Wall clock time and date at job start Sat Apr 11 2020 06:05:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 110.91376 * 2 1 4 4 C 1.55126 * 110.93706 * 124.06069 * 2 1 3 5 5 N 1.47420 * 104.94474 * 81.21415 * 4 2 1 6 6 C 1.34767 * 125.65053 * 203.96805 * 5 4 2 7 7 O 1.21506 * 120.00699 * 180.02562 * 6 5 4 8 8 C 1.48234 * 120.00090 * 0.03963 * 6 5 4 9 9 C 1.40577 * 119.75130 * 179.97438 * 8 6 5 10 10 N 1.31261 * 120.57261 * 180.02562 * 9 8 6 11 11 C 1.33783 * 119.80635 * 0.02562 * 10 9 8 12 12 C 1.40539 * 120.99963 * 180.02562 * 11 10 9 13 13 C 1.36079 * 119.75377 * 179.97438 * 12 11 10 14 14 C 1.39476 * 121.01732 * 359.95553 * 13 12 11 15 15 C 1.35987 * 120.97906 * 0.04849 * 14 13 12 16 16 C 1.40817 * 119.70616 * 359.97218 * 15 14 13 17 17 N 1.32169 * 119.74786 * 359.73123 * 8 6 5 18 18 C 1.47020 * 108.70288 * 24.00408 * 5 4 2 19 19 C 1.54325 * 107.27137 * 358.94004 * 18 5 4 20 20 H 1.09004 * 110.72145 * 96.34593 * 19 18 5 21 21 C 1.53004 * 110.71948 * 219.44289 * 19 18 5 22 22 N 1.46499 * 109.47198 * 291.15745 * 21 19 18 23 23 C 1.36939 * 119.99933 * 180.27608 * 22 21 19 24 24 H 1.08001 * 119.99700 * 359.72658 * 23 22 21 25 25 C 1.38810 * 120.00095 * 179.71972 * 23 22 21 26 26 N 1.31624 * 119.99740 * 0.02562 * 25 23 22 27 27 Si 1.86796 * 120.00044 * 179.97438 * 25 23 22 28 28 H 1.48501 * 109.47173 * 60.00435 * 27 25 23 29 29 H 1.48497 * 109.47172 * 180.02562 * 27 25 23 30 30 H 1.48506 * 109.47132 * 300.00314 * 27 25 23 31 31 H 1.09000 * 109.46804 * 183.90144 * 1 2 3 32 32 H 1.09000 * 109.47090 * 303.89536 * 1 2 3 33 33 H 1.08993 * 109.47257 * 63.90198 * 1 2 3 34 34 H 1.09002 * 110.41616 * 322.28325 * 4 2 1 35 35 H 1.09002 * 110.29818 * 200.08714 * 4 2 1 36 36 H 1.07993 * 119.71304 * 359.97438 * 9 8 6 37 37 H 1.07999 * 120.12012 * 359.95806 * 12 11 10 38 38 H 1.08009 * 119.48721 * 179.97438 * 13 12 11 39 39 H 1.07997 * 119.51168 * 180.02562 * 14 13 12 40 40 H 1.08006 * 120.14760 * 179.97438 * 15 14 13 41 41 H 1.08997 * 109.88257 * 239.52151 * 18 5 4 42 42 H 1.09003 * 109.88420 * 118.35698 * 18 5 4 43 43 H 1.09009 * 109.46730 * 171.15533 * 21 19 18 44 44 H 1.08998 * 109.46846 * 51.16077 * 21 19 18 45 45 H 0.97001 * 119.99790 * 359.97438 * 22 21 19 46 46 H 0.96998 * 119.99409 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9191 1.0182 0.0000 4 6 2.0843 -0.8115 1.2003 5 7 2.0170 -2.2200 0.7705 6 6 1.9528 -3.2888 1.5889 7 8 1.9011 -4.4094 1.1221 8 6 1.9449 -3.0973 3.0588 9 6 1.8773 -4.2158 3.9077 10 7 1.8688 -4.0648 5.2116 11 6 1.9244 -2.8367 5.7392 12 6 1.9174 -2.6461 7.1316 13 6 1.9754 -1.3856 7.6410 14 6 2.0430 -0.2737 6.8017 15 6 2.0519 -0.4169 5.4494 16 6 1.9927 -1.7051 4.8837 17 7 2.0064 -1.8764 3.5615 18 6 2.0323 -2.2658 -0.6989 19 6 2.0861 -0.8079 -1.2022 20 1 3.1123 -0.5137 -1.4229 21 6 1.1965 -0.6272 -2.4338 22 7 1.7785 -1.3506 -3.5670 23 6 1.1555 -1.3284 -4.7863 24 1 0.2328 -0.7813 -4.9113 25 6 1.7100 -2.0090 -5.8616 26 7 2.8344 -2.6761 -5.7090 27 14 0.8598 -1.9793 -7.5245 28 1 0.7561 -0.5772 -8.0025 29 1 1.6479 -2.7775 -8.4977 30 1 -0.5008 -2.5602 -7.3953 31 1 -0.3633 -1.0253 0.0699 32 1 -0.3633 0.5731 0.8530 33 1 -0.3633 0.4520 -0.9228 34 1 1.4655 -0.6544 2.0837 35 1 3.1162 -0.5262 1.4053 36 1 1.8311 -5.2078 3.4833 37 1 1.8659 -3.4969 7.7948 38 1 1.9694 -1.2441 8.7117 39 1 2.0886 0.7158 7.2321 40 1 2.1041 0.4535 4.8121 41 1 1.1272 -2.7509 -1.0642 42 1 2.9118 -2.8097 -1.0437 43 1 1.1245 0.4328 -2.6776 44 1 0.2017 -1.0201 -2.2242 45 1 2.6075 -1.8416 -3.4548 46 1 3.2216 -3.1520 -6.4603 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716985305.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:39 Heat of formation + Delta-G solvation = 37.506004 kcal Electronic energy + Delta-G solvation = -28840.978682 eV Core-core repulsion = 24923.411382 eV Total energy + Delta-G solvation = -3917.567300 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.72141 -41.23843 -39.39490 -38.27972 -36.57594 -36.04787 -34.21840 -32.82383 -32.15127 -31.63827 -30.49865 -28.03002 -27.34692 -26.66463 -25.60770 -24.71688 -23.33866 -23.08064 -21.43226 -20.53910 -19.61597 -19.48848 -19.03893 -18.17549 -17.47123 -17.28117 -16.75531 -16.60674 -16.31239 -15.86182 -15.64593 -15.40423 -15.31686 -15.27699 -14.80137 -14.67633 -14.35672 -14.01101 -13.79284 -13.60486 -13.11136 -13.00972 -12.96896 -12.91985 -12.88900 -12.81962 -12.71255 -12.66121 -12.64462 -12.20818 -11.89632 -11.69414 -11.55699 -11.51291 -11.36447 -10.91336 -10.26659 -10.15094 -9.75324 -9.63155 -8.98722 -7.94051 -5.22953 -1.15024 -0.71933 0.73335 1.26257 1.46724 1.50307 1.56241 1.62671 2.00046 2.56130 2.61018 2.89711 2.94119 3.06376 3.33831 3.40260 3.50657 3.62496 3.68913 3.80950 3.93950 4.10979 4.16542 4.24921 4.25153 4.34584 4.37619 4.51945 4.61508 4.72931 4.78302 4.79583 4.85931 4.87700 4.95621 5.02052 5.04012 5.15346 5.16480 5.21308 5.24180 5.30425 5.35074 5.49476 5.50361 5.68512 5.92375 6.26615 6.27899 6.43680 6.81152 7.33952 8.10307 8.32350 9.29375 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.024907 B = 0.002286 C = 0.002148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1123.925351 B =12245.377227 C =13033.199302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.088 4.088 3 H 0.123 0.877 4 C 0.109 3.891 5 N -0.590 5.590 6 C 0.576 3.424 7 O -0.568 6.568 8 C 0.047 3.953 9 C 0.117 3.883 10 N -0.438 5.438 11 C 0.075 3.925 12 C -0.109 4.109 13 C -0.065 4.065 14 C -0.084 4.084 15 C -0.085 4.085 16 C 0.056 3.944 17 N -0.384 5.384 18 C 0.123 3.877 19 C -0.092 4.092 20 H 0.087 0.913 21 C 0.166 3.834 22 N -0.747 5.747 23 C -0.244 4.244 24 H 0.077 0.923 25 C -0.079 4.079 26 N -0.970 5.970 27 Si 0.974 3.026 28 H -0.274 1.274 29 H -0.297 1.297 30 H -0.280 1.280 31 H 0.031 0.969 32 H 0.079 0.921 33 H 0.062 0.938 34 H 0.114 0.886 35 H 0.081 0.919 36 H 0.186 0.814 37 H 0.152 0.848 38 H 0.177 0.823 39 H 0.179 0.821 40 H 0.161 0.839 41 H 0.050 0.950 42 H 0.050 0.950 43 H 0.035 0.965 44 H 0.023 0.977 45 H 0.372 0.628 46 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.916 10.083 33.261 34.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.107 4.107 3 H 0.141 0.859 4 C -0.012 4.012 5 N -0.321 5.321 6 C 0.363 3.637 7 O -0.447 6.447 8 C -0.107 4.107 9 C -0.057 4.057 10 N -0.151 5.151 11 C -0.050 4.050 12 C -0.128 4.128 13 C -0.085 4.085 14 C -0.104 4.104 15 C -0.104 4.104 16 C -0.071 4.071 17 N -0.102 5.102 18 C 0.000 4.000 19 C -0.112 4.112 20 H 0.105 0.895 21 C 0.039 3.961 22 N -0.390 5.390 23 C -0.375 4.375 24 H 0.095 0.905 25 C -0.271 4.271 26 N -0.621 5.621 27 Si 0.803 3.197 28 H -0.200 1.200 29 H -0.223 1.223 30 H -0.206 1.206 31 H 0.051 0.949 32 H 0.098 0.902 33 H 0.081 0.919 34 H 0.131 0.869 35 H 0.099 0.901 36 H 0.203 0.797 37 H 0.170 0.830 38 H 0.195 0.805 39 H 0.196 0.804 40 H 0.179 0.821 41 H 0.068 0.932 42 H 0.068 0.932 43 H 0.053 0.947 44 H 0.041 0.959 45 H 0.204 0.796 46 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -2.080 9.572 33.061 34.482 hybrid contribution 0.109 -1.146 -1.726 2.075 sum -1.970 8.426 31.335 32.508 Atomic orbital electron populations 1.21753 0.94019 1.01047 1.02891 1.22504 0.96652 0.99997 0.91592 0.85874 1.22961 1.02652 0.77305 0.98329 1.48421 1.69151 1.07897 1.06604 1.17657 0.77485 0.83567 0.84961 1.90801 1.52652 1.24510 1.76709 1.21965 1.02755 0.91521 0.94453 1.23924 0.92474 1.00519 0.88743 1.68847 1.09944 1.24125 1.12218 1.20343 0.98419 0.89043 0.97229 1.21108 1.00648 1.00271 0.90746 1.21652 0.93192 0.90713 1.02981 1.21589 0.95168 1.01576 0.92076 1.21226 0.98379 0.94030 0.96782 1.20179 1.01536 0.96633 0.88788 1.68708 1.06053 1.22167 1.13287 1.21876 1.00795 0.98603 0.78702 1.22363 1.00813 0.92793 0.95206 0.89458 1.20843 0.94651 0.95104 0.85454 1.42624 1.28301 1.60909 1.07168 1.19601 1.04664 1.25130 0.88153 0.90470 1.25600 0.98570 1.00914 1.01989 1.69822 1.21873 1.38759 1.31674 0.85202 0.77433 0.77624 0.79448 1.20009 1.22335 1.20608 0.94929 0.90192 0.91926 0.86862 0.90123 0.79663 0.83041 0.80533 0.80383 0.82107 0.93176 0.93198 0.94714 0.95913 0.79603 0.94092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.10 8.16 71.98 0.59 -2.51 16 2 C -0.09 -1.95 3.56 -9.33 -0.03 -1.98 16 3 H 0.12 2.04 8.14 -2.39 -0.02 2.02 16 4 C 0.11 2.44 5.40 86.93 0.47 2.91 16 5 N -0.59 -18.16 3.32 -814.34 -2.70 -20.86 16 6 C 0.58 19.14 7.84 86.90 0.68 19.82 16 7 O -0.57 -22.85 16.65 -3.74 -0.06 -22.92 16 8 C 0.05 1.29 6.73 42.32 0.28 1.57 16 9 C 0.12 3.02 10.75 85.35 0.92 3.94 16 10 N -0.44 -10.47 10.45 -187.21 -1.96 -12.43 16 11 C 0.08 1.49 6.60 40.35 0.27 1.75 16 12 C -0.11 -1.30 9.98 22.33 0.22 -1.07 16 13 C -0.07 -0.32 9.95 22.07 0.22 -0.10 16 14 C -0.08 -0.38 9.95 22.04 0.22 -0.16 16 15 C -0.09 -0.89 9.99 22.38 0.22 -0.67 16 16 C 0.06 1.06 6.60 40.48 0.27 1.33 16 17 N -0.38 -8.75 6.70 -177.28 -1.19 -9.94 16 18 C 0.12 4.41 5.96 86.73 0.52 4.92 16 19 C -0.09 -2.89 2.84 -9.60 -0.03 -2.92 16 20 H 0.09 2.75 8.14 -2.38 -0.02 2.73 16 21 C 0.17 6.46 4.43 86.38 0.38 6.84 16 22 N -0.75 -38.46 5.48 -343.44 -1.88 -40.34 16 23 C -0.24 -13.82 9.99 84.03 0.84 -12.98 16 24 H 0.08 4.16 7.83 -2.91 -0.02 4.14 16 25 C -0.08 -4.63 5.50 84.86 0.47 -4.16 16 26 N -0.97 -61.06 13.06 21.65 0.28 -60.78 16 27 Si 0.97 47.14 29.55 68.60 2.03 49.16 16 28 H -0.27 -12.60 7.11 99.48 0.71 -11.90 16 29 H -0.30 -14.53 7.11 99.48 0.71 -13.82 16 30 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 31 H 0.03 0.86 7.92 -2.39 -0.02 0.84 16 32 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 33 H 0.06 1.46 6.79 -2.39 -0.02 1.44 16 34 H 0.11 2.30 5.81 -2.39 -0.01 2.29 16 35 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 36 H 0.19 4.54 7.62 -2.91 -0.02 4.52 16 37 H 0.15 1.43 8.06 -2.91 -0.02 1.41 16 38 H 0.18 -0.45 8.06 -2.91 -0.02 -0.47 16 39 H 0.18 -0.52 8.06 -2.91 -0.02 -0.55 16 40 H 0.16 1.09 8.06 -2.91 -0.02 1.07 16 41 H 0.05 2.06 7.73 -2.39 -0.02 2.05 16 42 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 43 H 0.04 1.30 8.12 -2.38 -0.02 1.28 16 44 H 0.02 0.92 6.79 -2.39 -0.02 0.90 16 45 H 0.37 20.59 7.60 -92.71 -0.70 19.88 16 46 H 0.25 15.33 8.31 -92.71 -0.77 14.56 16 Total: -1.00 -78.01 378.21 1.33 -76.68 By element: Atomic # 1 Polarization: 24.58 SS G_CDS: 0.31 Total: 24.89 kcal Atomic # 6 Polarization: 10.03 SS G_CDS: 6.51 Total: 16.54 kcal Atomic # 7 Polarization: -136.91 SS G_CDS: -7.44 Total: -144.35 kcal Atomic # 8 Polarization: -22.85 SS G_CDS: -0.06 Total: -22.92 kcal Atomic # 14 Polarization: 47.14 SS G_CDS: 2.03 Total: 49.16 kcal Total: -78.01 1.33 -76.68 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716985305.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.185 kcal (2) G-P(sol) polarization free energy of solvation -78.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.679 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds