Wall clock time and date at job start Sat Apr 11 2020 06:05:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09008 * 110.30365 * 2 1 4 4 C 1.54393 * 110.34421 * 122.28632 * 2 1 3 5 5 N 1.48139 * 104.62068 * 142.74101 * 4 2 1 6 6 C 1.34777 * 127.83866 * 140.41856 * 5 4 2 7 7 O 1.21552 * 119.99645 * 179.97438 * 6 5 4 8 8 C 1.47890 * 120.00177 * 359.97438 * 6 5 4 9 9 N 1.32137 * 120.03092 * 359.72500 * 8 6 5 10 10 C 1.31981 * 122.76829 * 179.69695 * 9 8 6 11 11 C 1.37785 * 121.72800 * 0.58442 * 10 9 8 12 12 C 1.40392 * 118.72506 * 359.71917 * 11 10 9 13 13 C 1.40637 * 122.27792 * 180.02562 * 12 11 10 14 14 C 1.36645 * 117.95500 * 179.97438 * 13 12 11 15 15 C 1.39405 * 119.91875 * 0.02562 * 14 13 12 16 16 N 1.31204 * 121.85642 * 359.97438 * 15 14 13 17 17 C 1.33259 * 121.21908 * 0.02562 * 16 15 14 18 18 C 1.48315 * 104.38933 * 320.47276 * 5 4 2 19 19 C 1.54283 * 110.34759 * 237.82267 * 2 1 3 20 20 H 1.08997 * 110.34370 * 122.15005 * 19 2 1 21 21 C 1.53004 * 110.34155 * 0.02562 * 19 2 1 22 22 N 1.46499 * 109.47198 * 176.47418 * 21 19 2 23 23 C 1.36939 * 119.99933 * 180.27608 * 22 21 19 24 24 H 1.08001 * 119.99700 * 359.72658 * 23 22 21 25 25 C 1.38810 * 120.00095 * 179.71972 * 23 22 21 26 26 N 1.31624 * 119.99740 * 0.02562 * 25 23 22 27 27 Si 1.86796 * 120.00044 * 179.97438 * 25 23 22 28 28 H 1.48497 * 109.47201 * 0.02562 * 27 25 23 29 29 H 1.48499 * 109.47080 * 120.00466 * 27 25 23 30 30 H 1.48506 * 109.47018 * 240.00565 * 27 25 23 31 31 H 1.08998 * 109.46692 * 182.17389 * 1 2 3 32 32 H 1.08996 * 109.47452 * 302.18042 * 1 2 3 33 33 H 1.09000 * 109.46682 * 62.17536 * 1 2 3 34 34 H 1.09004 * 110.40591 * 261.52516 * 4 2 1 35 35 H 1.09000 * 110.40490 * 23.83061 * 4 2 1 36 36 H 1.07998 * 119.13852 * 180.32715 * 10 9 8 37 37 H 1.07996 * 120.63971 * 179.69103 * 11 10 9 38 38 H 1.07998 * 121.02567 * 0.02562 * 13 12 11 39 39 H 1.07990 * 120.04268 * 180.02562 * 14 13 12 40 40 H 1.08001 * 119.06855 * 180.02562 * 15 14 13 41 41 H 1.08998 * 110.38541 * 280.73226 * 18 5 4 42 42 H 1.09004 * 110.50344 * 158.25046 * 18 5 4 43 43 H 1.09009 * 109.46730 * 56.47206 * 21 19 2 44 44 H 1.08998 * 109.46846 * 296.47750 * 21 19 2 45 45 H 0.97001 * 119.99790 * 359.97438 * 22 21 19 46 46 H 0.96998 * 119.99409 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9083 1.0224 0.0000 4 6 2.0668 -0.7732 1.2238 5 7 3.2665 -1.4823 0.7213 6 6 4.4425 -1.6676 1.3532 7 8 5.3386 -2.2772 0.8028 8 6 4.6426 -1.1294 2.7160 9 7 3.6707 -0.4620 3.3127 10 6 3.7886 0.0363 4.5292 11 6 4.9498 -0.0991 5.2583 12 6 6.0288 -0.7918 4.6864 13 6 7.2477 -0.9745 5.3636 14 6 8.2391 -1.6635 4.7236 15 6 8.0233 -2.1593 3.4387 16 7 6.8839 -1.9858 2.8117 17 6 5.8769 -1.3231 3.3798 18 6 2.8819 -1.9415 -0.6355 19 6 2.0665 -0.7703 -1.2244 20 1 2.7081 -0.1265 -1.8258 21 6 0.9063 -1.3010 -2.0690 22 7 1.4348 -1.9554 -3.2685 23 6 0.5765 -2.5052 -4.1830 24 1 -0.4898 -2.4603 -4.0177 25 6 1.0771 -3.1201 -5.3224 26 7 2.3767 -3.1750 -5.5235 27 14 -0.0937 -3.8707 -6.5694 28 1 -1.4935 -3.6778 -6.1129 29 1 0.0932 -3.2080 -7.8852 30 1 0.1886 -5.3227 -6.7019 31 1 -0.3633 -1.0269 0.0390 32 1 -0.3634 0.5473 0.8697 33 1 -0.3633 0.4797 -0.9089 34 1 2.3401 -0.0814 2.0206 35 1 1.3227 -1.4861 1.5792 36 1 2.9543 0.5676 4.9629 37 1 5.0288 0.3200 6.2505 38 1 7.3955 -0.5830 6.3592 39 1 9.1885 -1.8238 5.2125 40 1 8.8162 -2.7023 2.9457 41 1 2.2668 -2.8392 -0.5723 42 1 3.7689 -2.1293 -1.2407 43 1 0.2611 -0.4725 -2.3614 44 1 0.3317 -2.0206 -1.4858 45 1 2.3926 -1.9953 -3.4170 46 1 2.7264 -3.6051 -6.3195 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716985425.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:44 Heat of formation + Delta-G solvation = 70.444211 kcal Electronic energy + Delta-G solvation = -28940.111680 eV Core-core repulsion = 25023.972688 eV Total energy + Delta-G solvation = -3916.138992 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.64889 -39.77330 -38.35314 -37.71322 -34.53396 -34.05822 -32.82335 -31.85173 -31.06359 -30.87857 -28.85008 -26.69617 -25.59070 -25.07669 -24.44585 -23.74792 -22.70195 -21.87807 -20.08648 -18.96792 -18.67067 -17.87209 -17.49352 -16.86892 -16.47289 -15.87076 -15.60759 -15.30113 -14.97747 -14.78604 -14.54900 -14.44302 -14.08899 -13.61881 -13.51869 -13.35229 -13.27233 -13.00723 -12.80025 -12.62749 -12.28861 -11.97903 -11.78990 -11.75081 -11.56695 -11.15686 -10.90090 -10.80930 -10.49285 -10.31421 -10.16926 -10.06334 -9.95508 -9.75909 -9.72518 -9.57916 -9.27296 -8.84944 -8.79110 -8.39318 -6.83342 -5.68561 -2.97276 -0.42140 0.29335 1.30228 2.41106 2.93199 3.09134 3.48578 3.53589 3.56284 3.77049 3.82209 3.88724 4.03303 4.19493 4.31513 4.40391 4.64458 4.72111 4.79880 4.89039 4.96568 5.04028 5.12676 5.17264 5.22521 5.46808 5.53293 5.65304 5.67110 5.70757 5.75366 5.77024 5.88789 6.01321 6.10509 6.11993 6.22405 6.24666 6.26179 6.37353 6.48274 6.57251 6.69836 6.85264 6.97591 7.26029 7.57353 7.77168 7.77484 8.33874 8.50053 9.60977 10.19825 10.53977 11.54293 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.018855 B = 0.002483 C = 0.002222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1484.652720 B =11271.985844 C =12598.647913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.100 4.100 3 H 0.075 0.925 4 C 0.093 3.907 5 N -0.605 5.605 6 C 0.577 3.423 7 O -0.495 6.495 8 C 0.154 3.846 9 N -0.439 5.439 10 C 0.072 3.928 11 C -0.125 4.125 12 C -0.083 4.083 13 C -0.065 4.065 14 C -0.154 4.154 15 C 0.132 3.868 16 N -0.419 5.419 17 C 0.106 3.894 18 C 0.117 3.883 19 C -0.106 4.106 20 H 0.079 0.921 21 C 0.163 3.837 22 N -0.735 5.735 23 C -0.237 4.237 24 H 0.070 0.930 25 C -0.015 4.015 26 N -0.932 5.932 27 Si 0.906 3.094 28 H -0.281 1.281 29 H -0.292 1.292 30 H -0.292 1.292 31 H 0.062 0.938 32 H 0.049 0.951 33 H 0.065 0.935 34 H 0.115 0.885 35 H 0.067 0.933 36 H 0.167 0.833 37 H 0.146 0.854 38 H 0.145 0.855 39 H 0.144 0.856 40 H 0.167 0.833 41 H 0.078 0.922 42 H 0.085 0.915 43 H 0.026 0.974 44 H 0.023 0.977 45 H 0.384 0.616 46 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.699 9.115 29.121 31.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.120 4.120 3 H 0.093 0.907 4 C -0.030 4.030 5 N -0.338 5.338 6 C 0.363 3.637 7 O -0.368 6.368 8 C 0.002 3.998 9 N -0.152 5.152 10 C -0.074 4.074 11 C -0.146 4.146 12 C -0.091 4.091 13 C -0.091 4.091 14 C -0.175 4.175 15 C -0.042 4.042 16 N -0.127 5.127 17 C -0.019 4.019 18 C -0.004 4.004 19 C -0.125 4.125 20 H 0.097 0.903 21 C 0.035 3.965 22 N -0.379 5.379 23 C -0.369 4.369 24 H 0.088 0.912 25 C -0.211 4.211 26 N -0.580 5.580 27 Si 0.737 3.263 28 H -0.206 1.206 29 H -0.220 1.220 30 H -0.219 1.219 31 H 0.081 0.919 32 H 0.068 0.932 33 H 0.084 0.916 34 H 0.132 0.868 35 H 0.085 0.915 36 H 0.184 0.816 37 H 0.164 0.836 38 H 0.163 0.837 39 H 0.162 0.838 40 H 0.184 0.816 41 H 0.096 0.904 42 H 0.103 0.897 43 H 0.044 0.956 44 H 0.041 0.959 45 H 0.217 0.783 46 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 7.076 8.565 27.548 29.704 hybrid contribution 0.612 -0.167 0.608 0.879 sum 7.687 8.398 28.156 30.371 Atomic orbital electron populations 1.21878 0.94158 1.02475 1.01633 1.22091 0.96330 0.99141 0.94415 0.90694 1.23018 0.86015 0.96431 0.97548 1.48879 1.12436 1.54610 1.17880 1.17125 0.81721 0.81180 0.83721 1.90897 1.40724 1.39991 1.65155 1.21568 0.88370 0.94861 0.95045 1.67548 1.30023 1.07051 1.10547 1.22692 0.97444 0.97461 0.89769 1.22369 0.93009 0.98038 1.01192 1.18975 0.96042 0.99103 0.94935 1.21416 0.91417 0.96447 0.99868 1.22154 1.00555 0.98215 0.96605 1.23382 0.94705 0.94650 0.91469 1.68343 0.99250 1.10945 1.34136 1.19458 0.94415 0.96739 0.91291 1.22510 0.99610 0.97110 0.81175 1.22337 0.98064 0.96328 0.95812 0.90285 1.20847 0.92950 0.94832 0.87854 1.42445 1.06617 1.67725 1.21089 1.19253 0.89813 1.28668 0.99138 0.91169 1.24750 0.95805 1.01833 0.98719 1.69680 1.10408 1.49386 1.28558 0.86135 0.79903 0.78725 0.81539 1.20609 1.21958 1.21926 0.91874 0.93190 0.91631 0.86756 0.91492 0.81569 0.83649 0.83709 0.83839 0.81631 0.90360 0.89696 0.95613 0.95898 0.78293 0.93589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.74 7.94 37.16 0.29 -1.44 16 2 C -0.10 -1.34 3.66 -89.22 -0.33 -1.67 16 3 H 0.07 0.95 8.14 -51.92 -0.42 0.53 16 4 C 0.09 1.23 6.09 -2.41 -0.01 1.21 16 5 N -0.60 -9.95 3.32 -170.26 -0.57 -10.51 16 6 C 0.58 10.19 7.90 -12.31 -0.10 10.10 16 7 O -0.50 -10.36 15.48 5.32 0.08 -10.28 16 8 C 0.15 2.24 6.79 -82.55 -0.56 1.68 16 9 N -0.44 -5.13 6.57 -9.55 -0.06 -5.19 16 10 C 0.07 0.58 11.12 -17.65 -0.20 0.38 16 11 C -0.13 -0.87 9.93 -38.94 -0.39 -1.26 16 12 C -0.08 -0.79 5.75 -106.79 -0.61 -1.40 16 13 C -0.07 -0.42 9.94 -39.25 -0.39 -0.82 16 14 C -0.15 -0.98 10.03 -39.72 -0.40 -1.38 16 15 C 0.13 1.26 11.14 -17.39 -0.19 1.06 16 16 N -0.42 -5.98 8.49 -10.75 -0.09 -6.07 16 17 C 0.11 1.42 6.61 -84.63 -0.56 0.86 16 18 C 0.12 2.13 6.34 -2.32 -0.01 2.12 16 19 C -0.11 -1.81 3.11 -89.22 -0.28 -2.08 16 20 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 21 C 0.16 3.27 4.39 -4.04 -0.02 3.25 16 22 N -0.73 -18.95 5.46 -59.90 -0.33 -19.27 16 23 C -0.24 -6.76 9.99 -15.06 -0.15 -6.91 16 24 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 25 C -0.02 -0.45 5.50 -17.43 -0.10 -0.54 16 26 N -0.93 -29.01 13.06 55.49 0.72 -28.29 16 27 Si 0.91 22.91 29.55 -169.99 -5.02 17.89 16 28 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 29 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 30 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 31 H 0.06 0.80 6.85 -51.93 -0.36 0.44 16 32 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.06 0.83 6.71 -51.93 -0.35 0.49 16 34 H 0.11 1.38 5.16 -51.93 -0.27 1.11 16 35 H 0.07 0.85 7.83 -51.93 -0.41 0.45 16 36 H 0.17 0.74 8.06 -52.49 -0.42 0.32 16 37 H 0.15 0.46 8.06 -52.49 -0.42 0.04 16 38 H 0.15 0.43 8.06 -52.49 -0.42 0.01 16 39 H 0.14 0.41 8.06 -52.49 -0.42 -0.01 16 40 H 0.17 1.13 8.06 -52.49 -0.42 0.71 16 41 H 0.08 1.48 7.78 -51.93 -0.40 1.08 16 42 H 0.08 1.73 7.89 -51.93 -0.41 1.32 16 43 H 0.03 0.52 6.58 -51.92 -0.34 0.18 16 44 H 0.02 0.46 6.89 -51.93 -0.36 0.11 16 45 H 0.38 10.53 7.56 -40.82 -0.31 10.23 16 46 H 0.25 7.65 8.31 -40.82 -0.34 7.31 16 LS Contribution 373.61 15.07 5.63 5.63 Total: -1.00 -36.77 373.61 -9.76 -46.53 By element: Atomic # 1 Polarization: 12.52 SS G_CDS: -6.13 Total: 6.39 kcal Atomic # 6 Polarization: 7.16 SS G_CDS: -4.00 Total: 3.16 kcal Atomic # 7 Polarization: -69.01 SS G_CDS: -0.32 Total: -69.33 kcal Atomic # 8 Polarization: -10.36 SS G_CDS: 0.08 Total: -10.28 kcal Atomic # 14 Polarization: 22.91 SS G_CDS: -5.02 Total: 17.89 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -36.77 -9.76 -46.53 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716985425.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.978 kcal (2) G-P(sol) polarization free energy of solvation -36.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.534 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds