Wall clock time and date at job start Sat Apr 11 2020 06:05:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 110.64220 * 2 1 4 4 C 1.54325 * 110.72058 * 236.86088 * 2 1 3 5 5 N 1.47022 * 107.26808 * 263.83024 * 4 2 1 6 6 C 1.34777 * 125.64649 * 181.01926 * 5 4 2 7 7 O 1.21553 * 119.99924 * 180.02562 * 6 5 4 8 8 C 1.47895 * 119.99912 * 0.30519 * 6 5 4 9 9 N 1.32135 * 120.03416 * 359.71875 * 8 6 5 10 10 C 1.31974 * 122.76908 * 179.97438 * 9 8 6 11 11 C 1.37775 * 121.73080 * 0.02562 * 10 9 8 12 12 C 1.40387 * 118.72787 * 359.97438 * 11 10 9 13 13 C 1.40645 * 122.27858 * 180.02562 * 12 11 10 14 14 C 1.36647 * 117.95230 * 179.20985 * 13 12 11 15 15 C 1.39395 * 119.91982 * 0.76004 * 14 13 12 16 16 N 1.31208 * 121.85448 * 359.48775 * 15 14 13 17 17 C 1.33251 * 121.22627 * 359.97438 * 16 15 14 18 18 C 1.47427 * 108.70606 * 1.28821 * 5 4 2 19 19 C 1.55122 * 104.71913 * 335.55290 * 18 5 4 20 20 H 1.09001 * 111.22820 * 279.17858 * 19 18 5 21 21 C 1.53004 * 110.90775 * 155.27691 * 19 18 5 22 22 N 1.46498 * 109.47095 * 72.97497 * 21 19 18 23 23 C 1.36935 * 120.00025 * 180.02562 * 22 21 19 24 24 H 1.07997 * 120.00088 * 359.97438 * 23 22 21 25 25 C 1.38813 * 120.00338 * 179.97438 * 23 22 21 26 26 N 1.31626 * 119.99799 * 359.97438 * 25 23 22 27 27 Si 1.86801 * 120.00196 * 179.97438 * 25 23 22 28 28 H 1.48498 * 109.47259 * 60.00137 * 27 25 23 29 29 H 1.48504 * 109.46959 * 179.97438 * 27 25 23 30 30 H 1.48495 * 109.47128 * 299.99682 * 27 25 23 31 31 H 1.09001 * 109.47097 * 181.68880 * 1 2 3 32 32 H 1.09005 * 109.47024 * 301.68838 * 1 2 3 33 33 H 1.09001 * 109.46684 * 61.68181 * 1 2 3 34 34 H 1.08992 * 109.88157 * 144.41232 * 4 2 1 35 35 H 1.09001 * 110.01111 * 23.31516 * 4 2 1 36 36 H 1.08003 * 119.13472 * 180.02562 * 10 9 8 37 37 H 1.08007 * 120.63933 * 179.97438 * 11 10 9 38 38 H 1.08000 * 121.02056 * 359.95589 * 13 12 11 39 39 H 1.08001 * 120.04309 * 180.22285 * 14 13 12 40 40 H 1.08004 * 119.07685 * 179.46907 * 15 14 13 41 41 H 1.09001 * 110.36625 * 94.47869 * 18 5 4 42 42 H 1.08998 * 110.36643 * 216.80556 * 18 5 4 43 43 H 1.09002 * 109.47013 * 192.97377 * 21 19 18 44 44 H 1.09002 * 109.47092 * 312.97260 * 21 19 18 45 45 H 0.97004 * 120.00319 * 359.97438 * 22 21 19 46 46 H 0.96992 * 120.00112 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9143 1.0200 0.0000 4 6 2.0761 -0.7891 -1.2087 5 7 2.3716 -2.1518 -0.7427 6 6 2.8849 -3.1452 -1.4952 7 8 3.0888 -4.2376 -1.0025 8 6 3.2059 -2.9044 -2.9186 9 7 2.9844 -1.7172 -3.4548 10 6 3.2509 -1.4429 -4.7180 11 6 3.7825 -2.3879 -5.5680 12 6 4.0449 -3.6734 -5.0686 13 6 4.5871 -4.6942 -5.8698 14 6 4.8223 -5.9082 -5.2883 15 6 4.5102 -6.1075 -3.9444 16 7 3.9995 -5.1529 -3.2032 17 6 3.7558 -3.9433 -3.7061 18 6 2.0075 -2.2537 0.6823 19 6 2.0789 -0.7976 1.2124 20 1 3.1059 -0.5093 1.4370 21 6 1.1815 -0.6183 2.4385 22 7 1.7913 -1.2849 3.5917 23 6 1.1637 -1.2587 4.8085 24 1 0.2194 -0.7462 4.9182 25 6 1.7413 -1.8907 5.9012 26 7 2.8919 -2.5157 5.7675 27 14 0.8855 -1.8543 7.5612 28 1 -0.4508 -2.4913 7.4434 29 1 1.7014 -2.5971 8.5551 30 1 0.7253 -0.4462 8.0048 31 1 -0.3633 -1.0272 0.0303 32 1 -0.3633 0.5399 0.8745 33 1 -0.3633 0.4875 -0.9047 34 1 2.9868 -0.3179 -1.5781 35 1 1.3283 -0.8223 -2.0010 36 1 3.0468 -0.4517 -5.0952 37 1 3.9933 -2.1443 -6.5990 38 1 4.8219 -4.5203 -6.9095 39 1 5.2414 -6.7149 -5.8713 40 1 4.6937 -7.0750 -3.5008 41 1 0.9973 -2.6493 0.7883 42 1 2.7207 -2.8852 1.2119 43 1 1.0663 0.4444 2.6521 44 1 0.2036 -1.0571 2.2403 45 1 2.6393 -1.7455 3.4933 46 1 3.2953 -2.9577 6.5308 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716985427.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:49 Heat of formation + Delta-G solvation = 63.420156 kcal Electronic energy + Delta-G solvation = -28941.886678 eV Core-core repulsion = 25025.443099 eV Total energy + Delta-G solvation = -3916.443578 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.62709 -39.85850 -38.33243 -37.68074 -34.57060 -34.03818 -32.75781 -31.80055 -31.05202 -30.85133 -28.84838 -26.63069 -25.95083 -25.15269 -24.42717 -23.67078 -22.69039 -21.55817 -20.00109 -19.10542 -18.86869 -17.85732 -17.51332 -16.88316 -16.48704 -15.94288 -15.52705 -15.21380 -14.98182 -14.74338 -14.62033 -14.32019 -13.91315 -13.67164 -13.50723 -13.35581 -13.12063 -12.99456 -12.78881 -12.62272 -12.41430 -12.24716 -12.07095 -11.60156 -11.44934 -11.14359 -10.94667 -10.76517 -10.52174 -10.29590 -10.21440 -10.18627 -10.06463 -9.87154 -9.71784 -9.59001 -9.31661 -8.82395 -8.79332 -8.31480 -6.84337 -5.68257 -2.97235 -0.39895 0.31860 1.32196 2.44052 2.96662 3.10006 3.49679 3.53634 3.55085 3.79912 3.83978 3.90634 4.05291 4.21192 4.33279 4.41995 4.62699 4.71940 4.74595 4.84710 4.98906 5.01533 5.11514 5.16916 5.22725 5.47574 5.48613 5.62721 5.65803 5.67760 5.70486 5.80174 5.88946 6.02782 6.08014 6.10535 6.18122 6.21145 6.28984 6.33886 6.47229 6.54694 6.61074 6.79489 6.94087 7.30172 7.58596 7.72689 7.76315 8.34674 8.50208 9.61052 10.19355 10.53601 11.54464 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.017936 B = 0.002500 C = 0.002238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1560.756776 B =11196.995120 C =12506.609215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.103 4.103 3 H 0.087 0.913 4 C 0.123 3.877 5 N -0.599 5.599 6 C 0.571 3.429 7 O -0.494 6.494 8 C 0.151 3.849 9 N -0.438 5.438 10 C 0.073 3.927 11 C -0.126 4.126 12 C -0.085 4.085 13 C -0.065 4.065 14 C -0.155 4.155 15 C 0.132 3.868 16 N -0.419 5.419 17 C 0.107 3.893 18 C 0.118 3.882 19 C -0.101 4.101 20 H 0.085 0.915 21 C 0.166 3.834 22 N -0.733 5.733 23 C -0.240 4.240 24 H 0.069 0.931 25 C -0.014 4.014 26 N -0.932 5.932 27 Si 0.907 3.093 28 H -0.286 1.286 29 H -0.292 1.292 30 H -0.287 1.287 31 H 0.056 0.944 32 H 0.065 0.935 33 H 0.051 0.949 34 H 0.071 0.929 35 H 0.072 0.928 36 H 0.166 0.834 37 H 0.145 0.855 38 H 0.145 0.855 39 H 0.144 0.856 40 H 0.166 0.834 41 H 0.072 0.928 42 H 0.083 0.917 43 H 0.023 0.977 44 H 0.025 0.975 45 H 0.384 0.616 46 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.699 0.493 -30.818 30.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.122 4.122 3 H 0.105 0.895 4 C 0.000 4.000 5 N -0.333 5.333 6 C 0.356 3.644 7 O -0.366 6.366 8 C -0.002 4.002 9 N -0.151 5.151 10 C -0.073 4.073 11 C -0.146 4.146 12 C -0.092 4.092 13 C -0.091 4.091 14 C -0.176 4.176 15 C -0.042 4.042 16 N -0.127 5.127 17 C -0.018 4.018 18 C -0.003 4.003 19 C -0.121 4.121 20 H 0.103 0.897 21 C 0.038 3.962 22 N -0.378 5.378 23 C -0.371 4.371 24 H 0.087 0.913 25 C -0.210 4.210 26 N -0.581 5.581 27 Si 0.738 3.262 28 H -0.213 1.213 29 H -0.217 1.217 30 H -0.213 1.213 31 H 0.075 0.925 32 H 0.084 0.916 33 H 0.070 0.930 34 H 0.090 0.910 35 H 0.090 0.910 36 H 0.183 0.817 37 H 0.163 0.837 38 H 0.163 0.837 39 H 0.161 0.839 40 H 0.183 0.817 41 H 0.090 0.910 42 H 0.102 0.898 43 H 0.041 0.959 44 H 0.043 0.957 45 H 0.218 0.782 46 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 2.130 0.538 -29.082 29.165 hybrid contribution 0.481 -0.593 -0.717 1.047 sum 2.611 -0.056 -29.799 29.913 Atomic orbital electron populations 1.21829 0.94297 1.02233 1.01624 1.22295 0.96504 0.99252 0.94194 0.89472 1.22164 1.00520 0.81336 0.95967 1.48385 1.61410 1.11691 1.11846 1.17204 0.79329 0.84025 0.83816 1.90900 1.51635 1.22705 1.71393 1.21526 0.95676 0.88097 0.94916 1.67663 1.13989 1.19632 1.13841 1.22647 0.96135 1.00085 0.88459 1.22375 0.98483 0.92318 1.01462 1.18974 1.00072 0.95746 0.94393 1.21415 0.95596 0.92200 0.99921 1.22148 1.00220 0.98348 0.96884 1.23378 0.91859 0.98526 0.90453 1.68338 1.08954 0.98999 1.36409 1.19474 0.98418 0.93166 0.90785 1.22411 1.01251 0.97964 0.78721 1.22649 1.01112 0.93478 0.94846 0.89692 1.20636 0.94180 0.95868 0.85519 1.42393 1.25654 1.64433 1.05293 1.19161 1.02971 1.28291 0.86655 0.91263 1.24748 0.97332 1.00824 0.98094 1.69654 1.18139 1.39945 1.30333 0.86274 0.78533 0.77352 0.84055 1.21307 1.21743 1.21339 0.92468 0.91642 0.92995 0.91030 0.90995 0.81656 0.83700 0.83743 0.83864 0.81652 0.90981 0.89808 0.95908 0.95715 0.78248 0.93475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.73 7.91 37.16 0.29 -1.44 16 2 C -0.10 -1.33 3.47 -88.78 -0.31 -1.64 16 3 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 4 C 0.12 1.60 4.98 -3.06 -0.02 1.58 16 5 N -0.60 -9.75 3.32 -171.48 -0.57 -10.32 16 6 C 0.57 10.09 7.84 -12.31 -0.10 9.99 16 7 O -0.49 -10.37 15.47 5.32 0.08 -10.29 16 8 C 0.15 2.21 6.78 -82.55 -0.56 1.65 16 9 N -0.44 -5.19 6.81 -9.55 -0.07 -5.25 16 10 C 0.07 0.60 11.12 -17.66 -0.20 0.40 16 11 C -0.13 -0.90 9.93 -38.94 -0.39 -1.29 16 12 C -0.08 -0.82 5.75 -106.79 -0.61 -1.43 16 13 C -0.07 -0.44 9.94 -39.25 -0.39 -0.83 16 14 C -0.15 -1.02 10.03 -39.73 -0.40 -1.42 16 15 C 0.13 1.28 11.14 -17.39 -0.19 1.09 16 16 N -0.42 -6.06 8.49 -10.75 -0.09 -6.15 16 17 C 0.11 1.45 6.61 -84.62 -0.56 0.89 16 18 C 0.12 2.11 6.01 -2.41 -0.01 2.10 16 19 C -0.10 -1.69 2.93 -88.35 -0.26 -1.95 16 20 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 21 C 0.17 3.32 4.54 -4.04 -0.02 3.30 16 22 N -0.73 -18.93 5.55 -59.91 -0.33 -19.26 16 23 C -0.24 -6.83 9.99 -15.06 -0.15 -6.99 16 24 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 25 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 26 N -0.93 -29.02 13.06 55.49 0.72 -28.30 16 27 Si 0.91 22.93 29.55 -169.99 -5.02 17.91 16 28 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 29 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 30 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 31 H 0.06 0.76 7.32 -51.93 -0.38 0.38 16 32 H 0.06 0.82 7.12 -51.93 -0.37 0.45 16 33 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.07 0.89 7.42 -51.93 -0.39 0.51 16 35 H 0.07 0.87 7.26 -51.93 -0.38 0.50 16 36 H 0.17 0.78 8.06 -52.48 -0.42 0.36 16 37 H 0.15 0.49 8.06 -52.48 -0.42 0.07 16 38 H 0.14 0.46 8.06 -52.49 -0.42 0.03 16 39 H 0.14 0.44 8.06 -52.49 -0.42 0.01 16 40 H 0.17 1.17 8.06 -52.48 -0.42 0.74 16 41 H 0.07 1.32 7.46 -51.93 -0.39 0.94 16 42 H 0.08 1.72 8.03 -51.93 -0.42 1.30 16 43 H 0.02 0.46 8.05 -51.93 -0.42 0.04 16 44 H 0.03 0.50 6.94 -51.93 -0.36 0.14 16 45 H 0.38 10.53 7.67 -40.82 -0.31 10.22 16 46 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 LS Contribution 376.18 15.07 5.67 5.67 Total: -1.00 -36.70 376.18 -9.91 -46.61 By element: Atomic # 1 Polarization: 12.19 SS G_CDS: -6.34 Total: 5.86 kcal Atomic # 6 Polarization: 7.49 SS G_CDS: -3.96 Total: 3.52 kcal Atomic # 7 Polarization: -68.95 SS G_CDS: -0.33 Total: -69.28 kcal Atomic # 8 Polarization: -10.37 SS G_CDS: 0.08 Total: -10.29 kcal Atomic # 14 Polarization: 22.93 SS G_CDS: -5.02 Total: 17.91 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -36.70 -9.91 -46.61 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716985427.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.030 kcal (2) G-P(sol) polarization free energy of solvation -36.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.610 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds