Wall clock time and date at job start Sat Apr 11 2020 06:05:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 110.63890 * 2 1 4 4 C 1.54329 * 110.72278 * 236.86002 * 2 1 3 5 5 N 1.47023 * 107.26650 * 263.83053 * 4 2 1 6 6 C 1.34782 * 125.64317 * 181.02008 * 5 4 2 7 7 O 1.21506 * 119.99832 * 180.02562 * 6 5 4 8 8 C 1.48235 * 120.00031 * 0.02562 * 6 5 4 9 9 C 1.40572 * 119.74581 * 179.97438 * 8 6 5 10 10 N 1.31262 * 120.56908 * 180.02562 * 9 8 6 11 11 C 1.33784 * 119.80308 * 359.97438 * 10 9 8 12 12 C 1.40545 * 120.98699 * 180.02562 * 11 10 9 13 13 C 1.36079 * 119.74842 * 179.97438 * 12 11 10 14 14 C 1.39483 * 121.01483 * 0.02562 * 13 12 11 15 15 C 1.35986 * 120.98298 * 359.97438 * 14 13 12 16 16 C 1.40825 * 119.70163 * 359.97438 * 15 14 13 17 17 N 1.32163 * 119.74803 * 0.02562 * 8 6 5 18 18 C 1.47423 * 108.70485 * 1.28449 * 5 4 2 19 19 C 1.55132 * 104.72366 * 335.55288 * 18 5 4 20 20 H 1.08996 * 111.22817 * 279.17979 * 19 18 5 21 21 C 1.52993 * 110.90442 * 155.27321 * 19 18 5 22 22 N 1.46505 * 109.46818 * 72.97993 * 21 19 18 23 23 C 1.36938 * 119.99906 * 179.97438 * 22 21 19 24 24 H 1.08011 * 120.00053 * 359.97438 * 23 22 21 25 25 C 1.38803 * 120.00327 * 179.97438 * 23 22 21 26 26 N 1.31626 * 119.99943 * 0.02562 * 25 23 22 27 27 Si 1.86806 * 120.00364 * 179.97438 * 25 23 22 28 28 H 1.48500 * 109.46899 * 359.97438 * 27 25 23 29 29 H 1.48498 * 109.47131 * 119.99939 * 27 25 23 30 30 H 1.48504 * 109.46985 * 239.99792 * 27 25 23 31 31 H 1.09000 * 109.46917 * 181.68379 * 1 2 3 32 32 H 1.08999 * 109.47335 * 301.69092 * 1 2 3 33 33 H 1.09002 * 109.47402 * 61.68918 * 1 2 3 34 34 H 1.08999 * 109.88492 * 144.41112 * 4 2 1 35 35 H 1.09005 * 110.00867 * 23.31685 * 4 2 1 36 36 H 1.08001 * 119.71624 * 359.97438 * 9 8 6 37 37 H 1.07997 * 120.12629 * 0.02562 * 12 11 10 38 38 H 1.08001 * 119.48873 * 180.02562 * 13 12 11 39 39 H 1.07997 * 119.50383 * 180.02562 * 14 13 12 40 40 H 1.08004 * 120.14895 * 180.27904 * 15 14 13 41 41 H 1.08993 * 110.36624 * 94.48476 * 18 5 4 42 42 H 1.08998 * 110.36291 * 216.80548 * 18 5 4 43 43 H 1.09003 * 109.47156 * 192.97911 * 21 19 18 44 44 H 1.08995 * 109.47668 * 312.98005 * 21 19 18 45 45 H 0.96996 * 120.00152 * 359.97438 * 22 21 19 46 46 H 0.96992 * 120.00160 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0200 0.0000 4 6 2.0761 -0.7891 -1.2086 5 7 2.3716 -2.1519 -0.7426 6 6 2.8850 -3.1452 -1.4951 7 8 3.0888 -4.2372 -1.0027 8 6 3.2009 -2.9056 -2.9234 9 6 3.7367 -3.9453 -3.7032 10 7 4.0229 -3.7508 -4.9694 11 6 3.8030 -2.5536 -5.5245 12 6 4.0998 -2.3181 -6.8779 13 6 3.8655 -1.0907 -7.4168 14 6 3.3340 -0.0568 -6.6460 15 6 3.0338 -0.2455 -5.3332 16 6 3.2609 -1.5020 -4.7391 17 7 2.9777 -1.7158 -3.4538 18 6 2.0075 -2.2536 0.6823 19 6 2.0790 -0.7974 1.2125 20 1 3.1058 -0.5092 1.4370 21 6 1.1815 -0.6182 2.4385 22 7 1.7914 -1.2848 3.5917 23 6 1.1642 -1.2577 4.8088 24 1 0.2202 -0.7446 4.9186 25 6 1.7417 -1.8897 5.9014 26 7 2.8925 -2.5146 5.7677 27 14 0.8866 -1.8522 7.5618 28 1 -0.3824 -1.0894 7.4478 29 1 0.5926 -3.2407 7.9986 30 1 1.7702 -1.1962 8.5589 31 1 -0.3633 -1.0272 0.0302 32 1 -0.3634 0.5399 0.8744 33 1 -0.3634 0.4874 -0.9047 34 1 2.9869 -0.3179 -1.5781 35 1 1.3283 -0.8223 -2.0011 36 1 3.9152 -4.9122 -3.2564 37 1 4.5114 -3.1084 -7.4881 38 1 4.0947 -0.9144 -8.4574 39 1 3.1575 0.9076 -7.0988 40 1 2.6185 0.5631 -4.7500 41 1 0.9974 -2.6492 0.7884 42 1 2.7208 -2.8851 1.2119 43 1 1.0661 0.4445 2.6521 44 1 0.2037 -1.0571 2.2403 45 1 2.6393 -1.7453 3.4932 46 1 3.2958 -2.9566 6.5311 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716985304.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:36 Heat of formation + Delta-G solvation = 34.948379 kcal Electronic energy + Delta-G solvation = -28750.375765 eV Core-core repulsion = 24832.697558 eV Total energy + Delta-G solvation = -3917.678207 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.71068 -41.23466 -39.40155 -38.28051 -36.56766 -36.04786 -34.26012 -32.84849 -32.14813 -31.63763 -30.48021 -27.94785 -27.33993 -26.64520 -25.60691 -24.72097 -23.33207 -23.13738 -21.43196 -20.55084 -19.61651 -19.48874 -19.02894 -18.18184 -17.42322 -17.24516 -16.77914 -16.59100 -16.24282 -15.85843 -15.72943 -15.41511 -15.31594 -15.25930 -14.81883 -14.69148 -14.27031 -14.08810 -13.73931 -13.53372 -13.13616 -13.01023 -12.96538 -12.95940 -12.88478 -12.81329 -12.75443 -12.71670 -12.63735 -12.09475 -11.88574 -11.68154 -11.54900 -11.52795 -11.38196 -10.92349 -10.30025 -10.15712 -9.76790 -9.63756 -8.98310 -7.93766 -5.22807 -1.14646 -0.72102 0.73373 1.25800 1.47411 1.48631 1.58621 1.62471 1.99752 2.56128 2.61026 2.89633 2.94127 3.06262 3.31432 3.40676 3.54168 3.61615 3.68583 3.83629 3.93997 4.10330 4.14701 4.24294 4.24972 4.34095 4.36936 4.53885 4.58458 4.72800 4.76873 4.81620 4.83226 4.87359 4.95426 5.03768 5.05592 5.13906 5.15409 5.19599 5.26285 5.32661 5.34491 5.51597 5.51821 5.68046 5.92999 6.25924 6.28239 6.43622 6.80541 7.34091 8.10575 8.32105 9.30177 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.023798 B = 0.002277 C = 0.002123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1176.284149 B =12295.618424 C =13182.984623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.089 4.089 3 H 0.115 0.885 4 C 0.125 3.875 5 N -0.593 5.593 6 C 0.577 3.423 7 O -0.566 6.566 8 C 0.045 3.955 9 C 0.118 3.882 10 N -0.439 5.439 11 C 0.075 3.925 12 C -0.109 4.109 13 C -0.065 4.065 14 C -0.085 4.085 15 C -0.085 4.085 16 C 0.056 3.944 17 N -0.384 5.384 18 C 0.120 3.880 19 C -0.093 4.093 20 H 0.076 0.924 21 C 0.168 3.832 22 N -0.749 5.749 23 C -0.239 4.239 24 H 0.080 0.920 25 C -0.081 4.081 26 N -0.972 5.972 27 Si 0.974 3.026 28 H -0.262 1.262 29 H -0.297 1.297 30 H -0.294 1.294 31 H 0.041 0.959 32 H 0.063 0.937 33 H 0.080 0.920 34 H 0.082 0.918 35 H 0.087 0.913 36 H 0.187 0.813 37 H 0.152 0.848 38 H 0.178 0.822 39 H 0.179 0.821 40 H 0.160 0.840 41 H 0.068 0.932 42 H 0.050 0.950 43 H 0.035 0.965 44 H 0.030 0.970 45 H 0.371 0.629 46 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.671 9.760 -33.071 34.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.108 4.108 3 H 0.133 0.867 4 C 0.004 3.996 5 N -0.324 5.324 6 C 0.364 3.636 7 O -0.445 6.445 8 C -0.109 4.109 9 C -0.056 4.056 10 N -0.152 5.152 11 C -0.050 4.050 12 C -0.128 4.128 13 C -0.085 4.085 14 C -0.105 4.105 15 C -0.104 4.104 16 C -0.072 4.072 17 N -0.102 5.102 18 C -0.002 4.002 19 C -0.113 4.113 20 H 0.095 0.905 21 C 0.041 3.959 22 N -0.391 5.391 23 C -0.371 4.371 24 H 0.098 0.902 25 C -0.273 4.273 26 N -0.623 5.623 27 Si 0.803 3.197 28 H -0.187 1.187 29 H -0.224 1.224 30 H -0.221 1.221 31 H 0.060 0.940 32 H 0.082 0.918 33 H 0.099 0.901 34 H 0.100 0.900 35 H 0.106 0.894 36 H 0.204 0.796 37 H 0.170 0.830 38 H 0.195 0.805 39 H 0.196 0.804 40 H 0.178 0.822 41 H 0.086 0.914 42 H 0.069 0.931 43 H 0.053 0.947 44 H 0.048 0.952 45 H 0.203 0.797 46 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -0.697 9.290 -32.873 34.167 hybrid contribution 0.252 -1.065 1.680 2.005 sum -0.445 8.225 -31.192 32.262 Atomic orbital electron populations 1.21833 0.93252 1.01665 1.03121 1.22321 0.97229 0.99883 0.91355 0.86670 1.22372 1.01458 0.79364 0.96440 1.48446 1.59929 1.12877 1.11158 1.17651 0.77880 0.83358 0.84692 1.90803 1.55597 1.24911 1.73228 1.21973 1.01621 0.92328 0.95013 1.23936 0.92007 1.00293 0.89388 1.68849 1.14076 1.21540 1.10754 1.20346 0.97560 0.89824 0.97309 1.21111 1.00731 0.99920 0.91017 1.21653 0.93527 0.90963 1.02383 1.21588 0.94986 1.01339 0.92542 1.21220 0.98989 0.93837 0.96353 1.20153 1.00133 0.97169 0.89723 1.68705 1.10486 1.19532 1.11503 1.22254 0.99967 0.98399 0.79596 1.22490 1.00319 0.93357 0.95129 0.90511 1.20779 0.94544 0.95673 0.84876 1.42666 1.25343 1.64775 1.06321 1.19688 1.03010 1.26806 0.87600 0.90205 1.25612 0.98302 1.01404 1.01948 1.69842 1.19959 1.41673 1.30843 0.85062 0.78008 0.76831 0.79803 1.18650 1.22396 1.22115 0.93978 0.91772 0.90070 0.89990 0.89439 0.79628 0.83020 0.80510 0.80388 0.82201 0.91428 0.93104 0.94729 0.95211 0.79748 0.94156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.86 7.91 71.98 0.57 -2.29 16 2 C -0.09 -1.94 3.47 -9.60 -0.03 -1.98 16 3 H 0.12 2.02 8.14 -2.39 -0.02 2.00 16 4 C 0.13 2.82 4.98 86.73 0.43 3.26 16 5 N -0.59 -18.16 3.32 -814.30 -2.71 -20.86 16 6 C 0.58 19.14 7.85 86.90 0.68 19.82 16 7 O -0.57 -22.68 16.57 -3.74 -0.06 -22.74 16 8 C 0.05 1.24 6.73 42.32 0.28 1.52 16 9 C 0.12 3.06 10.75 85.35 0.92 3.98 16 10 N -0.44 -10.61 10.45 -187.22 -1.96 -12.57 16 11 C 0.08 1.51 6.59 40.34 0.27 1.78 16 12 C -0.11 -1.33 9.98 22.33 0.22 -1.10 16 13 C -0.07 -0.34 9.95 22.07 0.22 -0.12 16 14 C -0.08 -0.41 9.95 22.05 0.22 -0.19 16 15 C -0.08 -0.93 9.99 22.38 0.22 -0.71 16 16 C 0.06 1.08 6.60 40.48 0.27 1.35 16 17 N -0.38 -8.92 6.95 -177.29 -1.23 -10.15 16 18 C 0.12 4.21 6.01 86.93 0.52 4.74 16 19 C -0.09 -2.95 2.93 -9.33 -0.03 -2.97 16 20 H 0.08 2.59 8.14 -2.39 -0.02 2.57 16 21 C 0.17 6.41 4.54 86.38 0.39 6.80 16 22 N -0.75 -38.32 5.55 -343.45 -1.91 -40.22 16 23 C -0.24 -13.44 9.99 84.03 0.84 -12.60 16 24 H 0.08 4.25 7.83 -2.90 -0.02 4.23 16 25 C -0.08 -4.74 5.50 84.86 0.47 -4.27 16 26 N -0.97 -61.35 13.06 21.65 0.28 -61.07 16 27 Si 0.97 46.99 29.55 68.60 2.03 49.01 16 28 H -0.26 -11.72 7.11 99.48 0.71 -11.01 16 29 H -0.30 -14.43 7.11 99.48 0.71 -13.72 16 30 H -0.29 -14.15 7.11 99.48 0.71 -13.45 16 31 H 0.04 0.98 7.32 -2.39 -0.02 0.96 16 32 H 0.06 1.35 7.12 -2.39 -0.02 1.33 16 33 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 34 H 0.08 1.74 7.42 -2.39 -0.02 1.73 16 35 H 0.09 1.78 7.24 -2.38 -0.02 1.76 16 36 H 0.19 4.57 7.62 -2.91 -0.02 4.55 16 37 H 0.15 1.47 8.06 -2.91 -0.02 1.44 16 38 H 0.18 -0.41 8.06 -2.91 -0.02 -0.43 16 39 H 0.18 -0.47 8.06 -2.91 -0.02 -0.49 16 40 H 0.16 1.18 8.06 -2.91 -0.02 1.16 16 41 H 0.07 2.44 7.46 -2.39 -0.02 2.42 16 42 H 0.05 2.12 8.03 -2.39 -0.02 2.10 16 43 H 0.03 1.28 8.05 -2.39 -0.02 1.26 16 44 H 0.03 1.14 6.94 -2.39 -0.02 1.12 16 45 H 0.37 20.65 7.67 -92.71 -0.71 19.94 16 46 H 0.25 15.28 8.31 -92.71 -0.77 14.51 16 Total: -1.00 -77.65 378.16 1.21 -76.44 By element: Atomic # 1 Polarization: 24.86 SS G_CDS: 0.30 Total: 25.16 kcal Atomic # 6 Polarization: 10.54 SS G_CDS: 6.46 Total: 17.00 kcal Atomic # 7 Polarization: -137.36 SS G_CDS: -7.52 Total: -144.88 kcal Atomic # 8 Polarization: -22.68 SS G_CDS: -0.06 Total: -22.74 kcal Atomic # 14 Polarization: 46.99 SS G_CDS: 2.03 Total: 49.01 kcal Total: -77.65 1.21 -76.44 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716985304.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.388 kcal (2) G-P(sol) polarization free energy of solvation -77.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.440 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds