Wall clock time and date at job start Sat Apr 11 2020 06:05:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08995 * 109.42631 * 2 1 4 4 C 1.53290 * 109.42048 * 119.88113 * 2 1 3 5 5 N 1.47064 * 108.35852 * 170.49411 * 4 2 1 6 6 N 1.28098 * 127.30501 * 163.01285 * 5 4 2 7 7 C 1.31967 * 110.18390 * 180.23423 * 6 5 4 8 8 C 1.47682 * 126.48951 * 179.97438 * 7 6 5 9 9 O 1.21580 * 119.99722 * 180.02562 * 8 7 6 10 10 N 1.34774 * 119.99892 * 0.02562 * 8 7 6 11 11 C 1.39849 * 119.99613 * 175.38182 * 10 8 7 12 12 C 1.38900 * 120.07060 * 214.81897 * 11 10 8 13 13 C 1.38107 * 119.92312 * 179.77044 * 12 11 10 14 14 C 1.38283 * 120.07744 * 0.50908 * 13 12 11 15 15 C 1.50697 * 119.93015 * 179.72571 * 14 13 12 16 16 C 1.50702 * 109.46688 * 270.01897 * 15 14 13 17 17 H 1.07997 * 120.00436 * 0.02562 * 16 15 14 18 18 C 1.37879 * 119.99887 * 179.97438 * 16 15 14 19 19 N 1.31513 * 119.99871 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 120.00066 * 180.02562 * 18 16 15 21 21 H 1.48492 * 109.47146 * 90.00315 * 20 18 16 22 22 H 1.48506 * 109.46828 * 210.00091 * 20 18 16 23 23 H 1.48498 * 109.46965 * 329.99899 * 20 18 16 24 24 C 1.38283 * 120.14286 * 359.74218 * 14 13 12 25 25 C 1.38110 * 120.07237 * 0.02562 * 24 14 13 26 26 C 1.41718 * 107.02243 * 359.97438 * 7 6 5 27 27 C 1.34502 * 105.32899 * 359.96675 * 26 7 6 28 28 C 1.50758 * 128.27056 * 180.11778 * 27 26 7 29 29 N 1.46980 * 109.41776 * 240.18830 * 2 1 3 30 30 H 1.09006 * 109.46837 * 300.12149 * 1 2 3 31 31 H 1.08992 * 109.47396 * 60.11882 * 1 2 3 32 32 H 1.09005 * 109.47331 * 180.12566 * 1 2 3 33 33 H 1.09004 * 109.68825 * 290.22054 * 4 2 1 34 34 H 1.09001 * 109.69678 * 50.76279 * 4 2 1 35 35 H 0.96995 * 119.99748 * 355.38360 * 10 8 7 36 36 H 1.07992 * 120.03363 * 0.02593 * 12 11 10 37 37 H 1.08004 * 119.95862 * 180.27684 * 13 12 11 38 38 H 1.08999 * 109.46836 * 30.01772 * 15 14 13 39 39 H 1.08995 * 109.47555 * 150.02197 * 15 14 13 40 40 H 0.97004 * 120.00041 * 179.97438 * 19 18 16 41 41 H 1.08001 * 119.96859 * 180.02562 * 24 14 13 42 42 H 1.08005 * 120.03851 * 180.02562 * 25 24 14 43 43 H 1.08001 * 127.34113 * 179.97438 * 26 7 6 44 44 H 1.09001 * 109.74405 * 44.95725 * 28 27 26 45 45 H 1.09002 * 109.74607 * 284.24490 * 28 27 26 46 46 H 1.00904 * 110.99963 * 45.07291 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8925 1.0279 0.0000 4 6 2.0396 -0.7202 1.2535 5 7 3.4920 -0.9097 1.1205 6 7 4.3270 -1.1878 2.0513 7 6 5.5471 -1.2774 1.5565 8 6 6.7803 -1.5815 2.3100 9 8 7.8485 -1.6348 1.7318 10 7 6.7215 -1.7999 3.6386 11 6 7.8719 -2.1825 4.3359 12 6 7.7764 -3.0615 5.4070 13 6 8.9150 -3.4410 6.0904 14 6 10.1478 -2.9387 5.7161 15 6 11.3872 -3.3502 6.4680 16 6 11.6241 -2.3932 7.6078 17 1 10.9448 -1.5698 7.7716 18 6 12.7074 -2.5696 8.4423 19 7 13.5343 -3.5727 8.2431 20 14 13.0006 -1.3839 9.8556 21 1 12.3009 -1.8772 11.0688 22 1 14.4574 -1.2895 10.1283 23 1 12.4769 -0.0425 9.4930 24 6 10.2456 -2.0593 4.6534 25 6 9.1116 -1.6795 3.9627 26 6 5.4500 -1.0266 0.1650 27 6 4.1441 -0.8020 -0.0655 28 6 3.4680 -0.4855 -1.3752 29 7 2.0186 -0.6891 -1.2028 30 1 -0.3633 0.5158 0.8890 31 1 -0.3634 0.5119 -0.8910 32 1 -0.3634 -1.0277 0.0023 33 1 1.8272 -0.1165 2.1359 34 1 1.5496 -1.6896 1.3451 35 1 5.8814 -1.6917 4.1112 36 1 6.8135 -3.4510 5.7025 37 1 8.8419 -4.1280 6.9206 38 1 11.2557 -4.3583 6.8612 39 1 12.2438 -3.3319 5.7943 40 1 14.2967 -3.6966 8.8299 41 1 11.2099 -1.6690 4.3631 42 1 9.1887 -0.9929 3.1325 43 1 6.2534 -1.0179 -0.5567 44 1 3.8431 -1.1503 -2.1534 45 1 3.6639 0.5510 -1.6498 46 1 1.5114 -0.3900 -2.0221 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001650393002.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:34 Heat of formation + Delta-G solvation = 49.330590 kcal Electronic energy + Delta-G solvation = -27614.026556 eV Core-core repulsion = 23696.972008 eV Total energy + Delta-G solvation = -3917.054547 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.93460 -41.42813 -39.55477 -38.58865 -36.34179 -35.00196 -34.48998 -33.05305 -32.05519 -31.79527 -31.06840 -28.87598 -27.65639 -25.96335 -25.39369 -24.09694 -23.74770 -23.16438 -21.96470 -21.24815 -20.24253 -18.91493 -18.49112 -18.11586 -17.84181 -17.50115 -16.84753 -16.76973 -16.35185 -15.97191 -15.94888 -15.75108 -15.37618 -15.17541 -14.74996 -14.58568 -14.50768 -14.29612 -13.90288 -13.71090 -13.49678 -13.38931 -13.27354 -13.16485 -12.69063 -12.62300 -12.56365 -12.47715 -12.31769 -12.08391 -11.94583 -11.71371 -11.56806 -11.24689 -10.92142 -10.59028 -10.24584 -10.19225 -9.78688 -9.55053 -8.92446 -8.17509 -6.31846 0.16138 0.55092 0.65528 1.02577 1.31843 1.40359 1.41788 1.53351 1.97673 2.21638 2.41216 2.87698 2.97634 3.11967 3.14775 3.41534 3.57826 3.85314 3.95463 4.04593 4.13719 4.23647 4.29318 4.34551 4.37276 4.43343 4.55623 4.57271 4.60287 4.63454 4.69194 4.79663 4.89105 4.97208 5.11514 5.20802 5.31143 5.31745 5.34121 5.41228 5.45015 5.57691 5.65362 5.74829 5.76300 6.06432 6.10661 6.23701 6.28411 6.33462 6.80375 6.80552 7.01689 7.36408 8.90792 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.031242 B = 0.001751 C = 0.001713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 896.021329 B =15987.868277 C =16344.572277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.072 3.928 3 H 0.057 0.943 4 C 0.118 3.882 5 N -0.270 5.270 6 N -0.262 5.262 7 C -0.043 4.043 8 C 0.602 3.398 9 O -0.549 6.549 10 N -0.645 5.645 11 C 0.114 3.886 12 C -0.126 4.126 13 C -0.112 4.112 14 C -0.072 4.072 15 C 0.057 3.943 16 C -0.528 4.528 17 H 0.055 0.945 18 C 0.004 3.996 19 N -0.930 5.930 20 Si 0.967 3.033 21 H -0.269 1.269 22 H -0.280 1.280 23 H -0.267 1.267 24 C -0.119 4.119 25 C -0.122 4.122 26 C -0.185 4.185 27 C 0.016 3.984 28 C 0.128 3.872 29 N -0.692 5.692 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.070 0.930 33 H 0.118 0.882 34 H 0.107 0.893 35 H 0.425 0.575 36 H 0.156 0.844 37 H 0.129 0.871 38 H 0.008 0.992 39 H 0.001 0.999 40 H 0.265 0.735 41 H 0.114 0.886 42 H 0.129 0.871 43 H 0.168 0.832 44 H 0.119 0.881 45 H 0.078 0.922 46 H 0.373 0.627 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.403 9.189 -20.789 40.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.039 4.039 3 H 0.075 0.925 4 C -0.001 4.001 5 N -0.060 5.060 6 N -0.099 5.099 7 C -0.201 4.201 8 C 0.390 3.610 9 O -0.424 6.424 10 N -0.290 5.290 11 C 0.021 3.979 12 C -0.145 4.145 13 C -0.130 4.130 14 C -0.072 4.072 15 C 0.020 3.980 16 C -0.566 4.566 17 H 0.073 0.927 18 C -0.194 4.194 19 N -0.570 5.570 20 Si 0.791 3.209 21 H -0.195 1.195 22 H -0.205 1.205 23 H -0.192 1.192 24 C -0.137 4.137 25 C -0.142 4.142 26 C -0.213 4.213 27 C -0.109 4.109 28 C -0.002 4.002 29 N -0.327 5.327 30 H 0.099 0.901 31 H 0.098 0.902 32 H 0.089 0.911 33 H 0.136 0.864 34 H 0.125 0.875 35 H 0.264 0.736 36 H 0.173 0.827 37 H 0.147 0.853 38 H 0.027 0.973 39 H 0.020 0.980 40 H 0.074 0.926 41 H 0.132 0.868 42 H 0.147 0.853 43 H 0.186 0.814 44 H 0.137 0.863 45 H 0.095 0.905 46 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -33.221 8.400 -19.832 39.591 hybrid contribution 1.157 1.174 0.147 1.655 sum -32.063 9.575 -19.684 38.823 Atomic orbital electron populations 1.21799 0.89984 1.03898 1.04228 1.21850 0.98053 0.95254 0.88697 0.92546 1.22841 0.71336 1.04421 1.01459 1.46082 1.09079 1.46971 1.03893 1.73233 0.99239 1.17971 1.19497 1.21591 0.90936 1.13013 0.94534 1.17226 0.86792 0.75781 0.81230 1.90787 1.30056 1.51899 1.69694 1.43077 1.11627 1.66992 1.07320 1.17634 0.86486 0.98351 0.95468 1.21031 0.99674 0.97398 0.96438 1.20974 0.91302 1.00718 1.00017 1.20450 0.96537 0.95792 0.94453 1.18100 0.90214 0.95848 0.93834 1.21388 1.10368 1.12242 1.12623 0.92658 1.25938 0.95514 0.97355 1.00621 1.70088 1.15462 1.31586 1.39857 0.85420 0.77405 0.79092 0.78978 1.19460 1.20521 1.19189 1.20950 0.98375 0.98489 0.95920 1.21149 0.91641 1.00901 1.00537 1.21391 0.96834 1.08295 0.94821 1.21715 0.91979 1.06351 0.90805 1.20786 0.87082 1.02119 0.90173 1.60568 1.03173 1.62005 1.07004 0.90124 0.90187 0.91085 0.86358 0.87475 0.73638 0.82651 0.85268 0.97341 0.98039 0.92587 0.86774 0.85347 0.81414 0.86340 0.90460 0.80480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 0.06 9.32 71.98 0.67 0.73 16 2 C 0.07 0.29 3.05 45.00 0.14 0.43 16 3 H 0.06 0.25 8.07 -2.39 -0.02 0.23 16 4 C 0.12 1.01 6.72 86.37 0.58 1.59 16 5 N -0.27 -4.66 3.76 -332.94 -1.25 -5.91 16 6 N -0.26 -6.01 11.76 -47.98 -0.56 -6.57 16 7 C -0.04 -1.14 7.14 42.48 0.30 -0.83 16 8 C 0.60 19.23 7.67 86.74 0.67 19.89 16 9 O -0.55 -21.08 14.36 -3.97 -0.06 -21.13 16 10 N -0.64 -18.97 5.33 -306.23 -1.63 -20.60 16 11 C 0.11 4.01 6.30 38.18 0.24 4.25 16 12 C -0.13 -4.20 9.97 22.40 0.22 -3.97 16 13 C -0.11 -4.49 9.69 22.25 0.22 -4.27 16 14 C -0.07 -3.39 5.07 -19.84 -0.10 -3.49 16 15 C 0.06 3.19 5.10 29.10 0.15 3.33 16 16 C -0.53 -31.11 9.09 25.60 0.23 -30.88 16 17 H 0.06 3.20 7.74 -2.91 -0.02 3.18 16 18 C 0.00 0.22 5.46 84.66 0.46 0.68 16 19 N -0.93 -57.28 13.29 21.45 0.28 -56.99 16 20 Si 0.97 45.33 29.54 68.60 2.03 47.35 16 21 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 22 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 23 H -0.27 -12.18 7.11 99.48 0.71 -11.48 16 24 C -0.12 -5.28 9.69 22.25 0.22 -5.07 16 25 C -0.12 -4.90 8.70 22.40 0.19 -4.71 16 26 C -0.19 -4.15 10.76 22.27 0.24 -3.91 16 27 C 0.02 0.27 6.66 41.11 0.27 0.54 16 28 C 0.13 1.00 6.95 85.48 0.59 1.59 16 29 N -0.69 -3.45 6.60 -493.66 -3.26 -6.71 16 30 H 0.08 -0.15 8.14 -2.38 -0.02 -0.17 16 31 H 0.08 -0.18 8.14 -2.39 -0.02 -0.20 16 32 H 0.07 0.04 8.14 -2.38 -0.02 0.02 16 33 H 0.12 0.67 8.14 -2.38 -0.02 0.65 16 34 H 0.11 0.82 8.13 -2.39 -0.02 0.80 16 35 H 0.43 10.02 8.55 -92.71 -0.79 9.23 16 36 H 0.16 3.92 8.06 -2.91 -0.02 3.89 16 37 H 0.13 4.94 8.06 -2.91 -0.02 4.91 16 38 H 0.01 0.49 8.08 -2.39 -0.02 0.47 16 39 H 0.00 0.08 8.08 -2.39 -0.02 0.06 16 40 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 41 H 0.11 5.08 8.06 -2.91 -0.02 5.05 16 42 H 0.13 5.16 6.22 -2.91 -0.02 5.14 16 43 H 0.17 3.46 8.06 -2.91 -0.02 3.44 16 44 H 0.12 0.69 8.14 -2.39 -0.02 0.67 16 45 H 0.08 0.38 8.14 -2.39 -0.02 0.36 16 46 H 0.37 0.04 8.66 -89.69 -0.78 -0.74 16 Total: -1.00 -78.34 386.19 0.30 -78.04 By element: Atomic # 1 Polarization: 17.17 SS G_CDS: -0.55 Total: 16.62 kcal Atomic # 6 Polarization: -29.39 SS G_CDS: 5.30 Total: -24.09 kcal Atomic # 7 Polarization: -90.37 SS G_CDS: -6.42 Total: -96.79 kcal Atomic # 8 Polarization: -21.08 SS G_CDS: -0.06 Total: -21.13 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 2.03 Total: 47.35 kcal Total: -78.34 0.30 -78.04 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001650393002.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.369 kcal (2) G-P(sol) polarization free energy of solvation -78.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.039 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds