Wall clock time and date at job start Sat Apr 11 2020 06:05:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 110.31070 * 2 1 4 4 C 1.54395 * 110.34257 * 122.28651 * 2 1 3 5 5 N 1.48427 * 104.65420 * 142.73646 * 4 2 1 6 6 C 1.34781 * 127.98028 * 140.36956 * 5 4 2 7 7 O 1.21511 * 119.99898 * 180.08928 * 6 5 4 8 8 C 1.48233 * 120.00085 * 0.09259 * 6 5 4 9 9 C 1.40570 * 119.74824 * 179.72617 * 8 6 5 10 10 N 1.31261 * 120.56969 * 179.76484 * 9 8 6 11 11 C 1.33784 * 119.80529 * 0.48380 * 10 9 8 12 12 C 1.40542 * 120.99790 * 179.72758 * 11 10 9 13 13 C 1.36078 * 119.75296 * 180.02562 * 12 11 10 14 14 C 1.39477 * 121.01242 * 359.97438 * 13 12 11 15 15 C 1.35988 * 120.98607 * 0.02562 * 14 13 12 16 16 C 1.40814 * 119.69950 * 359.97438 * 15 14 13 17 17 N 1.32169 * 119.74441 * 359.97438 * 8 6 5 18 18 C 1.48146 * 104.18376 * 320.44270 * 5 4 2 19 19 C 1.54289 * 110.34289 * 237.81998 * 2 1 3 20 20 H 1.08998 * 110.43086 * 0.05057 * 19 2 1 21 21 C 1.52998 * 110.34096 * 122.26350 * 19 2 1 22 22 N 1.46497 * 109.47193 * 181.99223 * 21 19 2 23 23 C 1.36933 * 120.00260 * 179.97438 * 22 21 19 24 24 H 1.08004 * 119.99857 * 359.97438 * 23 22 21 25 25 C 1.38814 * 120.00176 * 180.02562 * 23 22 21 26 26 N 1.31619 * 120.00061 * 359.97438 * 25 23 22 27 27 Si 1.86807 * 120.00040 * 180.02562 * 25 23 22 28 28 H 1.48499 * 109.47005 * 89.99848 * 27 25 23 29 29 H 1.48498 * 109.46939 * 209.99838 * 27 25 23 30 30 H 1.48503 * 109.46939 * 329.99717 * 27 25 23 31 31 H 1.08998 * 109.46918 * 182.17573 * 1 2 3 32 32 H 1.08996 * 109.47141 * 302.17779 * 1 2 3 33 33 H 1.08996 * 109.46540 * 62.17666 * 1 2 3 34 34 H 1.09004 * 110.40266 * 261.52401 * 4 2 1 35 35 H 1.09006 * 110.40687 * 23.83270 * 4 2 1 36 36 H 1.08000 * 119.71413 * 359.97438 * 9 8 6 37 37 H 1.08003 * 120.12590 * 0.02562 * 12 11 10 38 38 H 1.08002 * 119.49089 * 179.97438 * 13 12 11 39 39 H 1.08004 * 119.50533 * 180.02562 * 14 13 12 40 40 H 1.07997 * 120.15148 * 180.02562 * 15 14 13 41 41 H 1.09002 * 110.40776 * 280.72897 * 18 5 4 42 42 H 1.09002 * 110.40863 * 158.41306 * 18 5 4 43 43 H 1.09005 * 109.46850 * 301.99165 * 21 19 2 44 44 H 1.08998 * 109.47834 * 61.98951 * 21 19 2 45 45 H 0.97000 * 120.00162 * 359.97438 * 22 21 19 46 46 H 0.96998 * 120.00067 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9084 1.0222 0.0000 4 6 2.0667 -0.7733 1.2238 5 7 3.2688 -1.4842 0.7212 6 6 4.4460 -1.6704 1.3506 7 8 5.3409 -2.2788 0.7979 8 6 4.6490 -1.1331 2.7171 9 6 5.8768 -1.3354 3.3709 10 7 6.0756 -0.8627 4.5792 11 6 5.0991 -0.1906 5.1993 12 6 5.2828 0.3214 6.4952 13 6 4.2721 1.0007 7.1024 14 6 3.0511 1.1995 6.4582 15 6 2.8348 0.7196 5.2044 16 6 3.8562 0.0113 4.5426 17 7 3.6723 -0.4717 3.3134 18 6 2.8802 -1.9417 -0.6332 19 6 2.0664 -0.7705 -1.2244 20 1 1.2410 -1.1488 -1.8274 21 6 2.9693 0.1325 -2.0672 22 7 3.4292 -0.6023 -3.2482 23 6 4.2544 0.0070 -4.1553 24 1 4.5659 1.0295 -4.0003 25 6 4.6897 -0.6890 -5.2747 26 7 4.3098 -1.9349 -5.4638 27 14 5.8160 0.1420 -6.5118 28 1 7.2313 -0.0880 -6.1252 29 1 5.5731 -0.4262 -7.8620 30 1 5.5390 1.6008 -6.5314 31 1 -0.3633 -1.0269 0.0390 32 1 -0.3633 0.5473 0.8698 33 1 -0.3632 0.4797 -0.9089 34 1 2.3400 -0.0814 2.0206 35 1 1.3226 -1.4862 1.5792 36 1 6.6646 -1.8816 2.8734 37 1 6.2226 0.1762 7.0073 38 1 4.4177 1.3920 8.0985 39 1 2.2657 1.7427 6.9628 40 1 1.8843 0.8816 4.7180 41 1 2.2639 -2.8385 -0.5691 42 1 3.7662 -2.1327 -1.2387 43 1 2.4099 1.0133 -2.3824 44 1 3.8298 0.4417 -1.4739 45 1 3.1492 -1.5205 -3.3877 46 1 4.6137 -2.4212 -6.2462 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716985306.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:42 Heat of formation + Delta-G solvation = 61.533842 kcal Electronic energy + Delta-G solvation = -29032.702164 eV Core-core repulsion = 25116.176789 eV Total energy + Delta-G solvation = -3916.525375 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.87474 -39.92769 -38.19568 -37.41029 -35.36651 -34.46944 -32.76856 -31.44310 -31.24246 -31.01014 -28.95040 -26.69534 -26.10115 -25.50750 -24.50684 -23.26517 -22.68076 -21.29693 -20.45680 -19.51097 -18.73448 -18.64838 -17.37697 -16.95406 -16.21774 -16.03336 -15.77375 -15.29290 -15.17023 -14.80241 -14.67623 -14.27820 -14.11825 -13.92999 -13.42624 -13.32996 -12.88816 -12.82760 -12.63861 -12.37382 -12.30295 -12.20814 -12.16324 -12.04793 -11.84279 -11.42978 -11.38449 -10.98983 -10.80561 -10.53349 -10.49080 -10.29576 -10.20735 -9.93742 -9.59836 -9.38389 -9.28484 -9.04064 -8.82552 -8.56345 -6.86682 -5.70926 -2.99285 -0.35857 0.04684 1.44171 2.12904 2.78671 2.97982 3.48365 3.51319 3.53176 3.54535 3.68795 3.71169 3.84459 4.28456 4.39661 4.50864 4.61778 4.68610 4.73671 4.80226 4.89850 4.94363 5.05071 5.38223 5.42346 5.46510 5.49463 5.57360 5.60003 5.63191 5.67809 5.74329 5.81396 5.86068 6.00595 6.01819 6.13741 6.15185 6.19695 6.25992 6.31163 6.49778 6.54723 6.75644 6.77336 6.92936 7.24705 7.59937 7.75317 8.09233 8.47870 9.59064 10.16081 10.50843 11.52051 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.015237 B = 0.002703 C = 0.002487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1837.189672 B =10355.501585 C =11255.871143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.103 4.103 3 H 0.081 0.919 4 C 0.093 3.907 5 N -0.595 5.595 6 C 0.587 3.413 7 O -0.518 6.518 8 C 0.074 3.926 9 C 0.130 3.870 10 N -0.425 5.425 11 C 0.091 3.909 12 C -0.087 4.087 13 C -0.092 4.092 14 C -0.102 4.102 15 C -0.075 4.075 16 C 0.073 3.927 17 N -0.389 5.389 18 C 0.108 3.892 19 C -0.105 4.105 20 H 0.089 0.911 21 C 0.163 3.837 22 N -0.731 5.731 23 C -0.237 4.237 24 H 0.069 0.931 25 C -0.014 4.014 26 N -0.933 5.933 27 Si 0.906 3.094 28 H -0.290 1.290 29 H -0.291 1.291 30 H -0.283 1.283 31 H 0.056 0.944 32 H 0.053 0.947 33 H 0.061 0.939 34 H 0.113 0.887 35 H 0.068 0.932 36 H 0.190 0.810 37 H 0.142 0.858 38 H 0.137 0.863 39 H 0.138 0.862 40 H 0.143 0.857 41 H 0.069 0.931 42 H 0.101 0.899 43 H 0.020 0.980 44 H 0.017 0.983 45 H 0.384 0.616 46 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.215 4.980 28.133 29.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.123 4.123 3 H 0.099 0.901 4 C -0.030 4.030 5 N -0.327 5.327 6 C 0.372 3.628 7 O -0.393 6.393 8 C -0.082 4.082 9 C -0.045 4.045 10 N -0.138 5.138 11 C -0.034 4.034 12 C -0.107 4.107 13 C -0.112 4.112 14 C -0.122 4.122 15 C -0.095 4.095 16 C -0.053 4.053 17 N -0.107 5.107 18 C -0.014 4.014 19 C -0.124 4.124 20 H 0.107 0.893 21 C 0.036 3.964 22 N -0.376 5.376 23 C -0.369 4.369 24 H 0.087 0.913 25 C -0.209 4.209 26 N -0.582 5.582 27 Si 0.737 3.263 28 H -0.217 1.217 29 H -0.218 1.218 30 H -0.208 1.208 31 H 0.075 0.925 32 H 0.072 0.928 33 H 0.080 0.920 34 H 0.130 0.870 35 H 0.086 0.914 36 H 0.206 0.794 37 H 0.159 0.841 38 H 0.155 0.845 39 H 0.156 0.844 40 H 0.161 0.839 41 H 0.088 0.912 42 H 0.120 0.880 43 H 0.038 0.962 44 H 0.035 0.965 45 H 0.217 0.783 46 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -6.574 4.834 27.931 29.098 hybrid contribution 0.508 0.135 -0.862 1.010 sum -6.067 4.969 27.068 28.181 Atomic orbital electron populations 1.21793 0.94155 1.01850 1.01861 1.22154 0.95904 0.99969 0.94249 0.90070 1.23080 0.85914 0.96364 0.97666 1.48774 1.12290 1.53853 1.17743 1.17135 0.81697 0.80597 0.83396 1.90871 1.41179 1.41676 1.65611 1.22549 0.92314 0.96973 0.96351 1.24028 0.96367 0.94052 0.90064 1.68853 1.29629 1.06909 1.08418 1.19823 0.90700 0.96837 0.96062 1.20841 1.00393 0.97178 0.92246 1.21101 0.92756 0.96914 1.00397 1.21047 0.97663 0.98889 0.94628 1.20895 0.98184 0.95843 0.94543 1.19723 0.94634 0.99334 0.91597 1.68709 1.29621 1.05081 1.07301 1.22590 1.00717 0.96294 0.81795 1.22421 0.98547 0.95762 0.95677 0.89273 1.20669 0.94205 0.93317 0.88254 1.42358 1.58159 1.14304 1.22746 1.19194 1.20881 0.96504 1.00292 0.91348 1.24724 1.01122 0.96246 0.98848 1.69651 1.49217 1.09559 1.29744 0.86200 0.80781 0.78392 0.80889 1.21713 1.21785 1.20840 0.92525 0.92761 0.92033 0.86961 0.91360 0.79355 0.84053 0.84507 0.84440 0.83893 0.91246 0.88038 0.96205 0.96496 0.78268 0.93540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.37 8.93 37.16 0.33 -1.04 16 2 C -0.10 -1.28 3.31 -89.21 -0.30 -1.57 16 3 H 0.08 1.05 7.71 -51.93 -0.40 0.65 16 4 C 0.09 1.12 6.09 -2.25 -0.01 1.11 16 5 N -0.59 -9.21 3.33 -170.03 -0.57 -9.78 16 6 C 0.59 9.74 7.91 -12.15 -0.10 9.65 16 7 O -0.52 -10.29 16.59 5.36 0.09 -10.20 16 8 C 0.07 1.03 6.74 -82.74 -0.56 0.47 16 9 C 0.13 1.67 10.75 -16.92 -0.18 1.49 16 10 N -0.42 -5.27 10.45 -10.53 -0.11 -5.38 16 11 C 0.09 1.00 6.60 -84.70 -0.56 0.44 16 12 C -0.09 -0.69 9.98 -39.49 -0.39 -1.08 16 13 C -0.09 -0.50 9.95 -39.90 -0.40 -0.89 16 14 C -0.10 -0.55 9.95 -39.93 -0.40 -0.95 16 15 C -0.08 -0.57 9.99 -39.42 -0.39 -0.96 16 16 C 0.07 0.80 6.60 -84.79 -0.56 0.24 16 17 N -0.39 -4.81 6.73 -7.39 -0.05 -4.86 16 18 C 0.11 1.80 6.39 -2.41 -0.02 1.79 16 19 C -0.10 -1.67 2.78 -89.22 -0.25 -1.91 16 20 H 0.09 1.39 7.72 -51.93 -0.40 0.99 16 21 C 0.16 3.36 5.41 -4.04 -0.02 3.34 16 22 N -0.73 -18.90 5.12 -59.91 -0.31 -19.21 16 23 C -0.24 -6.86 9.99 -15.06 -0.15 -7.01 16 24 H 0.07 1.93 7.83 -52.48 -0.41 1.52 16 25 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 26 N -0.93 -28.83 13.06 55.49 0.72 -28.10 16 27 Si 0.91 23.11 29.55 -169.99 -5.02 18.08 16 28 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 29 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 30 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 31 H 0.06 0.53 8.10 -51.93 -0.42 0.11 16 32 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.11 1.31 5.18 -51.93 -0.27 1.04 16 35 H 0.07 0.74 7.83 -51.93 -0.41 0.33 16 36 H 0.19 2.21 7.62 -52.49 -0.40 1.81 16 37 H 0.14 0.90 8.06 -52.48 -0.42 0.48 16 38 H 0.14 0.34 8.06 -52.49 -0.42 -0.08 16 39 H 0.14 0.34 8.06 -52.48 -0.42 -0.08 16 40 H 0.14 0.84 8.06 -52.49 -0.42 0.42 16 41 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 42 H 0.10 2.12 7.07 -51.93 -0.37 1.75 16 43 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 44 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 45 H 0.38 10.30 7.38 -40.82 -0.30 10.00 16 46 H 0.25 7.61 8.31 -40.82 -0.34 7.27 16 LS Contribution 380.71 15.07 5.74 5.74 Total: -1.00 -34.85 380.71 -9.87 -44.72 By element: Atomic # 1 Polarization: 12.68 SS G_CDS: -6.32 Total: 6.37 kcal Atomic # 6 Polarization: 6.65 SS G_CDS: -4.04 Total: 2.61 kcal Atomic # 7 Polarization: -67.01 SS G_CDS: -0.31 Total: -67.32 kcal Atomic # 8 Polarization: -10.29 SS G_CDS: 0.09 Total: -10.20 kcal Atomic # 14 Polarization: 23.11 SS G_CDS: -5.02 Total: 18.08 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -34.85 -9.87 -44.72 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716985306.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.253 kcal (2) G-P(sol) polarization free energy of solvation -34.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.719 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds