Wall clock time and date at job start Sat Apr 11 2020 06:05:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08996 * 110.64336 * 2 1 4 4 C 1.54325 * 110.72263 * 123.14275 * 2 1 3 5 5 N 1.47018 * 107.27005 * 140.55348 * 4 2 1 6 6 C 1.34784 * 125.64881 * 181.02407 * 5 4 2 7 7 O 1.21484 * 119.99999 * 180.02562 * 6 5 4 8 8 C 1.48375 * 119.99498 * 0.02688 * 6 5 4 9 9 C 1.40213 * 119.21540 * 179.97438 * 8 6 5 10 10 C 1.36646 * 119.90658 * 179.71861 * 9 8 6 11 11 C 1.40560 * 118.10675 * 0.28458 * 10 9 8 12 12 C 1.40399 * 122.05809 * 179.97438 * 11 10 9 13 13 N 1.31253 * 119.86979 * 180.02562 * 12 11 10 14 14 C 1.32596 * 122.68269 * 359.97438 * 13 12 11 15 15 C 1.36099 * 121.99490 * 359.97438 * 14 13 12 16 16 C 1.40948 * 118.77095 * 359.97438 * 15 14 13 17 17 N 1.31982 * 119.22442 * 0.29951 * 8 6 5 18 18 C 1.47426 * 108.70488 * 1.28990 * 5 4 2 19 19 C 1.55127 * 104.72111 * 335.54848 * 18 5 4 20 20 H 1.08993 * 111.22926 * 279.17720 * 19 18 5 21 21 C 1.53003 * 110.90504 * 155.27461 * 19 18 5 22 22 N 1.46492 * 109.47228 * 72.97740 * 21 19 18 23 23 C 1.36934 * 120.00502 * 179.97438 * 22 21 19 24 24 H 1.08009 * 119.99664 * 0.02562 * 23 22 21 25 25 C 1.38806 * 120.00382 * 180.02562 * 23 22 21 26 26 N 1.31618 * 120.00214 * 0.02562 * 25 23 22 27 27 Si 1.86807 * 120.00192 * 180.02562 * 25 23 22 28 28 H 1.48508 * 109.46719 * 60.00101 * 27 25 23 29 29 H 1.48496 * 109.47362 * 180.02562 * 27 25 23 30 30 H 1.48497 * 109.47040 * 300.00443 * 27 25 23 31 31 H 1.08999 * 109.46948 * 298.31077 * 1 2 3 32 32 H 1.08997 * 109.47505 * 58.30984 * 1 2 3 33 33 H 1.08997 * 109.46926 * 178.31163 * 1 2 3 34 34 H 1.09005 * 109.87981 * 21.14253 * 4 2 1 35 35 H 1.08993 * 110.01319 * 260.04363 * 4 2 1 36 36 H 1.08002 * 120.05004 * 0.02562 * 9 8 6 37 37 H 1.08001 * 120.94721 * 180.29915 * 10 9 8 38 38 H 1.08001 * 120.06627 * 0.03880 * 12 11 10 39 39 H 1.07997 * 118.99918 * 179.97438 * 14 13 12 40 40 H 1.08003 * 120.61264 * 180.02562 * 15 14 13 41 41 H 1.08996 * 110.37034 * 94.48213 * 18 5 4 42 42 H 1.09005 * 110.36458 * 216.80390 * 18 5 4 43 43 H 1.09001 * 109.47412 * 192.98208 * 21 19 18 44 44 H 1.09005 * 109.46828 * 312.97870 * 21 19 18 45 45 H 0.97003 * 119.99793 * 359.97438 * 22 21 19 46 46 H 0.97005 * 120.00196 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0200 0.0000 4 6 2.0760 -0.7892 1.2086 5 7 3.2445 -1.5495 0.7415 6 6 3.9924 -2.3811 1.4936 7 8 4.9399 -2.9596 1.0003 8 6 3.6582 -2.5902 2.9241 9 6 4.4469 -3.4593 3.6912 10 6 4.1553 -3.6578 5.0114 11 6 3.0537 -2.9756 5.5561 12 6 2.6796 -3.1187 6.9017 13 7 1.6425 -2.4612 7.3653 14 6 0.9135 -1.6500 6.6112 15 6 1.1938 -1.4423 5.2957 16 6 2.2938 -2.1118 4.7225 17 7 2.6218 -1.9586 3.4427 18 6 3.4665 -1.2467 -0.6841 19 6 2.0789 -0.7975 -1.2125 20 1 1.4447 -1.6556 -1.4352 21 6 2.2277 0.1039 -2.4398 22 7 2.6327 -0.7039 -3.5928 23 6 2.8279 -0.1094 -4.8108 24 1 2.6836 0.9553 -4.9213 25 6 3.2111 -0.8750 -5.9034 26 7 3.3865 -2.1724 -5.7689 27 14 3.4781 -0.0637 -7.5648 28 1 4.5488 0.9589 -7.4500 29 1 3.8791 -1.0915 -8.5588 30 1 2.2181 0.5863 -8.0064 31 1 -0.3633 0.4874 0.9047 32 1 -0.3634 0.5398 -0.8744 33 1 -0.3633 -1.0272 -0.0303 34 1 1.3130 -1.4732 1.5800 35 1 2.3736 -0.1011 1.9997 36 1 5.2866 -3.9675 3.2406 37 1 4.7544 -4.3198 5.6190 38 1 3.2442 -3.7683 7.5541 39 1 0.0718 -1.1386 7.0544 40 1 0.5852 -0.7761 4.7022 41 1 4.1946 -0.4428 -0.7923 42 1 3.8031 -2.1382 -1.2133 43 1 1.2747 0.5885 -2.6524 44 1 2.9853 0.8626 -2.2436 45 1 2.7626 -1.6601 -3.4935 46 1 3.6539 -2.7075 -6.5326 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716989255.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:53 Heat of formation + Delta-G solvation = 52.818096 kcal Electronic energy + Delta-G solvation = -28667.580617 eV Core-core repulsion = 24750.677299 eV Total energy + Delta-G solvation = -3916.903318 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.72597 -40.14303 -38.51249 -37.63199 -34.75326 -34.14141 -32.95074 -32.03698 -31.35283 -30.89180 -29.16304 -26.79835 -26.11267 -25.15637 -24.45281 -23.22839 -22.95284 -21.23383 -20.32009 -19.94627 -18.93135 -17.92318 -17.67571 -17.02015 -16.38036 -16.15447 -15.73582 -15.31590 -15.05119 -14.75860 -14.66167 -14.44083 -14.06758 -13.87864 -13.60847 -13.48742 -13.20860 -13.13156 -12.96287 -12.75642 -12.74816 -12.24399 -12.11657 -11.96610 -11.30603 -11.19604 -11.06907 -10.83517 -10.65534 -10.52124 -10.39083 -10.32565 -10.20220 -10.00664 -9.75107 -9.71623 -9.62331 -8.99918 -8.85951 -8.57395 -6.91342 -5.74238 -3.03599 -0.40776 0.10085 1.35405 2.11433 2.77877 3.01365 3.45653 3.49788 3.51144 3.53023 3.64907 3.85065 4.00483 4.16901 4.20054 4.31791 4.56428 4.61009 4.69302 4.82596 4.84252 4.94897 5.10127 5.18431 5.25833 5.40603 5.42977 5.51763 5.53829 5.58101 5.60550 5.68474 5.79869 5.85567 5.94113 6.03532 6.07241 6.09976 6.14324 6.21768 6.29194 6.39644 6.45670 6.71845 6.84473 7.12976 7.40206 7.47134 7.70799 8.01047 8.44004 9.55140 10.12218 10.46577 11.48364 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.022835 B = 0.002288 C = 0.002111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1225.909786 B =12234.166322 C =13261.590659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.104 4.104 3 H 0.085 0.915 4 C 0.122 3.878 5 N -0.593 5.593 6 C 0.572 3.428 7 O -0.526 6.526 8 C 0.149 3.851 9 C -0.129 4.129 10 C -0.038 4.038 11 C -0.156 4.156 12 C 0.160 3.840 13 N -0.485 5.485 14 C 0.087 3.913 15 C -0.133 4.133 16 C 0.150 3.850 17 N -0.441 5.441 18 C 0.113 3.887 19 C -0.100 4.100 20 H 0.087 0.913 21 C 0.166 3.834 22 N -0.733 5.733 23 C -0.241 4.241 24 H 0.070 0.930 25 C -0.013 4.013 26 N -0.932 5.932 27 Si 0.907 3.093 28 H -0.286 1.286 29 H -0.291 1.291 30 H -0.286 1.286 31 H 0.054 0.946 32 H 0.064 0.936 33 H 0.056 0.944 34 H 0.076 0.924 35 H 0.071 0.929 36 H 0.157 0.843 37 H 0.154 0.846 38 H 0.169 0.831 39 H 0.161 0.839 40 H 0.150 0.850 41 H 0.075 0.925 42 H 0.086 0.914 43 H 0.025 0.975 44 H 0.021 0.979 45 H 0.384 0.616 46 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.025 -0.192 28.420 28.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.124 4.124 3 H 0.104 0.896 4 C -0.001 4.001 5 N -0.324 5.324 6 C 0.358 3.642 7 O -0.402 6.402 8 C -0.006 4.006 9 C -0.150 4.150 10 C -0.066 4.066 11 C -0.160 4.160 12 C -0.014 4.014 13 N -0.192 5.192 14 C -0.056 4.056 15 C -0.154 4.154 16 C 0.022 3.978 17 N -0.153 5.153 18 C -0.008 4.008 19 C -0.119 4.119 20 H 0.105 0.895 21 C 0.038 3.962 22 N -0.377 5.377 23 C -0.372 4.372 24 H 0.088 0.912 25 C -0.209 4.209 26 N -0.581 5.581 27 Si 0.738 3.262 28 H -0.213 1.213 29 H -0.217 1.217 30 H -0.213 1.213 31 H 0.073 0.927 32 H 0.083 0.917 33 H 0.075 0.925 34 H 0.094 0.906 35 H 0.090 0.910 36 H 0.174 0.826 37 H 0.171 0.829 38 H 0.186 0.814 39 H 0.179 0.821 40 H 0.167 0.833 41 H 0.094 0.906 42 H 0.105 0.895 43 H 0.043 0.957 44 H 0.039 0.961 45 H 0.218 0.782 46 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -4.398 0.171 28.427 28.765 hybrid contribution 0.908 -0.322 -1.314 1.629 sum -3.490 -0.151 27.113 27.337 Atomic orbital electron populations 1.21713 0.93788 1.02127 1.01884 1.22331 0.96465 0.99577 0.94009 0.89634 1.22227 0.87234 0.94602 0.96030 1.48401 1.29437 1.42550 1.12019 1.17512 0.82711 0.79861 0.84145 1.90831 1.28535 1.48622 1.72190 1.21609 0.91084 0.92981 0.94954 1.21858 1.00970 0.98036 0.94117 1.21461 0.94181 0.96097 0.94871 1.19968 0.98562 1.00355 0.97136 1.23262 0.92231 0.94727 0.91180 1.67502 1.05736 1.06816 1.39191 1.22289 0.98170 0.94734 0.90450 1.21807 0.96579 1.00554 0.96434 1.18967 0.95004 0.94468 0.89338 1.68218 1.14504 1.21114 1.11477 1.22519 0.97940 1.01955 0.78400 1.22711 0.95044 0.99355 0.94837 0.89505 1.20583 0.97292 0.92721 0.85615 1.42362 1.82643 1.07524 1.05177 1.19158 1.38848 0.92663 0.86554 0.91233 1.24749 1.02460 0.95592 0.98132 1.69651 1.53714 1.04324 1.30372 0.86267 0.77912 0.78014 0.83971 1.21268 1.21711 1.21300 0.92715 0.91732 0.92530 0.90597 0.91026 0.82560 0.82874 0.81421 0.82133 0.83275 0.90641 0.89530 0.95719 0.96086 0.78231 0.93434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.44 9.13 37.16 0.34 -1.10 16 2 C -0.10 -1.26 3.01 -88.78 -0.27 -1.53 16 3 H 0.09 1.00 8.04 -51.93 -0.42 0.58 16 4 C 0.12 1.47 4.99 -3.07 -0.02 1.45 16 5 N -0.59 -8.78 3.32 -171.29 -0.57 -9.35 16 6 C 0.57 8.79 7.85 -12.08 -0.09 8.70 16 7 O -0.53 -9.62 16.53 5.38 0.09 -9.53 16 8 C 0.15 1.84 6.73 -82.89 -0.56 1.28 16 9 C -0.13 -1.26 9.54 -39.42 -0.38 -1.64 16 10 C -0.04 -0.27 9.92 -39.28 -0.39 -0.66 16 11 C -0.16 -1.30 5.75 -106.74 -0.61 -1.91 16 12 C 0.16 1.11 11.05 -16.99 -0.19 0.92 16 13 N -0.48 -4.05 10.30 -13.18 -0.14 -4.19 16 14 C 0.09 0.63 11.05 -17.99 -0.20 0.43 16 15 C -0.13 -1.06 10.08 -39.32 -0.40 -1.46 16 16 C 0.15 1.49 6.63 -84.86 -0.56 0.93 16 17 N -0.44 -5.04 6.79 -7.49 -0.05 -5.09 16 18 C 0.11 1.88 6.33 -2.41 -0.02 1.87 16 19 C -0.10 -1.58 2.51 -88.35 -0.22 -1.80 16 20 H 0.09 1.45 8.04 -51.93 -0.42 1.03 16 21 C 0.17 3.21 5.72 -4.04 -0.02 3.19 16 22 N -0.73 -18.38 5.55 -59.91 -0.33 -18.71 16 23 C -0.24 -6.74 9.99 -15.06 -0.15 -6.89 16 24 H 0.07 1.88 7.83 -52.48 -0.41 1.46 16 25 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 26 N -0.93 -28.46 13.06 55.49 0.72 -27.74 16 27 Si 0.91 22.54 29.55 -169.99 -5.02 17.52 16 28 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 29 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 30 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 31 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 32 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.06 0.61 8.13 -51.93 -0.42 0.18 16 34 H 0.08 0.90 7.07 -51.93 -0.37 0.53 16 35 H 0.07 0.81 7.53 -51.93 -0.39 0.42 16 36 H 0.16 1.43 7.60 -52.49 -0.40 1.03 16 37 H 0.15 0.50 8.06 -52.49 -0.42 0.07 16 38 H 0.17 0.59 8.06 -52.49 -0.42 0.17 16 39 H 0.16 0.72 8.06 -52.49 -0.42 0.30 16 40 H 0.15 0.93 8.06 -52.48 -0.42 0.51 16 41 H 0.08 1.28 7.91 -51.93 -0.41 0.87 16 42 H 0.09 1.65 8.03 -51.93 -0.42 1.23 16 43 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 44 H 0.02 0.41 7.96 -51.93 -0.41 0.00 16 45 H 0.38 10.22 7.67 -40.82 -0.31 9.90 16 46 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 382.98 15.07 5.77 5.77 Total: -1.00 -34.31 382.98 -9.83 -44.14 By element: Atomic # 1 Polarization: 12.34 SS G_CDS: -6.47 Total: 5.87 kcal Atomic # 6 Polarization: 5.14 SS G_CDS: -3.83 Total: 1.31 kcal Atomic # 7 Polarization: -64.71 SS G_CDS: -0.36 Total: -65.08 kcal Atomic # 8 Polarization: -9.62 SS G_CDS: 0.09 Total: -9.53 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -5.02 Total: 17.52 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -34.31 -9.83 -44.14 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716989255.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.954 kcal (2) G-P(sol) polarization free energy of solvation -34.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.135 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds