Wall clock time and date at job start Sat Apr 11 2020 06:05:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 110.91376 * 2 1 4 4 C 1.55126 * 110.93706 * 124.06069 * 2 1 3 5 5 N 1.47420 * 104.94474 * 81.21415 * 4 2 1 6 6 C 1.34767 * 125.65053 * 203.96805 * 5 4 2 7 7 O 1.21506 * 120.00699 * 180.02562 * 6 5 4 8 8 C 1.48234 * 120.00090 * 0.03963 * 6 5 4 9 9 C 1.40577 * 119.75130 * 179.97438 * 8 6 5 10 10 N 1.31261 * 120.57261 * 180.02562 * 9 8 6 11 11 C 1.33783 * 119.80635 * 0.02562 * 10 9 8 12 12 C 1.40539 * 120.99963 * 180.02562 * 11 10 9 13 13 C 1.36079 * 119.75377 * 179.97438 * 12 11 10 14 14 C 1.39476 * 121.01732 * 359.95553 * 13 12 11 15 15 C 1.35987 * 120.97906 * 0.04849 * 14 13 12 16 16 C 1.40817 * 119.70616 * 359.97218 * 15 14 13 17 17 N 1.32169 * 119.74786 * 359.73123 * 8 6 5 18 18 C 1.47020 * 108.70288 * 24.00408 * 5 4 2 19 19 C 1.54325 * 107.27137 * 358.94004 * 18 5 4 20 20 H 1.09004 * 110.72145 * 96.34593 * 19 18 5 21 21 C 1.53004 * 110.71948 * 219.44289 * 19 18 5 22 22 N 1.46499 * 109.47198 * 291.15745 * 21 19 18 23 23 C 1.36939 * 119.99933 * 180.27608 * 22 21 19 24 24 H 1.08001 * 119.99700 * 359.72658 * 23 22 21 25 25 C 1.38810 * 120.00095 * 179.71972 * 23 22 21 26 26 N 1.31624 * 119.99740 * 0.02562 * 25 23 22 27 27 Si 1.86796 * 120.00044 * 179.97438 * 25 23 22 28 28 H 1.48501 * 109.47173 * 60.00435 * 27 25 23 29 29 H 1.48497 * 109.47172 * 180.02562 * 27 25 23 30 30 H 1.48506 * 109.47132 * 300.00314 * 27 25 23 31 31 H 1.09000 * 109.46804 * 183.90144 * 1 2 3 32 32 H 1.09000 * 109.47090 * 303.89536 * 1 2 3 33 33 H 1.08993 * 109.47257 * 63.90198 * 1 2 3 34 34 H 1.09002 * 110.41616 * 322.28325 * 4 2 1 35 35 H 1.09002 * 110.29818 * 200.08714 * 4 2 1 36 36 H 1.07993 * 119.71304 * 359.97438 * 9 8 6 37 37 H 1.07999 * 120.12012 * 359.95806 * 12 11 10 38 38 H 1.08009 * 119.48721 * 179.97438 * 13 12 11 39 39 H 1.07997 * 119.51168 * 180.02562 * 14 13 12 40 40 H 1.08006 * 120.14760 * 179.97438 * 15 14 13 41 41 H 1.08997 * 109.88257 * 239.52151 * 18 5 4 42 42 H 1.09003 * 109.88420 * 118.35698 * 18 5 4 43 43 H 1.09009 * 109.46730 * 171.15533 * 21 19 18 44 44 H 1.08998 * 109.46846 * 51.16077 * 21 19 18 45 45 H 0.97001 * 119.99790 * 359.97438 * 22 21 19 46 46 H 0.96998 * 119.99409 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9191 1.0182 0.0000 4 6 2.0843 -0.8115 1.2003 5 7 2.0170 -2.2200 0.7705 6 6 1.9528 -3.2888 1.5889 7 8 1.9011 -4.4094 1.1221 8 6 1.9449 -3.0973 3.0588 9 6 1.8773 -4.2158 3.9077 10 7 1.8688 -4.0648 5.2116 11 6 1.9244 -2.8367 5.7392 12 6 1.9174 -2.6461 7.1316 13 6 1.9754 -1.3856 7.6410 14 6 2.0430 -0.2737 6.8017 15 6 2.0519 -0.4169 5.4494 16 6 1.9927 -1.7051 4.8837 17 7 2.0064 -1.8764 3.5615 18 6 2.0323 -2.2658 -0.6989 19 6 2.0861 -0.8079 -1.2022 20 1 3.1123 -0.5137 -1.4229 21 6 1.1965 -0.6272 -2.4338 22 7 1.7785 -1.3506 -3.5670 23 6 1.1555 -1.3284 -4.7863 24 1 0.2328 -0.7813 -4.9113 25 6 1.7100 -2.0090 -5.8616 26 7 2.8344 -2.6761 -5.7090 27 14 0.8598 -1.9793 -7.5245 28 1 0.7561 -0.5772 -8.0025 29 1 1.6479 -2.7775 -8.4977 30 1 -0.5008 -2.5602 -7.3953 31 1 -0.3633 -1.0253 0.0699 32 1 -0.3633 0.5731 0.8530 33 1 -0.3633 0.4520 -0.9228 34 1 1.4655 -0.6544 2.0837 35 1 3.1162 -0.5262 1.4053 36 1 1.8311 -5.2078 3.4833 37 1 1.8659 -3.4969 7.7948 38 1 1.9694 -1.2441 8.7117 39 1 2.0886 0.7158 7.2321 40 1 2.1041 0.4535 4.8121 41 1 1.1272 -2.7509 -1.0642 42 1 2.9118 -2.8097 -1.0437 43 1 1.1245 0.4328 -2.6776 44 1 0.2017 -1.0201 -2.2242 45 1 2.6075 -1.8416 -3.4548 46 1 3.2216 -3.1520 -6.4603 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716985305.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:39 Heat of formation + Delta-G solvation = 59.892959 kcal Electronic energy + Delta-G solvation = -28840.007911 eV Core-core repulsion = 24923.411382 eV Total energy + Delta-G solvation = -3916.596529 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.92887 -40.10388 -38.29406 -37.49087 -35.42590 -34.58245 -32.77107 -31.38471 -31.11963 -31.05338 -29.00417 -26.91736 -26.24264 -25.49489 -24.55556 -23.12330 -22.71692 -21.70272 -20.44472 -19.22220 -18.74372 -18.72049 -17.44481 -16.85198 -16.40854 -16.18810 -15.77219 -15.45762 -15.18370 -14.82618 -14.78818 -14.36335 -14.17022 -13.85479 -13.56069 -13.22921 -13.08722 -12.70696 -12.52055 -12.40050 -12.34248 -12.25488 -12.23678 -12.04660 -11.81004 -11.71677 -11.55603 -10.98654 -10.80562 -10.52416 -10.45143 -10.33965 -10.29067 -9.95660 -9.65056 -9.43436 -9.37411 -9.07812 -8.84853 -8.53978 -6.90234 -5.73647 -3.02733 -0.40118 -0.00184 1.40146 2.07474 2.75530 2.90085 3.46310 3.47339 3.50609 3.51784 3.63270 3.66396 3.80130 4.23919 4.35336 4.46620 4.57721 4.63606 4.64973 4.76187 4.82260 4.92471 5.04186 5.32667 5.37499 5.38611 5.51634 5.56960 5.59250 5.62835 5.67855 5.74120 5.82736 5.90901 5.93766 6.03526 6.06758 6.15285 6.20262 6.28178 6.37760 6.40803 6.47405 6.70955 6.71820 6.85690 7.19834 7.47514 7.71605 8.00513 8.44878 9.55945 10.13099 10.47405 11.49042 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.024907 B = 0.002286 C = 0.002148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1123.925351 B =12245.377227 C =13033.199302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.102 4.102 3 H 0.091 0.909 4 C 0.105 3.895 5 N -0.589 5.589 6 C 0.579 3.421 7 O -0.525 6.525 8 C 0.070 3.930 9 C 0.130 3.870 10 N -0.426 5.426 11 C 0.091 3.909 12 C -0.088 4.088 13 C -0.091 4.091 14 C -0.102 4.102 15 C -0.075 4.075 16 C 0.073 3.927 17 N -0.388 5.388 18 C 0.116 3.884 19 C -0.101 4.101 20 H 0.086 0.914 21 C 0.164 3.836 22 N -0.733 5.733 23 C -0.240 4.240 24 H 0.069 0.931 25 C -0.013 4.013 26 N -0.932 5.932 27 Si 0.907 3.093 28 H -0.286 1.286 29 H -0.291 1.291 30 H -0.286 1.286 31 H 0.054 0.946 32 H 0.050 0.950 33 H 0.067 0.933 34 H 0.100 0.900 35 H 0.067 0.933 36 H 0.189 0.811 37 H 0.142 0.858 38 H 0.137 0.863 39 H 0.138 0.862 40 H 0.144 0.856 41 H 0.079 0.921 42 H 0.074 0.926 43 H 0.023 0.977 44 H 0.026 0.974 45 H 0.384 0.616 46 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.283 6.471 29.841 30.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.121 4.121 3 H 0.109 0.891 4 C -0.018 4.018 5 N -0.321 5.321 6 C 0.364 3.636 7 O -0.400 6.400 8 C -0.086 4.086 9 C -0.046 4.046 10 N -0.139 5.139 11 C -0.034 4.034 12 C -0.107 4.107 13 C -0.111 4.111 14 C -0.122 4.122 15 C -0.094 4.094 16 C -0.053 4.053 17 N -0.106 5.106 18 C -0.006 4.006 19 C -0.121 4.121 20 H 0.104 0.896 21 C 0.036 3.964 22 N -0.378 5.378 23 C -0.372 4.372 24 H 0.087 0.913 25 C -0.210 4.210 26 N -0.581 5.581 27 Si 0.738 3.262 28 H -0.213 1.213 29 H -0.217 1.217 30 H -0.213 1.213 31 H 0.074 0.926 32 H 0.069 0.931 33 H 0.086 0.914 34 H 0.118 0.882 35 H 0.086 0.914 36 H 0.206 0.794 37 H 0.159 0.841 38 H 0.155 0.845 39 H 0.156 0.844 40 H 0.162 0.838 41 H 0.098 0.902 42 H 0.092 0.908 43 H 0.041 0.959 44 H 0.043 0.957 45 H 0.217 0.783 46 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -1.414 5.920 29.625 30.244 hybrid contribution -0.059 -0.172 -0.984 1.001 sum -1.474 5.748 28.641 29.249 Atomic orbital electron populations 1.21766 0.94245 1.02029 1.01877 1.22453 0.96576 0.99066 0.94026 0.89110 1.22793 1.01559 0.79370 0.98086 1.48365 1.69460 1.06545 1.07712 1.17223 0.78560 0.84109 0.83707 1.90847 1.50713 1.22888 1.75599 1.22509 0.99355 0.90452 0.96283 1.24008 0.91424 1.00703 0.88424 1.68851 1.09444 1.22891 1.12700 1.19827 0.98478 0.89451 0.95650 1.20838 0.99376 0.98419 0.92111 1.21110 0.97134 0.91958 1.00873 1.21055 0.98378 0.99718 0.93091 1.20908 0.98053 0.95064 0.95364 1.19714 1.00959 0.95135 0.89480 1.68853 1.06580 1.23053 1.12119 1.22159 1.03416 0.98031 0.76946 1.22501 1.01248 0.93013 0.95303 0.89594 1.20711 0.94402 0.95542 0.85725 1.42380 1.28632 1.60448 1.06311 1.19156 1.04697 1.26244 0.87070 0.91260 1.24746 0.97577 1.00437 0.98191 1.69650 1.20126 1.37289 1.31012 0.86268 0.78584 0.77320 0.83998 1.21312 1.21713 1.21277 0.92641 0.93059 0.91402 0.88195 0.91430 0.79444 0.84061 0.84491 0.84410 0.83850 0.90228 0.90766 0.95880 0.95656 0.78276 0.93450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.69 8.16 37.16 0.30 -1.39 16 2 C -0.10 -1.22 3.56 -88.36 -0.31 -1.54 16 3 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 4 C 0.10 1.24 5.40 -2.41 -0.01 1.23 16 5 N -0.59 -8.68 3.32 -171.35 -0.57 -9.25 16 6 C 0.58 8.93 7.84 -12.16 -0.10 8.83 16 7 O -0.52 -9.59 16.65 5.36 0.09 -9.50 16 8 C 0.07 0.91 6.73 -82.73 -0.56 0.35 16 9 C 0.13 1.54 10.75 -16.91 -0.18 1.36 16 10 N -0.43 -4.95 10.45 -10.53 -0.11 -5.06 16 11 C 0.09 0.94 6.60 -84.70 -0.56 0.39 16 12 C -0.09 -0.65 9.98 -39.49 -0.39 -1.04 16 13 C -0.09 -0.45 9.95 -39.90 -0.40 -0.85 16 14 C -0.10 -0.51 9.95 -39.93 -0.40 -0.91 16 15 C -0.07 -0.53 9.99 -39.41 -0.39 -0.93 16 16 C 0.07 0.75 6.60 -84.79 -0.56 0.19 16 17 N -0.39 -4.52 6.70 -7.38 -0.05 -4.57 16 18 C 0.12 1.94 5.96 -3.06 -0.02 1.92 16 19 C -0.10 -1.58 2.84 -88.78 -0.25 -1.83 16 20 H 0.09 1.36 8.14 -51.93 -0.42 0.93 16 21 C 0.16 3.17 4.43 -4.04 -0.02 3.15 16 22 N -0.73 -18.37 5.48 -59.90 -0.33 -18.69 16 23 C -0.24 -6.73 9.99 -15.06 -0.15 -6.88 16 24 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 25 C -0.01 -0.39 5.50 -17.43 -0.10 -0.48 16 26 N -0.93 -28.44 13.06 55.49 0.72 -27.72 16 27 Si 0.91 22.61 29.55 -169.99 -5.02 17.59 16 28 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 29 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 30 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 31 H 0.05 0.74 7.92 -51.93 -0.41 0.33 16 32 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.07 0.85 6.79 -51.93 -0.35 0.49 16 34 H 0.10 1.11 5.81 -51.93 -0.30 0.81 16 35 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.19 1.99 7.62 -52.49 -0.40 1.59 16 37 H 0.14 0.83 8.06 -52.49 -0.42 0.41 16 38 H 0.14 0.29 8.06 -52.48 -0.42 -0.14 16 39 H 0.14 0.30 8.06 -52.49 -0.42 -0.12 16 40 H 0.14 0.80 8.06 -52.48 -0.42 0.38 16 41 H 0.08 1.50 7.73 -51.93 -0.40 1.10 16 42 H 0.07 1.35 8.14 -51.93 -0.42 0.92 16 43 H 0.02 0.45 8.12 -51.92 -0.42 0.03 16 44 H 0.03 0.50 6.79 -51.93 -0.35 0.15 16 45 H 0.38 10.14 7.60 -40.82 -0.31 9.83 16 46 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 378.21 15.07 5.70 5.70 Total: -1.00 -33.74 378.21 -9.96 -43.70 By element: Atomic # 1 Polarization: 12.53 SS G_CDS: -6.30 Total: 6.23 kcal Atomic # 6 Polarization: 5.67 SS G_CDS: -4.09 Total: 1.58 kcal Atomic # 7 Polarization: -64.96 SS G_CDS: -0.33 Total: -65.29 kcal Atomic # 8 Polarization: -9.59 SS G_CDS: 0.09 Total: -9.50 kcal Atomic # 14 Polarization: 22.61 SS G_CDS: -5.02 Total: 17.59 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -33.74 -9.96 -43.70 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716985305.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.596 kcal (2) G-P(sol) polarization free energy of solvation -33.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.703 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds