Wall clock time and date at job start Sat Apr 11 2020 06:05:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 110.30651 * 2 1 4 4 C 1.54389 * 110.34044 * 122.17814 * 2 1 3 5 5 N 1.48146 * 104.71947 * 94.94492 * 4 2 1 6 6 C 1.34781 * 127.83592 * 219.64451 * 5 4 2 7 7 O 1.21547 * 119.99982 * 180.02562 * 6 5 4 8 8 C 1.47902 * 120.00089 * 0.02562 * 6 5 4 9 9 N 1.32140 * 120.03027 * 359.97438 * 8 6 5 10 10 C 1.31977 * 122.76723 * 180.02562 * 9 8 6 11 11 C 1.37779 * 121.72734 * 0.02562 * 10 9 8 12 12 C 1.40387 * 118.73130 * 0.02562 * 11 10 9 13 13 C 1.40640 * 122.28471 * 180.02562 * 12 11 10 14 14 C 1.36643 * 117.95113 * 179.97438 * 13 12 11 15 15 C 1.39392 * 119.92627 * 0.02562 * 14 13 12 16 16 N 1.31204 * 121.85804 * 0.02562 * 15 14 13 17 17 C 1.33265 * 121.21506 * 359.65776 * 16 15 14 18 18 C 1.48427 * 104.18376 * 39.57151 * 5 4 2 19 19 C 1.54289 * 110.34096 * 237.71390 * 2 1 3 20 20 H 1.08999 * 110.34342 * 0.10276 * 19 2 1 21 21 C 1.53002 * 110.34289 * 122.26350 * 19 2 1 22 22 N 1.46499 * 109.46964 * 185.00094 * 21 19 2 23 23 C 1.36936 * 119.99801 * 179.97438 * 22 21 19 24 24 H 1.08004 * 119.99865 * 0.02562 * 23 22 21 25 25 C 1.38809 * 120.00012 * 179.97438 * 23 22 21 26 26 N 1.31619 * 120.00152 * 0.02562 * 25 23 22 27 27 Si 1.86798 * 120.00227 * 180.02562 * 25 23 22 28 28 H 1.48501 * 109.47185 * 90.00087 * 27 25 23 29 29 H 1.48500 * 109.47455 * 210.00410 * 27 25 23 30 30 H 1.48500 * 109.46928 * 330.00348 * 27 25 23 31 31 H 1.09004 * 109.47334 * 299.28183 * 1 2 3 32 32 H 1.09000 * 109.46957 * 59.27570 * 1 2 3 33 33 H 1.09002 * 109.47681 * 179.27614 * 1 2 3 34 34 H 1.09002 * 110.40709 * 213.78791 * 4 2 1 35 35 H 1.09002 * 110.40588 * 336.10152 * 4 2 1 36 36 H 1.07998 * 119.13994 * 179.97438 * 10 9 8 37 37 H 1.08005 * 120.63446 * 180.02562 * 11 10 9 38 38 H 1.07997 * 121.02673 * 359.95309 * 13 12 11 39 39 H 1.08001 * 120.03421 * 179.97438 * 14 13 12 40 40 H 1.08007 * 119.07443 * 179.97438 * 15 14 13 41 41 H 1.09004 * 110.39413 * 201.64938 * 18 5 4 42 42 H 1.09006 * 110.49084 * 79.28969 * 18 5 4 43 43 H 1.09003 * 109.46396 * 304.99705 * 21 19 2 44 44 H 1.09001 * 109.46979 * 64.99395 * 21 19 2 45 45 H 0.97000 * 120.00123 * 359.97438 * 22 21 19 46 46 H 0.96997 * 120.00680 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9082 1.0222 0.0000 4 6 2.0666 -0.7709 1.2253 5 7 2.3133 -2.1443 0.7274 6 6 2.0752 -3.3091 1.3624 7 8 2.3346 -4.3633 0.8159 8 6 1.4983 -3.3045 2.7243 9 7 1.2166 -2.1587 3.3193 10 6 0.7015 -2.0916 4.5325 11 6 0.4221 -3.2248 5.2647 12 6 0.6962 -4.4794 4.6976 13 6 0.4401 -5.6834 5.3778 14 6 0.7406 -6.8548 4.7416 15 6 1.2840 -6.8297 3.4582 16 7 1.5217 -5.7033 2.8288 17 6 1.2458 -4.5267 3.3905 18 6 2.8800 -1.9429 -0.6295 19 6 2.0663 -0.7727 -1.2230 20 1 1.2397 -1.1507 -1.8247 21 6 2.9692 0.1286 -2.0676 22 7 3.3710 -0.5838 -3.2830 23 6 4.1856 0.0283 -4.1977 24 1 4.5323 1.0361 -4.0229 25 6 4.5668 -0.6469 -5.3491 26 7 4.1447 -1.8753 -5.5619 27 14 5.6787 0.1878 -6.5966 28 1 7.0977 -0.0928 -6.2608 29 1 5.3788 -0.3338 -7.9543 30 1 5.4434 1.6538 -6.5665 31 1 -0.3634 0.5026 0.8964 32 1 -0.3633 0.5250 -0.8834 33 1 -0.3634 -1.0276 -0.0130 34 1 2.9949 -0.3227 1.5797 35 1 1.3230 -0.7833 2.0221 36 1 0.4944 -1.1230 4.9631 37 1 0.0003 -3.1493 6.2561 38 1 0.0192 -5.6822 6.3724 39 1 0.5580 -7.7991 5.2331 40 1 1.5166 -7.7637 2.9684 41 1 2.7493 -2.8413 -1.2329 42 1 3.9357 -1.6785 -0.5667 43 1 2.4265 1.0339 -2.3396 44 1 3.8561 0.3955 -1.4928 45 1 3.0599 -1.4891 -3.4398 46 1 4.4107 -2.3470 -6.3666 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716985426.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:46 Heat of formation + Delta-G solvation = 66.077297 kcal Electronic energy + Delta-G solvation = -28975.768357 eV Core-core repulsion = 25059.440002 eV Total energy + Delta-G solvation = -3916.328356 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.64853 -39.74440 -38.32664 -37.62629 -34.53394 -34.05725 -32.63116 -31.82794 -31.27968 -30.86240 -28.90276 -26.52151 -25.97462 -25.12703 -24.45322 -23.62491 -22.78583 -21.13007 -20.03353 -19.60946 -18.90692 -17.87709 -17.47929 -16.90796 -16.41969 -15.86338 -15.56246 -15.14320 -14.97042 -14.79234 -14.50344 -14.23785 -13.87225 -13.77194 -13.51909 -13.34434 -13.09365 -13.00399 -12.87541 -12.76906 -12.68034 -12.20056 -11.87982 -11.54312 -11.16005 -11.14649 -11.06650 -10.78951 -10.53947 -10.38362 -10.20453 -10.15309 -10.00080 -9.83074 -9.73964 -9.56484 -9.27307 -8.84759 -8.80852 -8.36911 -6.84945 -5.68773 -2.97806 -0.42007 0.29405 1.30312 2.41318 2.93360 3.09447 3.48857 3.53414 3.55486 3.77184 3.82390 3.88910 4.03495 4.19584 4.31637 4.40381 4.63545 4.72139 4.79902 4.87140 4.96627 5.03147 5.12837 5.17447 5.20431 5.46821 5.54241 5.64457 5.66106 5.67315 5.72771 5.78834 5.83174 6.01444 6.09928 6.14470 6.21561 6.22670 6.25491 6.35349 6.41932 6.53146 6.70242 6.81845 6.96025 7.26228 7.57393 7.76379 7.77852 8.34379 8.49627 9.60634 10.18929 10.53377 11.53970 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.019222 B = 0.002470 C = 0.002246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1456.325912 B =11334.883463 C =12461.122641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.103 4.103 3 H 0.086 0.914 4 C 0.091 3.909 5 N -0.603 5.603 6 C 0.578 3.422 7 O -0.496 6.496 8 C 0.155 3.845 9 N -0.438 5.438 10 C 0.072 3.928 11 C -0.125 4.125 12 C -0.083 4.083 13 C -0.065 4.065 14 C -0.154 4.154 15 C 0.132 3.868 16 N -0.419 5.419 17 C 0.106 3.894 18 C 0.117 3.883 19 C -0.103 4.103 20 H 0.081 0.919 21 C 0.164 3.836 22 N -0.733 5.733 23 C -0.239 4.239 24 H 0.070 0.930 25 C -0.014 4.014 26 N -0.932 5.932 27 Si 0.906 3.094 28 H -0.290 1.290 29 H -0.292 1.292 30 H -0.282 1.282 31 H 0.052 0.948 32 H 0.057 0.943 33 H 0.050 0.950 34 H 0.065 0.935 35 H 0.117 0.883 36 H 0.167 0.833 37 H 0.146 0.854 38 H 0.145 0.855 39 H 0.144 0.856 40 H 0.166 0.834 41 H 0.084 0.916 42 H 0.078 0.922 43 H 0.022 0.978 44 H 0.021 0.979 45 H 0.384 0.616 46 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.651 -4.483 29.208 31.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.122 4.122 3 H 0.105 0.895 4 C -0.032 4.032 5 N -0.337 5.337 6 C 0.363 3.637 7 O -0.368 6.368 8 C 0.002 3.998 9 N -0.151 5.151 10 C -0.074 4.074 11 C -0.146 4.146 12 C -0.091 4.091 13 C -0.091 4.091 14 C -0.175 4.175 15 C -0.042 4.042 16 N -0.127 5.127 17 C -0.019 4.019 18 C -0.005 4.005 19 C -0.123 4.123 20 H 0.100 0.900 21 C 0.036 3.964 22 N -0.378 5.378 23 C -0.370 4.370 24 H 0.088 0.912 25 C -0.210 4.210 26 N -0.580 5.580 27 Si 0.738 3.262 28 H -0.218 1.218 29 H -0.218 1.218 30 H -0.208 1.208 31 H 0.071 0.929 32 H 0.076 0.924 33 H 0.069 0.931 34 H 0.084 0.916 35 H 0.135 0.865 36 H 0.184 0.816 37 H 0.163 0.837 38 H 0.163 0.837 39 H 0.162 0.838 40 H 0.184 0.816 41 H 0.103 0.897 42 H 0.097 0.903 43 H 0.040 0.960 44 H 0.039 0.961 45 H 0.218 0.782 46 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -10.916 -4.099 27.628 29.988 hybrid contribution -0.015 -0.588 0.615 0.851 sum -10.931 -4.686 28.243 30.645 Atomic orbital electron populations 1.21791 0.94750 1.01547 1.01372 1.22144 0.96016 0.99649 0.94440 0.89544 1.23008 1.01945 0.80562 0.97657 1.48896 1.61405 1.05481 1.17883 1.17118 0.79820 0.83089 0.83689 1.90895 1.50944 1.29666 1.65330 1.21568 0.96143 0.87070 0.95043 1.67552 1.09678 1.27279 1.10598 1.22688 0.95729 0.99147 0.89804 1.22365 0.99321 0.91747 1.01188 1.18975 0.99776 0.95395 0.94909 1.21416 0.96845 0.91025 0.99863 1.22151 0.99184 0.99569 0.96631 1.23379 0.92321 0.97075 0.91446 1.68347 1.13214 0.97015 1.34094 1.19461 0.97842 0.93304 0.91306 1.22538 0.97482 0.99256 0.81194 1.22393 0.98783 0.95485 0.95639 0.90039 1.20725 0.94412 0.93442 0.87840 1.42394 1.59106 1.16562 1.19699 1.19212 1.21420 0.97787 0.98611 0.91213 1.24747 1.01202 0.96452 0.98635 1.69663 1.49233 1.11193 1.27959 0.86200 0.80556 0.78448 0.81039 1.21769 1.21832 1.20820 0.92906 0.92390 0.93066 0.91642 0.86546 0.81584 0.83664 0.83715 0.83846 0.81640 0.89750 0.90343 0.95993 0.96112 0.78201 0.93518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.65 8.90 37.16 0.33 -1.32 16 2 C -0.10 -1.37 3.31 -89.22 -0.29 -1.66 16 3 H 0.09 1.07 7.72 -51.93 -0.40 0.67 16 4 C 0.09 1.20 6.08 -2.41 -0.01 1.18 16 5 N -0.60 -9.82 3.33 -170.15 -0.57 -10.39 16 6 C 0.58 10.13 7.91 -12.30 -0.10 10.03 16 7 O -0.50 -10.33 15.49 5.32 0.08 -10.25 16 8 C 0.15 2.23 6.79 -82.55 -0.56 1.67 16 9 N -0.44 -5.07 6.57 -9.55 -0.06 -5.13 16 10 C 0.07 0.57 11.12 -17.66 -0.20 0.37 16 11 C -0.13 -0.87 9.93 -38.94 -0.39 -1.25 16 12 C -0.08 -0.78 5.75 -106.79 -0.61 -1.40 16 13 C -0.07 -0.42 9.94 -39.25 -0.39 -0.81 16 14 C -0.15 -0.98 10.03 -39.73 -0.40 -1.38 16 15 C 0.13 1.25 11.14 -17.39 -0.19 1.06 16 16 N -0.42 -5.96 8.49 -10.75 -0.09 -6.05 16 17 C 0.11 1.42 6.61 -84.62 -0.56 0.86 16 18 C 0.12 2.10 6.42 -2.25 -0.01 2.09 16 19 C -0.10 -1.76 2.75 -89.21 -0.25 -2.00 16 20 H 0.08 1.48 7.71 -51.93 -0.40 1.08 16 21 C 0.16 3.31 5.38 -4.04 -0.02 3.29 16 22 N -0.73 -18.97 5.48 -59.91 -0.33 -19.30 16 23 C -0.24 -6.83 9.99 -15.06 -0.15 -6.98 16 24 H 0.07 1.92 7.83 -52.48 -0.41 1.51 16 25 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 26 N -0.93 -29.02 13.06 55.49 0.72 -28.29 16 27 Si 0.91 22.93 29.55 -169.99 -5.02 17.90 16 28 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 29 H -0.29 -7.44 7.11 56.52 0.40 -7.03 16 30 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 31 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 34 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.12 1.39 4.88 -51.93 -0.25 1.14 16 36 H 0.17 0.73 8.06 -52.49 -0.42 0.31 16 37 H 0.15 0.46 8.06 -52.48 -0.42 0.03 16 38 H 0.15 0.43 8.06 -52.49 -0.42 0.00 16 39 H 0.14 0.41 8.06 -52.49 -0.42 -0.02 16 40 H 0.17 1.13 8.06 -52.48 -0.42 0.71 16 41 H 0.08 1.71 7.89 -51.93 -0.41 1.30 16 42 H 0.08 1.47 7.75 -51.93 -0.40 1.06 16 43 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 44 H 0.02 0.42 7.98 -51.93 -0.41 0.01 16 45 H 0.38 10.56 7.61 -40.82 -0.31 10.24 16 46 H 0.25 7.68 8.31 -40.82 -0.34 7.34 16 LS Contribution 379.53 15.07 5.72 5.72 Total: -1.00 -36.76 379.53 -9.81 -46.58 By element: Atomic # 1 Polarization: 12.35 SS G_CDS: -6.37 Total: 5.98 kcal Atomic # 6 Polarization: 7.13 SS G_CDS: -3.90 Total: 3.23 kcal Atomic # 7 Polarization: -68.84 SS G_CDS: -0.32 Total: -69.16 kcal Atomic # 8 Polarization: -10.33 SS G_CDS: 0.08 Total: -10.25 kcal Atomic # 14 Polarization: 22.93 SS G_CDS: -5.02 Total: 17.90 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -36.76 -9.81 -46.58 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716985426.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.653 kcal (2) G-P(sol) polarization free energy of solvation -36.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.576 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds