Wall clock time and date at job start Sat Apr 11 2020 06:05:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 110.31070 * 2 1 4 4 C 1.54395 * 110.34257 * 122.28651 * 2 1 3 5 5 N 1.48427 * 104.65420 * 142.73646 * 4 2 1 6 6 C 1.34781 * 127.98028 * 140.36956 * 5 4 2 7 7 O 1.21511 * 119.99898 * 180.08928 * 6 5 4 8 8 C 1.48233 * 120.00085 * 0.09259 * 6 5 4 9 9 C 1.40570 * 119.74824 * 179.72617 * 8 6 5 10 10 N 1.31261 * 120.56969 * 179.76484 * 9 8 6 11 11 C 1.33784 * 119.80529 * 0.48380 * 10 9 8 12 12 C 1.40542 * 120.99790 * 179.72758 * 11 10 9 13 13 C 1.36078 * 119.75296 * 180.02562 * 12 11 10 14 14 C 1.39477 * 121.01242 * 359.97438 * 13 12 11 15 15 C 1.35988 * 120.98607 * 0.02562 * 14 13 12 16 16 C 1.40814 * 119.69950 * 359.97438 * 15 14 13 17 17 N 1.32169 * 119.74441 * 359.97438 * 8 6 5 18 18 C 1.48146 * 104.18376 * 320.44270 * 5 4 2 19 19 C 1.54289 * 110.34289 * 237.81998 * 2 1 3 20 20 H 1.08998 * 110.43086 * 0.05057 * 19 2 1 21 21 C 1.52998 * 110.34096 * 122.26350 * 19 2 1 22 22 N 1.46497 * 109.47193 * 181.99223 * 21 19 2 23 23 C 1.36933 * 120.00260 * 179.97438 * 22 21 19 24 24 H 1.08004 * 119.99857 * 359.97438 * 23 22 21 25 25 C 1.38814 * 120.00176 * 180.02562 * 23 22 21 26 26 N 1.31619 * 120.00061 * 359.97438 * 25 23 22 27 27 Si 1.86807 * 120.00040 * 180.02562 * 25 23 22 28 28 H 1.48499 * 109.47005 * 89.99848 * 27 25 23 29 29 H 1.48498 * 109.46939 * 209.99838 * 27 25 23 30 30 H 1.48503 * 109.46939 * 329.99717 * 27 25 23 31 31 H 1.08998 * 109.46918 * 182.17573 * 1 2 3 32 32 H 1.08996 * 109.47141 * 302.17779 * 1 2 3 33 33 H 1.08996 * 109.46540 * 62.17666 * 1 2 3 34 34 H 1.09004 * 110.40266 * 261.52401 * 4 2 1 35 35 H 1.09006 * 110.40687 * 23.83270 * 4 2 1 36 36 H 1.08000 * 119.71413 * 359.97438 * 9 8 6 37 37 H 1.08003 * 120.12590 * 0.02562 * 12 11 10 38 38 H 1.08002 * 119.49089 * 179.97438 * 13 12 11 39 39 H 1.08004 * 119.50533 * 180.02562 * 14 13 12 40 40 H 1.07997 * 120.15148 * 180.02562 * 15 14 13 41 41 H 1.09002 * 110.40776 * 280.72897 * 18 5 4 42 42 H 1.09002 * 110.40863 * 158.41306 * 18 5 4 43 43 H 1.09005 * 109.46850 * 301.99165 * 21 19 2 44 44 H 1.08998 * 109.47834 * 61.98951 * 21 19 2 45 45 H 0.97000 * 120.00162 * 359.97438 * 22 21 19 46 46 H 0.96998 * 120.00067 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9084 1.0222 0.0000 4 6 2.0667 -0.7733 1.2238 5 7 3.2688 -1.4842 0.7212 6 6 4.4460 -1.6704 1.3506 7 8 5.3409 -2.2788 0.7979 8 6 4.6490 -1.1331 2.7171 9 6 5.8768 -1.3354 3.3709 10 7 6.0756 -0.8627 4.5792 11 6 5.0991 -0.1906 5.1993 12 6 5.2828 0.3214 6.4952 13 6 4.2721 1.0007 7.1024 14 6 3.0511 1.1995 6.4582 15 6 2.8348 0.7196 5.2044 16 6 3.8562 0.0113 4.5426 17 7 3.6723 -0.4717 3.3134 18 6 2.8802 -1.9417 -0.6332 19 6 2.0664 -0.7705 -1.2244 20 1 1.2410 -1.1488 -1.8274 21 6 2.9693 0.1325 -2.0672 22 7 3.4292 -0.6023 -3.2482 23 6 4.2544 0.0070 -4.1553 24 1 4.5659 1.0295 -4.0003 25 6 4.6897 -0.6890 -5.2747 26 7 4.3098 -1.9349 -5.4638 27 14 5.8160 0.1420 -6.5118 28 1 7.2313 -0.0880 -6.1252 29 1 5.5731 -0.4262 -7.8620 30 1 5.5390 1.6008 -6.5314 31 1 -0.3633 -1.0269 0.0390 32 1 -0.3633 0.5473 0.8698 33 1 -0.3632 0.4797 -0.9089 34 1 2.3400 -0.0814 2.0206 35 1 1.3226 -1.4862 1.5792 36 1 6.6646 -1.8816 2.8734 37 1 6.2226 0.1762 7.0073 38 1 4.4177 1.3920 8.0985 39 1 2.2657 1.7427 6.9628 40 1 1.8843 0.8816 4.7180 41 1 2.2639 -2.8385 -0.5691 42 1 3.7662 -2.1327 -1.2387 43 1 2.4099 1.0133 -2.3824 44 1 3.8298 0.4417 -1.4739 45 1 3.1492 -1.5205 -3.3877 46 1 4.6137 -2.4212 -6.2462 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716985306.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:41 Heat of formation + Delta-G solvation = 38.072985 kcal Electronic energy + Delta-G solvation = -29033.719503 eV Core-core repulsion = 25116.176789 eV Total energy + Delta-G solvation = -3917.542714 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.71639 -41.11122 -39.32114 -38.27582 -36.54735 -36.07043 -34.10260 -33.12211 -32.15519 -31.64759 -30.51455 -27.84593 -27.28149 -26.57091 -25.61535 -24.95070 -23.33497 -22.72893 -21.49881 -20.80820 -19.59697 -19.50886 -19.16407 -18.18253 -17.38751 -17.15191 -16.71129 -16.60223 -16.29572 -15.87813 -15.69851 -15.41938 -15.25759 -15.22562 -14.99610 -14.75626 -14.28079 -13.99857 -13.74309 -13.37922 -13.23462 -12.98931 -12.97285 -12.91122 -12.88356 -12.80412 -12.71930 -12.64767 -12.54338 -12.15856 -11.96644 -11.74893 -11.57939 -11.42121 -11.34317 -10.97897 -10.24639 -10.15603 -9.79641 -9.63629 -9.03173 -7.97930 -5.26766 -1.16117 -0.73038 0.72459 1.26895 1.42785 1.46116 1.53839 1.62841 2.01202 2.52917 2.60285 2.89020 2.92687 3.05341 3.34642 3.38353 3.58359 3.64038 3.69955 3.82020 3.93361 4.10149 4.19686 4.24354 4.26581 4.35962 4.40501 4.56429 4.60939 4.71958 4.75004 4.80210 4.86616 4.90445 4.94590 5.02203 5.06028 5.14955 5.17295 5.25647 5.29462 5.34184 5.36281 5.44455 5.57991 5.68408 5.90724 6.24418 6.31862 6.44753 6.84030 7.30572 8.05596 8.29666 9.25578 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.015237 B = 0.002703 C = 0.002487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1837.189672 B =10355.501585 C =11255.871143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.092 4.092 3 H 0.077 0.923 4 C 0.097 3.903 5 N -0.598 5.598 6 C 0.581 3.419 7 O -0.569 6.569 8 C 0.049 3.951 9 C 0.115 3.885 10 N -0.437 5.437 11 C 0.075 3.925 12 C -0.109 4.109 13 C -0.065 4.065 14 C -0.083 4.083 15 C -0.085 4.085 16 C 0.056 3.944 17 N -0.384 5.384 18 C 0.109 3.891 19 C -0.095 4.095 20 H 0.097 0.903 21 C 0.166 3.834 22 N -0.742 5.742 23 C -0.248 4.248 24 H 0.070 0.930 25 C -0.074 4.074 26 N -0.967 5.967 27 Si 0.973 3.027 28 H -0.291 1.291 29 H -0.290 1.290 30 H -0.268 1.268 31 H 0.065 0.935 32 H 0.080 0.920 33 H 0.057 0.943 34 H 0.122 0.878 35 H 0.091 0.909 36 H 0.184 0.816 37 H 0.152 0.848 38 H 0.178 0.822 39 H 0.180 0.820 40 H 0.162 0.838 41 H 0.090 0.910 42 H 0.051 0.949 43 H 0.027 0.973 44 H -0.003 1.003 45 H 0.375 0.625 46 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.681 7.580 31.675 33.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.112 4.112 3 H 0.096 0.904 4 C -0.025 4.025 5 N -0.328 5.328 6 C 0.368 3.632 7 O -0.448 6.448 8 C -0.105 4.105 9 C -0.059 4.059 10 N -0.151 5.151 11 C -0.051 4.051 12 C -0.128 4.128 13 C -0.085 4.085 14 C -0.103 4.103 15 C -0.105 4.105 16 C -0.072 4.072 17 N -0.102 5.102 18 C -0.014 4.014 19 C -0.114 4.114 20 H 0.115 0.885 21 C 0.039 3.961 22 N -0.385 5.385 23 C -0.380 4.380 24 H 0.088 0.912 25 C -0.267 4.267 26 N -0.618 5.618 27 Si 0.802 3.198 28 H -0.218 1.218 29 H -0.216 1.216 30 H -0.193 1.193 31 H 0.084 0.916 32 H 0.099 0.901 33 H 0.076 0.924 34 H 0.139 0.861 35 H 0.109 0.891 36 H 0.201 0.799 37 H 0.170 0.830 38 H 0.196 0.804 39 H 0.198 0.802 40 H 0.180 0.820 41 H 0.108 0.892 42 H 0.070 0.930 43 H 0.045 0.955 44 H 0.015 0.985 45 H 0.207 0.793 46 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -9.072 7.466 31.484 33.605 hybrid contribution 1.202 -0.516 -1.658 2.112 sum -7.869 6.950 29.826 31.620 Atomic orbital electron populations 1.21764 0.91363 1.02921 1.02958 1.22132 0.98021 0.99023 0.92052 0.90440 1.23282 0.84839 0.96743 0.97599 1.48911 1.13030 1.53718 1.17169 1.17602 0.81299 0.79936 0.84374 1.90819 1.42775 1.44035 1.67164 1.21990 0.93471 0.99623 0.95378 1.23900 0.96263 0.95051 0.90638 1.68842 1.30609 1.07519 1.08095 1.20360 0.90599 0.96780 0.97349 1.21115 1.02116 0.98317 0.91223 1.21660 0.91537 0.93783 1.01509 1.21603 0.98403 0.96838 0.93417 1.21229 0.98064 0.95648 0.95519 1.20221 0.95745 1.00033 0.91175 1.68565 1.28979 1.04507 1.08130 1.22457 0.98983 0.97694 0.82221 1.22326 0.97519 0.95030 0.96540 0.88459 1.20771 0.94245 0.94119 0.86958 1.42550 1.57948 1.14229 1.23801 1.19579 1.20887 0.96683 1.00819 0.91195 1.25576 1.03098 0.97011 1.01003 1.69807 1.50699 1.10960 1.30297 0.85150 0.78368 0.78105 0.78209 1.21828 1.21594 1.19258 0.91626 0.90133 0.92355 0.86086 0.89067 0.79889 0.83036 0.80430 0.80223 0.82003 0.89218 0.93025 0.95509 0.98483 0.79262 0.93906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.19 8.93 71.98 0.64 -1.54 16 2 C -0.09 -2.15 3.31 -9.88 -0.03 -2.19 16 3 H 0.08 1.89 7.71 -2.39 -0.02 1.87 16 4 C 0.10 2.22 6.09 86.48 0.53 2.75 16 5 N -0.60 -19.29 3.33 -810.13 -2.70 -21.98 16 6 C 0.58 20.92 7.91 86.90 0.69 21.61 16 7 O -0.57 -25.08 16.59 -3.75 -0.06 -25.14 16 8 C 0.05 1.47 6.74 42.32 0.29 1.75 16 9 C 0.12 3.26 10.75 85.35 0.92 4.18 16 10 N -0.44 -11.33 10.45 -187.22 -1.96 -13.29 16 11 C 0.07 1.59 6.60 40.34 0.27 1.86 16 12 C -0.11 -1.42 9.98 22.33 0.22 -1.20 16 13 C -0.07 -0.37 9.95 22.07 0.22 -0.15 16 14 C -0.08 -0.43 9.95 22.05 0.22 -0.21 16 15 C -0.09 -0.97 9.99 22.38 0.22 -0.75 16 16 C 0.06 1.14 6.60 40.48 0.27 1.40 16 17 N -0.38 -9.41 6.73 -177.29 -1.19 -10.60 16 18 C 0.11 3.83 6.39 86.53 0.55 4.39 16 19 C -0.09 -3.05 2.78 -9.89 -0.03 -3.07 16 20 H 0.10 3.00 7.72 -2.39 -0.02 2.98 16 21 C 0.17 7.06 5.41 86.38 0.47 7.52 16 22 N -0.74 -39.99 5.12 -343.46 -1.76 -41.75 16 23 C -0.25 -14.72 9.99 84.03 0.84 -13.88 16 24 H 0.07 4.04 7.83 -2.91 -0.02 4.01 16 25 C -0.07 -4.50 5.50 84.86 0.47 -4.03 16 26 N -0.97 -61.66 13.06 21.65 0.28 -61.38 16 27 Si 0.97 48.47 29.55 68.60 2.03 50.50 16 28 H -0.29 -14.46 7.11 99.48 0.71 -13.75 16 29 H -0.29 -14.25 7.11 99.48 0.71 -13.54 16 30 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 31 H 0.06 1.00 8.10 -2.39 -0.02 0.98 16 32 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 33 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 34 H 0.12 2.63 5.18 -2.38 -0.01 2.62 16 35 H 0.09 1.72 7.83 -2.38 -0.02 1.70 16 36 H 0.18 5.05 7.62 -2.91 -0.02 5.03 16 37 H 0.15 1.61 8.06 -2.91 -0.02 1.58 16 38 H 0.18 -0.34 8.06 -2.91 -0.02 -0.36 16 39 H 0.18 -0.47 8.06 -2.91 -0.02 -0.49 16 40 H 0.16 1.19 8.06 -2.91 -0.02 1.17 16 41 H 0.09 2.75 8.14 -2.39 -0.02 2.73 16 42 H 0.05 2.35 7.07 -2.39 -0.02 2.33 16 43 H 0.03 1.12 8.14 -2.38 -0.02 1.10 16 44 H 0.00 -0.13 8.14 -2.39 -0.02 -0.15 16 45 H 0.38 21.19 7.38 -92.71 -0.68 20.50 16 46 H 0.25 15.51 8.31 -92.71 -0.77 14.74 16 Total: -1.00 -81.77 380.71 1.71 -80.06 By element: Atomic # 1 Polarization: 24.82 SS G_CDS: 0.33 Total: 25.14 kcal Atomic # 6 Polarization: 11.69 SS G_CDS: 6.74 Total: 18.43 kcal Atomic # 7 Polarization: -141.67 SS G_CDS: -7.32 Total: -148.99 kcal Atomic # 8 Polarization: -25.08 SS G_CDS: -0.06 Total: -25.14 kcal Atomic # 14 Polarization: 48.47 SS G_CDS: 2.03 Total: 50.50 kcal Total: -81.77 1.71 -80.06 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716985306.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.132 kcal (2) G-P(sol) polarization free energy of solvation -81.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.059 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds