Wall clock time and date at job start Sat Apr 11 2020 06:05:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 110.63890 * 2 1 4 4 C 1.54329 * 110.72278 * 236.86002 * 2 1 3 5 5 N 1.47023 * 107.26650 * 263.83053 * 4 2 1 6 6 C 1.34782 * 125.64317 * 181.02008 * 5 4 2 7 7 O 1.21506 * 119.99832 * 180.02562 * 6 5 4 8 8 C 1.48235 * 120.00031 * 0.02562 * 6 5 4 9 9 C 1.40572 * 119.74581 * 179.97438 * 8 6 5 10 10 N 1.31262 * 120.56908 * 180.02562 * 9 8 6 11 11 C 1.33784 * 119.80308 * 359.97438 * 10 9 8 12 12 C 1.40545 * 120.98699 * 180.02562 * 11 10 9 13 13 C 1.36079 * 119.74842 * 179.97438 * 12 11 10 14 14 C 1.39483 * 121.01483 * 0.02562 * 13 12 11 15 15 C 1.35986 * 120.98298 * 359.97438 * 14 13 12 16 16 C 1.40825 * 119.70163 * 359.97438 * 15 14 13 17 17 N 1.32163 * 119.74803 * 0.02562 * 8 6 5 18 18 C 1.47423 * 108.70485 * 1.28449 * 5 4 2 19 19 C 1.55132 * 104.72366 * 335.55288 * 18 5 4 20 20 H 1.08996 * 111.22817 * 279.17979 * 19 18 5 21 21 C 1.52993 * 110.90442 * 155.27321 * 19 18 5 22 22 N 1.46505 * 109.46818 * 72.97993 * 21 19 18 23 23 C 1.36938 * 119.99906 * 179.97438 * 22 21 19 24 24 H 1.08011 * 120.00053 * 359.97438 * 23 22 21 25 25 C 1.38803 * 120.00327 * 179.97438 * 23 22 21 26 26 N 1.31626 * 119.99943 * 0.02562 * 25 23 22 27 27 Si 1.86806 * 120.00364 * 179.97438 * 25 23 22 28 28 H 1.48500 * 109.46899 * 359.97438 * 27 25 23 29 29 H 1.48498 * 109.47131 * 119.99939 * 27 25 23 30 30 H 1.48504 * 109.46985 * 239.99792 * 27 25 23 31 31 H 1.09000 * 109.46917 * 181.68379 * 1 2 3 32 32 H 1.08999 * 109.47335 * 301.69092 * 1 2 3 33 33 H 1.09002 * 109.47402 * 61.68918 * 1 2 3 34 34 H 1.08999 * 109.88492 * 144.41112 * 4 2 1 35 35 H 1.09005 * 110.00867 * 23.31685 * 4 2 1 36 36 H 1.08001 * 119.71624 * 359.97438 * 9 8 6 37 37 H 1.07997 * 120.12629 * 0.02562 * 12 11 10 38 38 H 1.08001 * 119.48873 * 180.02562 * 13 12 11 39 39 H 1.07997 * 119.50383 * 180.02562 * 14 13 12 40 40 H 1.08004 * 120.14895 * 180.27904 * 15 14 13 41 41 H 1.08993 * 110.36624 * 94.48476 * 18 5 4 42 42 H 1.08998 * 110.36291 * 216.80548 * 18 5 4 43 43 H 1.09003 * 109.47156 * 192.97911 * 21 19 18 44 44 H 1.08995 * 109.47668 * 312.98005 * 21 19 18 45 45 H 0.96996 * 120.00152 * 359.97438 * 22 21 19 46 46 H 0.96992 * 120.00160 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0200 0.0000 4 6 2.0761 -0.7891 -1.2086 5 7 2.3716 -2.1519 -0.7426 6 6 2.8850 -3.1452 -1.4951 7 8 3.0888 -4.2372 -1.0027 8 6 3.2009 -2.9056 -2.9234 9 6 3.7367 -3.9453 -3.7032 10 7 4.0229 -3.7508 -4.9694 11 6 3.8030 -2.5536 -5.5245 12 6 4.0998 -2.3181 -6.8779 13 6 3.8655 -1.0907 -7.4168 14 6 3.3340 -0.0568 -6.6460 15 6 3.0338 -0.2455 -5.3332 16 6 3.2609 -1.5020 -4.7391 17 7 2.9777 -1.7158 -3.4538 18 6 2.0075 -2.2536 0.6823 19 6 2.0790 -0.7974 1.2125 20 1 3.1058 -0.5092 1.4370 21 6 1.1815 -0.6182 2.4385 22 7 1.7914 -1.2848 3.5917 23 6 1.1642 -1.2577 4.8088 24 1 0.2202 -0.7446 4.9186 25 6 1.7417 -1.8897 5.9014 26 7 2.8925 -2.5146 5.7677 27 14 0.8866 -1.8522 7.5618 28 1 -0.3824 -1.0894 7.4478 29 1 0.5926 -3.2407 7.9986 30 1 1.7702 -1.1962 8.5589 31 1 -0.3633 -1.0272 0.0302 32 1 -0.3634 0.5399 0.8744 33 1 -0.3634 0.4874 -0.9047 34 1 2.9869 -0.3179 -1.5781 35 1 1.3283 -0.8223 -2.0011 36 1 3.9152 -4.9122 -3.2564 37 1 4.5114 -3.1084 -7.4881 38 1 4.0947 -0.9144 -8.4574 39 1 3.1575 0.9076 -7.0988 40 1 2.6185 0.5631 -4.7500 41 1 0.9974 -2.6492 0.7884 42 1 2.7208 -2.8851 1.2119 43 1 1.0661 0.4445 2.6521 44 1 0.2037 -1.0571 2.2403 45 1 2.6393 -1.7453 3.4932 46 1 3.2958 -2.9566 6.5311 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716985304.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:37 Heat of formation + Delta-G solvation = 57.334415 kcal Electronic energy + Delta-G solvation = -28749.405033 eV Core-core repulsion = 24832.697558 eV Total energy + Delta-G solvation = -3916.707476 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.91328 -40.10359 -38.30532 -37.49170 -35.40405 -34.59662 -32.84164 -31.38020 -31.13761 -31.04541 -28.99656 -26.85739 -26.22077 -25.50441 -24.54953 -23.15580 -22.69956 -21.74856 -20.44242 -19.25955 -18.73146 -18.70144 -17.48293 -16.81708 -16.41165 -16.10699 -15.79356 -15.43284 -15.16782 -14.80709 -14.74872 -14.51619 -14.17410 -13.87916 -13.53454 -13.27428 -12.95742 -12.66689 -12.51936 -12.41386 -12.34262 -12.28989 -12.23067 -12.06240 -11.99052 -11.68888 -11.53437 -10.99310 -10.84228 -10.51274 -10.43384 -10.34926 -10.29164 -9.94399 -9.66491 -9.42877 -9.41636 -9.07194 -8.86106 -8.57536 -6.90526 -5.74150 -3.03386 -0.39064 0.00409 1.41209 2.07750 2.75152 2.89728 3.45131 3.47702 3.50397 3.52947 3.63968 3.67164 3.80793 4.23721 4.35569 4.46558 4.59102 4.63524 4.65477 4.76833 4.81640 4.94323 4.98992 5.32330 5.37364 5.39629 5.49568 5.57265 5.58048 5.61528 5.66828 5.72339 5.83398 5.88497 5.94363 5.99874 6.06761 6.14671 6.18026 6.21281 6.34464 6.38965 6.47095 6.70717 6.73405 6.84648 7.20778 7.46435 7.72027 7.99306 8.44177 9.55419 10.12693 10.46831 11.48606 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.023798 B = 0.002277 C = 0.002123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1176.284149 B =12295.618424 C =13182.984623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.102 4.102 3 H 0.089 0.911 4 C 0.120 3.880 5 N -0.592 5.592 6 C 0.580 3.420 7 O -0.524 6.524 8 C 0.068 3.932 9 C 0.130 3.870 10 N -0.426 5.426 11 C 0.091 3.909 12 C -0.088 4.088 13 C -0.090 4.090 14 C -0.103 4.103 15 C -0.074 4.074 16 C 0.074 3.926 17 N -0.387 5.387 18 C 0.115 3.885 19 C -0.101 4.101 20 H 0.086 0.914 21 C 0.166 3.834 22 N -0.734 5.734 23 C -0.239 4.239 24 H 0.071 0.929 25 C -0.014 4.014 26 N -0.931 5.931 27 Si 0.906 3.094 28 H -0.281 1.281 29 H -0.292 1.292 30 H -0.292 1.292 31 H 0.057 0.943 32 H 0.066 0.934 33 H 0.051 0.949 34 H 0.073 0.927 35 H 0.074 0.926 36 H 0.189 0.811 37 H 0.142 0.858 38 H 0.137 0.863 39 H 0.138 0.862 40 H 0.144 0.856 41 H 0.076 0.924 42 H 0.086 0.914 43 H 0.024 0.976 44 H 0.026 0.974 45 H 0.384 0.616 46 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.438 6.306 -29.621 30.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.122 4.122 3 H 0.107 0.893 4 C -0.003 4.003 5 N -0.324 5.324 6 C 0.365 3.635 7 O -0.400 6.400 8 C -0.088 4.088 9 C -0.045 4.045 10 N -0.140 5.140 11 C -0.034 4.034 12 C -0.108 4.108 13 C -0.111 4.111 14 C -0.123 4.123 15 C -0.093 4.093 16 C -0.053 4.053 17 N -0.106 5.106 18 C -0.006 4.006 19 C -0.121 4.121 20 H 0.104 0.896 21 C 0.038 3.962 22 N -0.378 5.378 23 C -0.370 4.370 24 H 0.089 0.911 25 C -0.210 4.210 26 N -0.580 5.580 27 Si 0.738 3.262 28 H -0.206 1.206 29 H -0.219 1.219 30 H -0.219 1.219 31 H 0.076 0.924 32 H 0.085 0.915 33 H 0.071 0.929 34 H 0.091 0.909 35 H 0.092 0.908 36 H 0.206 0.794 37 H 0.159 0.841 38 H 0.155 0.845 39 H 0.156 0.844 40 H 0.161 0.839 41 H 0.094 0.906 42 H 0.105 0.895 43 H 0.042 0.958 44 H 0.043 0.957 45 H 0.217 0.783 46 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 0.454 5.797 -29.403 29.973 hybrid contribution -0.090 -0.148 0.924 0.940 sum 0.363 5.649 -28.479 29.036 Atomic orbital electron populations 1.21834 0.94149 1.02300 1.01767 1.22296 0.96616 0.99311 0.93966 0.89304 1.22239 1.00661 0.81128 0.96251 1.48390 1.60188 1.11712 1.12090 1.17237 0.78701 0.83907 0.83627 1.90847 1.53844 1.23260 1.72063 1.22487 0.98793 0.91106 0.96425 1.24012 0.91155 1.00342 0.89010 1.68853 1.13623 1.20357 1.11130 1.19829 0.97476 0.90223 0.95856 1.20838 0.99574 0.98130 0.92229 1.21111 0.96811 0.92450 1.00681 1.21054 0.97765 0.99829 0.93655 1.20908 0.98466 0.94856 0.95089 1.19682 0.99596 0.95715 0.90279 1.68826 1.10846 1.20394 1.10485 1.22504 1.01547 0.98265 0.78312 1.22661 1.01265 0.93242 0.94906 0.89565 1.20636 0.94145 0.95981 0.85456 1.42403 1.25671 1.64428 1.05303 1.19245 1.03024 1.28200 0.86576 0.91129 1.24754 0.97329 1.00791 0.98141 1.69671 1.18145 1.40014 1.30173 0.86128 0.78512 0.77191 0.84409 1.20580 1.21873 1.21921 0.92435 0.91490 0.92950 0.90875 0.90825 0.79448 0.84061 0.84494 0.84420 0.83866 0.90616 0.89510 0.95820 0.95659 0.78264 0.93539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.61 7.91 37.16 0.29 -1.32 16 2 C -0.10 -1.22 3.47 -88.78 -0.31 -1.53 16 3 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 4 C 0.12 1.42 4.98 -3.06 -0.02 1.41 16 5 N -0.59 -8.69 3.32 -171.34 -0.57 -9.26 16 6 C 0.58 8.94 7.85 -12.15 -0.10 8.85 16 7 O -0.52 -9.54 16.57 5.36 0.09 -9.45 16 8 C 0.07 0.89 6.73 -82.74 -0.56 0.33 16 9 C 0.13 1.56 10.75 -16.92 -0.18 1.38 16 10 N -0.43 -5.00 10.45 -10.53 -0.11 -5.11 16 11 C 0.09 0.96 6.59 -84.70 -0.56 0.40 16 12 C -0.09 -0.66 9.98 -39.49 -0.39 -1.05 16 13 C -0.09 -0.46 9.95 -39.89 -0.40 -0.86 16 14 C -0.10 -0.53 9.95 -39.93 -0.40 -0.92 16 15 C -0.07 -0.54 9.99 -39.41 -0.39 -0.93 16 16 C 0.07 0.77 6.60 -84.79 -0.56 0.21 16 17 N -0.39 -4.58 6.95 -7.39 -0.05 -4.63 16 18 C 0.11 1.89 6.01 -2.41 -0.01 1.88 16 19 C -0.10 -1.58 2.93 -88.35 -0.26 -1.84 16 20 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 21 C 0.17 3.17 4.54 -4.04 -0.02 3.15 16 22 N -0.73 -18.32 5.55 -59.91 -0.33 -18.65 16 23 C -0.24 -6.67 9.99 -15.06 -0.15 -6.82 16 24 H 0.07 1.91 7.83 -52.48 -0.41 1.49 16 25 C -0.01 -0.41 5.50 -17.43 -0.10 -0.50 16 26 N -0.93 -28.45 13.06 55.49 0.72 -27.72 16 27 Si 0.91 22.54 29.55 -169.99 -5.02 17.52 16 28 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 29 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 30 H -0.29 -7.30 7.11 56.52 0.40 -6.89 16 31 H 0.06 0.71 7.32 -51.93 -0.38 0.33 16 32 H 0.07 0.78 7.12 -51.93 -0.37 0.41 16 33 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.07 0.84 7.42 -51.93 -0.39 0.46 16 35 H 0.07 0.82 7.24 -51.93 -0.38 0.45 16 36 H 0.19 2.00 7.62 -52.49 -0.40 1.60 16 37 H 0.14 0.84 8.06 -52.49 -0.42 0.42 16 38 H 0.14 0.30 8.06 -52.49 -0.42 -0.12 16 39 H 0.14 0.31 8.06 -52.49 -0.42 -0.11 16 40 H 0.14 0.83 8.06 -52.48 -0.42 0.41 16 41 H 0.08 1.28 7.46 -51.93 -0.39 0.89 16 42 H 0.09 1.64 8.03 -51.93 -0.42 1.22 16 43 H 0.02 0.46 8.05 -51.93 -0.42 0.04 16 44 H 0.03 0.49 6.94 -51.93 -0.36 0.13 16 45 H 0.38 10.18 7.67 -40.82 -0.31 9.87 16 46 H 0.25 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 378.16 15.07 5.70 5.70 Total: -1.00 -33.69 378.16 -9.99 -43.68 By element: Atomic # 1 Polarization: 12.42 SS G_CDS: -6.31 Total: 6.11 kcal Atomic # 6 Polarization: 5.93 SS G_CDS: -4.10 Total: 1.83 kcal Atomic # 7 Polarization: -65.04 SS G_CDS: -0.34 Total: -65.38 kcal Atomic # 8 Polarization: -9.54 SS G_CDS: 0.09 Total: -9.45 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -5.02 Total: 17.52 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -33.69 -9.99 -43.68 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716985304.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.010 kcal (2) G-P(sol) polarization free energy of solvation -33.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.676 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds