198 24 C -0.128 4.128 25 C -0.136 4.136 26 C -0.193 4.193 27 C -0.117 4.117 28 C -0.003 4.003 29 N -0.320 5.320 30 H 0.090 0.910 31 H 0.086 0.914 32 H 0.092 0.908 33 H 0.122 0.878 34 H 0.119 0.881 35 H 0.246 0.754 36 H 0.132 0.868 37 H 0.140 0.860 38 H 0.047 0.953 39 H 0.047 0.953 40 H 0.071 0.929 41 H 0.140 0.860 42 H 0.147 0.853 43 H 0.183 0.817 44 H 0.125 0.875 45 H 0.078 0.922 46 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -29.400 7.040 -19.319 35.877 hybrid contribution 0.166 1.594 0.117 1.607 sum -29.234 8.634 -19.202 36.026 Atomic orbital electron populations 1.21824 0.91821 1.03732 1.03177 1.21827 0.96819 0.95808 0.89863 0.92603 1.22359 0.73673 1.03388 0.99479 1.45602 1.07938 1.48822 1.04162 1.73310 0.99472 1.17673 1.18594 1.21895 0.91260 1.10424 0.93819 1.16873 0.86299 0.76858 0.81262 1.90811 1.28469 1.50378 1.69029 1.43156 1.11947 1.67360 1.07396 1.17531 0.86179 0.99447 0.95810 1.20762 0.98882 0.98696 0.97722 1.20873 0.91525 1.00785 0.99587 1.20722 0.96916 0.93411 0.93203 1.18354 0.89138 0.97089 0.94353 1.21082 1.10066 1.11933 1.11756 0.92445 1.25013 0.95947 0.95598 0.97821 1.69962 1.14915 1.29857 1.38607 0.86542 0.77261 0.81458 0.82475 1.20651 1.21201 1.19827 1.21011 0.97859 0.98193 0.95722 1.21146 0.91281 1.00560 1.00654 1.21210 0.95416 1.07188 0.95468 1.21192 0.92571 1.08485 0.89493 1.20661 0.86502 1.00880 0.92255 1.60587 1.03794 1.61588 1.06053 0.91000 0.91358 0.90845 0.87818 0.88099 0.75366 0.86770 0.85995 0.95310 0.95252 0.92900 0.86039 0.85301 0.81703 0.87466 0.92200 0.82226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.21 9.32 37.16 0.35 0.14 16 2 C 0.07 0.24 3.05 -67.52 -0.21 0.04 16 3 H 0.06 0.22 8.07 -51.93 -0.42 -0.20 16 4 C 0.13 0.73 6.72 -3.58 -0.02 0.71 16 5 N -0.28 -2.65 3.76 -56.58 -0.21 -2.86 16 6 N -0.25 -3.09 11.76 33.48 0.39 -2.70 16 7 C -0.01 -0.19 7.14 -82.62 -0.59 -0.78 16 8 C 0.60 9.65 7.67 -12.40 -0.10 9.55 16 9 O -0.51 -9.68 14.36 5.30 0.08 -9.60 16 10 N -0.65 -10.00 5.33 -10.76 -0.06 -10.05 16 11 C 0.10 1.85 6.30 -83.71 -0.53 1.32 16 12 C -0.14 -2.47 9.97 -39.38 -0.39 -2.87 16 13 C -0.11 -2.20 9.69 -39.61 -0.38 -2.59 16 14 C -0.04 -0.96 5.07 -104.59 -0.53 -1.49 16 15 C 0.05 1.26 5.10 -29.04 -0.15 1.11 16 16 C -0.51 -14.58 9.09 -34.44 -0.31 -14.89 16 17 H 0.06 1.63 7.74 -52.49 -0.41 1.22 16 18 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 19 N -0.89 -26.84 13.29 55.43 0.74 -26.11 16 20 Si 0.89 21.91 29.54 -169.99 -5.02 16.89 16 21 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 22 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 23 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 24 C -0.11 -2.33 9.69 -39.61 -0.38 -2.72 16 25 C -0.12 -2.30 8.70 -39.39 -0.34 -2.64 16 26 C -0.16 -1.89 10.76 -39.57 -0.43 -2.32 16 27 C 0.01 0.06 6.66 -82.14 -0.55 -0.49 16 28 C 0.13 0.67 6.95 -4.69 -0.03 0.63 16 29 N -0.69 -2.78 6.60 -107.39 -0.71 -3.49 16 30 H 0.07 0.05 8.14 -51.93 -0.42 -0.37 16 31 H 0.07 0.04 8.14 -51.93 -0.42 -0.38 16 32 H 0.07 0.13 8.14 -51.93 -0.42 -0.29 16 33 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.10 0.52 8.13 -51.93 -0.42 0.10 16 35 H 0.41 5.23 8.55 -40.82 -0.35 4.88 16 36 H 0.11 1.65 8.06 -52.49 -0.42 1.23 16 37 H 0.12 2.34 8.06 -52.48 -0.42 1.92 16 38 H 0.03 0.79 8.08 -51.93 -0.42 0.37 16 39 H 0.03 0.81 8.08 -51.93 -0.42 0.39 16 40 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 41 H 0.12 2.52 8.06 -52.49 -0.42 2.10 16 42 H 0.13 2.51 6.22 -52.48 -0.33 2.19 16 43 H 0.17 1.69 8.06 -52.49 -0.42 1.27 16 44 H 0.11 0.46 8.14 -51.93 -0.42 0.04 16 45 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 46 H 0.36 0.63 8.66 -39.29 -0.34 0.29 16 LS Contribution 386.19 15.07 5.82 5.82 Total: -1.00 -35.13 386.19 -10.13 -45.26 By element: Atomic # 1 Polarization: 9.04 SS G_CDS: -6.47 Total: 2.58 kcal Atomic # 6 Polarization: -11.03 SS G_CDS: -4.69 Total: -15.72 kcal Atomic # 7 Polarization: -45.37 SS G_CDS: 0.15 Total: -45.22 kcal Atomic # 8 Polarization: -9.68 SS G_CDS: 0.08 Total: -9.60 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -35.13 -10.13 -45.26 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001650393002.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.734 kcal (2) G-P(sol) polarization free energy of solvation -35.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.257 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds