Wall clock time and date at job start Sat Apr 11 2020 06:05:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 110.64220 * 2 1 4 4 C 1.54325 * 110.72058 * 236.86088 * 2 1 3 5 5 N 1.47022 * 107.26808 * 263.83024 * 4 2 1 6 6 C 1.34777 * 125.64649 * 181.01926 * 5 4 2 7 7 O 1.21553 * 119.99924 * 180.02562 * 6 5 4 8 8 C 1.47895 * 119.99912 * 0.30519 * 6 5 4 9 9 N 1.32135 * 120.03416 * 359.71875 * 8 6 5 10 10 C 1.31974 * 122.76908 * 179.97438 * 9 8 6 11 11 C 1.37775 * 121.73080 * 0.02562 * 10 9 8 12 12 C 1.40387 * 118.72787 * 359.97438 * 11 10 9 13 13 C 1.40645 * 122.27858 * 180.02562 * 12 11 10 14 14 C 1.36647 * 117.95230 * 179.20985 * 13 12 11 15 15 C 1.39395 * 119.91982 * 0.76004 * 14 13 12 16 16 N 1.31208 * 121.85448 * 359.48775 * 15 14 13 17 17 C 1.33251 * 121.22627 * 359.97438 * 16 15 14 18 18 C 1.47427 * 108.70606 * 1.28821 * 5 4 2 19 19 C 1.55122 * 104.71913 * 335.55290 * 18 5 4 20 20 H 1.09001 * 111.22820 * 279.17858 * 19 18 5 21 21 C 1.53004 * 110.90775 * 155.27691 * 19 18 5 22 22 N 1.46498 * 109.47095 * 72.97497 * 21 19 18 23 23 C 1.36935 * 120.00025 * 180.02562 * 22 21 19 24 24 H 1.07997 * 120.00088 * 359.97438 * 23 22 21 25 25 C 1.38813 * 120.00338 * 179.97438 * 23 22 21 26 26 N 1.31626 * 119.99799 * 359.97438 * 25 23 22 27 27 Si 1.86801 * 120.00196 * 179.97438 * 25 23 22 28 28 H 1.48498 * 109.47259 * 60.00137 * 27 25 23 29 29 H 1.48504 * 109.46959 * 179.97438 * 27 25 23 30 30 H 1.48495 * 109.47128 * 299.99682 * 27 25 23 31 31 H 1.09001 * 109.47097 * 181.68880 * 1 2 3 32 32 H 1.09005 * 109.47024 * 301.68838 * 1 2 3 33 33 H 1.09001 * 109.46684 * 61.68181 * 1 2 3 34 34 H 1.08992 * 109.88157 * 144.41232 * 4 2 1 35 35 H 1.09001 * 110.01111 * 23.31516 * 4 2 1 36 36 H 1.08003 * 119.13472 * 180.02562 * 10 9 8 37 37 H 1.08007 * 120.63933 * 179.97438 * 11 10 9 38 38 H 1.08000 * 121.02056 * 359.95589 * 13 12 11 39 39 H 1.08001 * 120.04309 * 180.22285 * 14 13 12 40 40 H 1.08004 * 119.07685 * 179.46907 * 15 14 13 41 41 H 1.09001 * 110.36625 * 94.47869 * 18 5 4 42 42 H 1.08998 * 110.36643 * 216.80556 * 18 5 4 43 43 H 1.09002 * 109.47013 * 192.97377 * 21 19 18 44 44 H 1.09002 * 109.47092 * 312.97260 * 21 19 18 45 45 H 0.97004 * 120.00319 * 359.97438 * 22 21 19 46 46 H 0.96992 * 120.00112 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9143 1.0200 0.0000 4 6 2.0761 -0.7891 -1.2087 5 7 2.3716 -2.1518 -0.7427 6 6 2.8849 -3.1452 -1.4952 7 8 3.0888 -4.2376 -1.0025 8 6 3.2059 -2.9044 -2.9186 9 7 2.9844 -1.7172 -3.4548 10 6 3.2509 -1.4429 -4.7180 11 6 3.7825 -2.3879 -5.5680 12 6 4.0449 -3.6734 -5.0686 13 6 4.5871 -4.6942 -5.8698 14 6 4.8223 -5.9082 -5.2883 15 6 4.5102 -6.1075 -3.9444 16 7 3.9995 -5.1529 -3.2032 17 6 3.7558 -3.9433 -3.7061 18 6 2.0075 -2.2537 0.6823 19 6 2.0789 -0.7976 1.2124 20 1 3.1059 -0.5093 1.4370 21 6 1.1815 -0.6183 2.4385 22 7 1.7913 -1.2849 3.5917 23 6 1.1637 -1.2587 4.8085 24 1 0.2194 -0.7462 4.9182 25 6 1.7413 -1.8907 5.9012 26 7 2.8919 -2.5157 5.7675 27 14 0.8855 -1.8543 7.5612 28 1 -0.4508 -2.4913 7.4434 29 1 1.7014 -2.5971 8.5551 30 1 0.7253 -0.4462 8.0048 31 1 -0.3633 -1.0272 0.0303 32 1 -0.3633 0.5399 0.8745 33 1 -0.3633 0.4875 -0.9047 34 1 2.9868 -0.3179 -1.5781 35 1 1.3283 -0.8223 -2.0010 36 1 3.0468 -0.4517 -5.0952 37 1 3.9933 -2.1443 -6.5990 38 1 4.8219 -4.5203 -6.9095 39 1 5.2414 -6.7149 -5.8713 40 1 4.6937 -7.0750 -3.5008 41 1 0.9973 -2.6493 0.7883 42 1 2.7207 -2.8852 1.2119 43 1 1.0663 0.4444 2.6521 44 1 0.2036 -1.0571 2.2403 45 1 2.6393 -1.7455 3.4933 46 1 3.2953 -2.9577 6.5308 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716985427.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:48 Heat of formation + Delta-G solvation = 37.555331 kcal Electronic energy + Delta-G solvation = -28943.008260 eV Core-core repulsion = 25025.443099 eV Total energy + Delta-G solvation = -3917.565161 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.39506 -41.05854 -39.20075 -38.88981 -36.43519 -34.79353 -34.21348 -32.83653 -32.49645 -31.64970 -30.40086 -27.79925 -27.26533 -26.27218 -25.14446 -25.05328 -23.99449 -22.93051 -20.98480 -20.49945 -19.73678 -19.07886 -18.59603 -18.18500 -17.52434 -17.18396 -16.68836 -16.55544 -16.16173 -15.69272 -15.53039 -15.38687 -15.23212 -15.19428 -14.71078 -14.48871 -14.10550 -14.06258 -14.00011 -13.76222 -13.59787 -13.45687 -13.11427 -12.99049 -12.95573 -12.71794 -12.62621 -12.20771 -11.88583 -11.83473 -11.65589 -11.53830 -11.49385 -11.29340 -10.90798 -10.81534 -10.38668 -10.17599 -9.73111 -9.43108 -8.99223 -7.93619 -5.23285 -1.12574 -0.33868 0.63070 1.46181 1.50581 1.56485 1.62649 1.80112 2.13116 2.56587 2.95206 3.04017 3.18458 3.36284 3.39399 3.49335 3.60982 3.66328 3.73543 3.85287 3.92664 4.11201 4.22022 4.27246 4.28825 4.35144 4.47011 4.54896 4.58369 4.60848 4.64576 4.79206 4.81638 4.84706 4.94778 5.00505 5.05142 5.09542 5.18260 5.23405 5.29112 5.33044 5.39802 5.50303 5.53040 5.61592 6.27634 6.42823 6.58308 6.90641 7.10558 7.33155 8.09684 8.31910 9.30137 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.017936 B = 0.002500 C = 0.002238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1560.756776 B =11196.995120 C =12506.609215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.090 4.090 3 H 0.115 0.885 4 C 0.129 3.871 5 N -0.602 5.602 6 C 0.562 3.438 7 O -0.549 6.549 8 C 0.099 3.901 9 N -0.438 5.438 10 C 0.055 3.945 11 C -0.086 4.086 12 C -0.105 4.105 13 C -0.048 4.048 14 C -0.154 4.154 15 C 0.126 3.874 16 N -0.493 5.493 17 C 0.083 3.917 18 C 0.124 3.876 19 C -0.093 4.093 20 H 0.074 0.926 21 C 0.168 3.832 22 N -0.749 5.749 23 C -0.244 4.244 24 H 0.080 0.920 25 C -0.081 4.081 26 N -0.973 5.973 27 Si 0.977 3.023 28 H -0.278 1.278 29 H -0.297 1.297 30 H -0.273 1.273 31 H 0.038 0.962 32 H 0.063 0.937 33 H 0.082 0.918 34 H 0.081 0.919 35 H 0.087 0.913 36 H 0.207 0.793 37 H 0.199 0.801 38 H 0.195 0.805 39 H 0.186 0.814 40 H 0.177 0.823 41 H 0.060 0.940 42 H 0.041 0.959 43 H 0.036 0.964 44 H 0.028 0.972 45 H 0.370 0.630 46 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.340 2.681 -35.400 35.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.109 4.109 3 H 0.133 0.867 4 C 0.008 3.992 5 N -0.335 5.335 6 C 0.350 3.650 7 O -0.426 6.426 8 C -0.051 4.051 9 N -0.151 5.151 10 C -0.092 4.092 11 C -0.106 4.106 12 C -0.112 4.112 13 C -0.073 4.073 14 C -0.175 4.175 15 C -0.047 4.047 16 N -0.202 5.202 17 C -0.042 4.042 18 C 0.001 3.999 19 C -0.112 4.112 20 H 0.093 0.907 21 C 0.042 3.958 22 N -0.391 5.391 23 C -0.375 4.375 24 H 0.098 0.902 25 C -0.273 4.273 26 N -0.624 5.624 27 Si 0.806 3.194 28 H -0.204 1.204 29 H -0.224 1.224 30 H -0.199 1.199 31 H 0.057 0.943 32 H 0.082 0.918 33 H 0.101 0.899 34 H 0.100 0.900 35 H 0.105 0.895 36 H 0.224 0.776 37 H 0.216 0.784 38 H 0.212 0.788 39 H 0.203 0.797 40 H 0.194 0.806 41 H 0.078 0.922 42 H 0.060 0.940 43 H 0.054 0.946 44 H 0.046 0.954 45 H 0.201 0.799 46 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 1.726 2.778 -33.690 33.849 hybrid contribution 0.632 -1.301 0.455 1.516 sum 2.358 1.477 -33.236 33.352 Atomic orbital electron populations 1.21823 0.93321 1.01474 1.03118 1.22337 0.97195 0.99857 0.91491 0.86666 1.22300 1.01380 0.79367 0.96156 1.48483 1.61204 1.13015 1.10799 1.17928 0.78233 0.83352 0.85525 1.90833 1.53957 1.24805 1.72995 1.20923 1.00602 0.90270 0.93348 1.67506 1.13365 1.18320 1.15890 1.23396 0.96367 1.02219 0.87239 1.23004 0.93981 0.90303 1.03320 1.19374 1.00873 0.97989 0.93007 1.22016 0.92893 0.90866 1.01537 1.22516 0.99639 0.99923 0.95421 1.23865 0.90442 0.98169 0.92213 1.68243 1.12274 1.00640 1.39070 1.19660 0.99018 0.92749 0.92732 1.22129 0.99265 0.98221 0.80269 1.22480 1.00169 0.93337 0.95234 0.90746 1.20775 0.94473 0.95652 0.84900 1.42664 1.25303 1.64802 1.06376 1.19638 1.03088 1.27164 0.87638 0.90197 1.25653 0.98282 1.01251 1.02093 1.69845 1.20012 1.41540 1.31032 0.85158 0.77377 0.77748 0.79167 1.20404 1.22385 1.19926 0.94263 0.91810 0.89928 0.90033 0.89504 0.77596 0.78423 0.78803 0.79712 0.80587 0.92155 0.94003 0.94623 0.95393 0.79856 0.94123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.18 7.91 71.98 0.57 -2.61 16 2 C -0.09 -2.21 3.47 -9.60 -0.03 -2.25 16 3 H 0.12 2.29 8.14 -2.39 -0.02 2.27 16 4 C 0.13 3.31 4.98 86.73 0.43 3.75 16 5 N -0.60 -21.13 3.32 -814.70 -2.71 -23.84 16 6 C 0.56 21.95 7.84 86.80 0.68 22.63 16 7 O -0.55 -26.15 15.47 -3.88 -0.06 -26.21 16 8 C 0.10 3.05 6.78 42.46 0.29 3.34 16 9 N -0.44 -9.94 6.81 -184.13 -1.25 -11.20 16 10 C 0.06 0.71 11.12 84.56 0.94 1.65 16 11 C -0.09 -0.81 9.93 22.68 0.23 -0.59 16 12 C -0.11 -1.75 5.75 -21.27 -0.12 -1.87 16 13 C -0.05 -0.43 9.94 22.49 0.22 -0.21 16 14 C -0.15 -1.60 10.03 22.18 0.22 -1.38 16 15 C 0.13 2.53 11.14 85.06 0.95 3.48 16 16 N -0.49 -15.48 8.49 -187.91 -1.60 -17.07 16 17 C 0.08 2.33 6.61 40.63 0.27 2.60 16 18 C 0.12 4.89 6.01 86.93 0.52 5.41 16 19 C -0.09 -3.23 2.93 -9.33 -0.03 -3.25 16 20 H 0.07 2.75 8.14 -2.39 -0.02 2.73 16 21 C 0.17 6.89 4.54 86.38 0.39 7.29 16 22 N -0.75 -40.27 5.55 -343.45 -1.91 -42.18 16 23 C -0.24 -14.17 9.99 84.03 0.84 -13.33 16 24 H 0.08 4.38 7.83 -2.91 -0.02 4.36 16 25 C -0.08 -4.88 5.50 84.86 0.47 -4.41 16 26 N -0.97 -63.14 13.06 21.65 0.28 -62.86 16 27 Si 0.98 48.08 29.55 68.60 2.03 50.11 16 28 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 29 H -0.30 -14.80 7.11 99.48 0.71 -14.09 16 30 H -0.27 -12.75 7.11 99.48 0.71 -12.05 16 31 H 0.04 1.03 7.32 -2.39 -0.02 1.01 16 32 H 0.06 1.48 7.12 -2.38 -0.02 1.46 16 33 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 34 H 0.08 1.95 7.42 -2.39 -0.02 1.93 16 35 H 0.09 1.99 7.26 -2.39 -0.02 1.97 16 36 H 0.21 0.82 8.06 -2.91 -0.02 0.80 16 37 H 0.20 -0.23 8.06 -2.91 -0.02 -0.25 16 38 H 0.19 -0.19 8.06 -2.91 -0.02 -0.21 16 39 H 0.19 0.29 8.06 -2.91 -0.02 0.27 16 40 H 0.18 2.70 8.06 -2.91 -0.02 2.68 16 41 H 0.06 2.46 7.46 -2.39 -0.02 2.44 16 42 H 0.04 1.96 8.03 -2.39 -0.02 1.94 16 43 H 0.04 1.40 8.05 -2.39 -0.02 1.38 16 44 H 0.03 1.15 6.94 -2.39 -0.02 1.13 16 45 H 0.37 21.66 7.67 -92.71 -0.71 20.95 16 46 H 0.25 15.75 8.31 -92.71 -0.77 14.98 16 Total: -1.00 -90.32 376.18 1.92 -88.40 By element: Atomic # 1 Polarization: 24.32 SS G_CDS: 0.30 Total: 24.62 kcal Atomic # 6 Polarization: 13.40 SS G_CDS: 6.84 Total: 20.23 kcal Atomic # 7 Polarization: -149.97 SS G_CDS: -7.18 Total: -157.15 kcal Atomic # 8 Polarization: -26.15 SS G_CDS: -0.06 Total: -26.21 kcal Atomic # 14 Polarization: 48.08 SS G_CDS: 2.03 Total: 50.11 kcal Total: -90.32 1.92 -88.40 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716985427.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.955 kcal (2) G-P(sol) polarization free energy of solvation -90.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.399 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds