Wall clock time and date at job start Sat Apr 11 2020 06:05:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08996 * 110.64336 * 2 1 4 4 C 1.54325 * 110.72263 * 123.14275 * 2 1 3 5 5 N 1.47018 * 107.27005 * 140.55348 * 4 2 1 6 6 C 1.34784 * 125.64881 * 181.02407 * 5 4 2 7 7 O 1.21484 * 119.99999 * 180.02562 * 6 5 4 8 8 C 1.48375 * 119.99498 * 0.02688 * 6 5 4 9 9 C 1.40213 * 119.21540 * 179.97438 * 8 6 5 10 10 C 1.36646 * 119.90658 * 179.71861 * 9 8 6 11 11 C 1.40560 * 118.10675 * 0.28458 * 10 9 8 12 12 C 1.40399 * 122.05809 * 179.97438 * 11 10 9 13 13 N 1.31253 * 119.86979 * 180.02562 * 12 11 10 14 14 C 1.32596 * 122.68269 * 359.97438 * 13 12 11 15 15 C 1.36099 * 121.99490 * 359.97438 * 14 13 12 16 16 C 1.40948 * 118.77095 * 359.97438 * 15 14 13 17 17 N 1.31982 * 119.22442 * 0.29951 * 8 6 5 18 18 C 1.47426 * 108.70488 * 1.28990 * 5 4 2 19 19 C 1.55127 * 104.72111 * 335.54848 * 18 5 4 20 20 H 1.08993 * 111.22926 * 279.17720 * 19 18 5 21 21 C 1.53003 * 110.90504 * 155.27461 * 19 18 5 22 22 N 1.46492 * 109.47228 * 72.97740 * 21 19 18 23 23 C 1.36934 * 120.00502 * 179.97438 * 22 21 19 24 24 H 1.08009 * 119.99664 * 0.02562 * 23 22 21 25 25 C 1.38806 * 120.00382 * 180.02562 * 23 22 21 26 26 N 1.31618 * 120.00214 * 0.02562 * 25 23 22 27 27 Si 1.86807 * 120.00192 * 180.02562 * 25 23 22 28 28 H 1.48508 * 109.46719 * 60.00101 * 27 25 23 29 29 H 1.48496 * 109.47362 * 180.02562 * 27 25 23 30 30 H 1.48497 * 109.47040 * 300.00443 * 27 25 23 31 31 H 1.08999 * 109.46948 * 298.31077 * 1 2 3 32 32 H 1.08997 * 109.47505 * 58.30984 * 1 2 3 33 33 H 1.08997 * 109.46926 * 178.31163 * 1 2 3 34 34 H 1.09005 * 109.87981 * 21.14253 * 4 2 1 35 35 H 1.08993 * 110.01319 * 260.04363 * 4 2 1 36 36 H 1.08002 * 120.05004 * 0.02562 * 9 8 6 37 37 H 1.08001 * 120.94721 * 180.29915 * 10 9 8 38 38 H 1.08001 * 120.06627 * 0.03880 * 12 11 10 39 39 H 1.07997 * 118.99918 * 179.97438 * 14 13 12 40 40 H 1.08003 * 120.61264 * 180.02562 * 15 14 13 41 41 H 1.08996 * 110.37034 * 94.48213 * 18 5 4 42 42 H 1.09005 * 110.36458 * 216.80390 * 18 5 4 43 43 H 1.09001 * 109.47412 * 192.98208 * 21 19 18 44 44 H 1.09005 * 109.46828 * 312.97870 * 21 19 18 45 45 H 0.97003 * 119.99793 * 359.97438 * 22 21 19 46 46 H 0.97005 * 120.00196 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0200 0.0000 4 6 2.0760 -0.7892 1.2086 5 7 3.2445 -1.5495 0.7415 6 6 3.9924 -2.3811 1.4936 7 8 4.9399 -2.9596 1.0003 8 6 3.6582 -2.5902 2.9241 9 6 4.4469 -3.4593 3.6912 10 6 4.1553 -3.6578 5.0114 11 6 3.0537 -2.9756 5.5561 12 6 2.6796 -3.1187 6.9017 13 7 1.6425 -2.4612 7.3653 14 6 0.9135 -1.6500 6.6112 15 6 1.1938 -1.4423 5.2957 16 6 2.2938 -2.1118 4.7225 17 7 2.6218 -1.9586 3.4427 18 6 3.4665 -1.2467 -0.6841 19 6 2.0789 -0.7975 -1.2125 20 1 1.4447 -1.6556 -1.4352 21 6 2.2277 0.1039 -2.4398 22 7 2.6327 -0.7039 -3.5928 23 6 2.8279 -0.1094 -4.8108 24 1 2.6836 0.9553 -4.9213 25 6 3.2111 -0.8750 -5.9034 26 7 3.3865 -2.1724 -5.7689 27 14 3.4781 -0.0637 -7.5648 28 1 4.5488 0.9589 -7.4500 29 1 3.8791 -1.0915 -8.5588 30 1 2.2181 0.5863 -8.0064 31 1 -0.3633 0.4874 0.9047 32 1 -0.3634 0.5398 -0.8744 33 1 -0.3633 -1.0272 -0.0303 34 1 1.3130 -1.4732 1.5800 35 1 2.3736 -0.1011 1.9997 36 1 5.2866 -3.9675 3.2406 37 1 4.7544 -4.3198 5.6190 38 1 3.2442 -3.7683 7.5541 39 1 0.0718 -1.1386 7.0544 40 1 0.5852 -0.7761 4.7022 41 1 4.1946 -0.4428 -0.7923 42 1 3.8031 -2.1382 -1.2133 43 1 1.2747 0.5885 -2.6524 44 1 2.9853 0.8626 -2.2436 45 1 2.7626 -1.6601 -3.4935 46 1 3.6539 -2.7075 -6.5326 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716989255.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:52 Heat of formation + Delta-G solvation = 30.376313 kcal Electronic energy + Delta-G solvation = -28668.553766 eV Core-core repulsion = 24750.677299 eV Total energy + Delta-G solvation = -3917.876467 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.43771 -41.21883 -39.47614 -38.64172 -36.50382 -34.91187 -34.23035 -33.07007 -32.78843 -31.49690 -30.70472 -27.94976 -27.22614 -26.33980 -25.29369 -24.71440 -23.73260 -22.55923 -21.32922 -21.22271 -19.62058 -19.25849 -18.70720 -18.32821 -17.45884 -17.14706 -16.73946 -16.63169 -16.03005 -15.75507 -15.56042 -15.44742 -15.34558 -15.18157 -14.92760 -14.58140 -14.33267 -14.15904 -14.01327 -13.72481 -13.64411 -13.43329 -13.35935 -13.11648 -12.93929 -12.73125 -12.48842 -12.19254 -11.94265 -11.85487 -11.78471 -11.62757 -11.61017 -11.35590 -10.92987 -10.87577 -10.49245 -10.46816 -9.79958 -9.56971 -9.00250 -7.94399 -5.23877 -1.09357 -0.55209 0.73435 1.25435 1.46837 1.50433 1.56465 1.67246 2.14227 2.55955 2.68713 2.97413 3.30000 3.37138 3.39280 3.45386 3.53204 3.57993 3.60944 3.74204 3.78404 3.98780 4.16110 4.25230 4.27615 4.39637 4.50636 4.52280 4.54634 4.65375 4.72748 4.76512 4.79668 4.82204 4.85618 4.88922 4.92067 5.04877 5.14097 5.17199 5.22622 5.27456 5.35079 5.48442 5.51755 5.55196 6.25870 6.26966 6.40216 6.84492 6.86381 7.33045 8.08751 8.31041 9.29058 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.022835 B = 0.002288 C = 0.002111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1225.909786 B =12234.166322 C =13261.590659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.092 4.092 3 H 0.097 0.903 4 C 0.130 3.870 5 N -0.595 5.595 6 C 0.565 3.435 7 O -0.569 6.569 8 C 0.128 3.872 9 C -0.148 4.148 10 C -0.010 4.010 11 C -0.165 4.165 12 C 0.169 3.831 13 N -0.504 5.504 14 C 0.091 3.909 15 C -0.143 4.143 16 C 0.129 3.871 17 N -0.451 5.451 18 C 0.117 3.883 19 C -0.090 4.090 20 H 0.075 0.925 21 C 0.167 3.833 22 N -0.747 5.747 23 C -0.244 4.244 24 H 0.079 0.921 25 C -0.079 4.079 26 N -0.972 5.972 27 Si 0.975 3.025 28 H -0.278 1.278 29 H -0.298 1.298 30 H -0.275 1.275 31 H 0.082 0.918 32 H 0.060 0.940 33 H 0.052 0.948 34 H 0.082 0.918 35 H 0.085 0.915 36 H 0.155 0.845 37 H 0.199 0.801 38 H 0.206 0.794 39 H 0.187 0.813 40 H 0.162 0.838 41 H 0.068 0.932 42 H 0.051 0.949 43 H 0.035 0.965 44 H 0.025 0.975 45 H 0.372 0.628 46 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.216 0.928 31.422 31.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.112 4.112 3 H 0.115 0.885 4 C 0.008 3.992 5 N -0.326 5.326 6 C 0.353 3.647 7 O -0.448 6.448 8 C -0.026 4.026 9 C -0.169 4.169 10 C -0.038 4.038 11 C -0.169 4.169 12 C -0.004 4.004 13 N -0.212 5.212 14 C -0.052 4.052 15 C -0.164 4.164 16 C 0.000 4.000 17 N -0.163 5.163 18 C -0.005 4.005 19 C -0.109 4.109 20 H 0.094 0.906 21 C 0.040 3.960 22 N -0.390 5.390 23 C -0.376 4.376 24 H 0.097 0.903 25 C -0.271 4.271 26 N -0.622 5.622 27 Si 0.804 3.196 28 H -0.204 1.204 29 H -0.224 1.224 30 H -0.201 1.201 31 H 0.101 0.899 32 H 0.079 0.921 33 H 0.071 0.929 34 H 0.100 0.900 35 H 0.103 0.897 36 H 0.173 0.827 37 H 0.216 0.784 38 H 0.222 0.778 39 H 0.204 0.796 40 H 0.180 0.820 41 H 0.086 0.914 42 H 0.069 0.931 43 H 0.053 0.947 44 H 0.043 0.957 45 H 0.203 0.797 46 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -5.631 1.352 31.466 31.994 hybrid contribution 1.230 -0.652 -2.048 2.476 sum -4.401 0.700 29.418 29.754 Atomic orbital electron populations 1.21699 0.91998 1.02257 1.03137 1.22337 0.97832 0.99407 0.91581 0.88456 1.22313 0.86250 0.94555 0.96093 1.48491 1.30199 1.42839 1.11086 1.18122 0.81996 0.79001 0.85580 1.90786 1.30329 1.50171 1.73464 1.21220 0.92868 0.95192 0.93299 1.21908 1.01205 0.98475 0.95305 1.21907 0.93284 0.94863 0.93738 1.20236 0.98709 1.00139 0.97804 1.23850 0.91656 0.94113 0.90791 1.67603 1.06443 1.07487 1.39675 1.22723 0.98358 0.93994 0.90117 1.21984 0.96429 1.00996 0.96943 1.19358 0.96087 0.95473 0.89037 1.68065 1.14269 1.21395 1.12590 1.22275 0.98345 1.00084 0.79811 1.22520 0.94510 0.98948 0.94971 0.90649 1.20726 0.97337 0.92775 0.85136 1.42609 1.82759 1.07438 1.06161 1.19616 1.37189 0.93157 0.87600 0.90296 1.25618 1.03314 0.96197 1.01975 1.69829 1.55580 1.05834 1.31005 0.85184 0.78198 0.76913 0.79301 1.20387 1.22392 1.20096 0.89898 0.92114 0.92904 0.89985 0.89712 0.82731 0.78401 0.77761 0.79627 0.82003 0.91369 0.93051 0.94667 0.95701 0.79687 0.94091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.52 9.13 71.98 0.66 -1.86 16 2 C -0.09 -2.13 3.01 -9.60 -0.03 -2.15 16 3 H 0.10 2.07 8.04 -2.39 -0.02 2.05 16 4 C 0.13 3.03 4.99 86.73 0.43 3.47 16 5 N -0.60 -18.38 3.32 -814.15 -2.71 -21.09 16 6 C 0.57 18.39 7.85 86.94 0.68 19.07 16 7 O -0.57 -22.43 16.53 -3.67 -0.06 -22.49 16 8 C 0.13 3.21 6.73 42.30 0.28 3.50 16 9 C -0.15 -2.82 9.54 22.38 0.21 -2.61 16 10 C -0.01 -0.12 9.92 22.46 0.22 0.10 16 11 C -0.16 -2.30 5.75 -21.24 -0.12 -2.42 16 12 C 0.17 1.73 11.05 85.31 0.94 2.68 16 13 N -0.50 -6.81 10.30 -195.62 -2.02 -8.83 16 14 C 0.09 1.06 11.05 84.08 0.93 1.99 16 15 C -0.14 -1.96 10.08 22.44 0.23 -1.73 16 16 C 0.13 2.34 6.63 40.58 0.27 2.61 16 17 N -0.45 -10.01 6.79 -177.61 -1.21 -11.21 16 18 C 0.12 4.15 6.33 86.93 0.55 4.70 16 19 C -0.09 -2.90 2.51 -9.32 -0.02 -2.92 16 20 H 0.08 2.62 8.04 -2.39 -0.02 2.60 16 21 C 0.17 6.50 5.72 86.38 0.49 7.00 16 22 N -0.75 -38.53 5.55 -343.46 -1.91 -40.43 16 23 C -0.24 -13.78 9.99 84.03 0.84 -12.94 16 24 H 0.08 4.22 7.83 -2.91 -0.02 4.20 16 25 C -0.08 -4.64 5.50 84.86 0.47 -4.17 16 26 N -0.97 -61.24 13.06 21.65 0.28 -60.96 16 27 Si 0.98 46.92 29.55 68.60 2.03 48.95 16 28 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 29 H -0.30 -14.50 7.11 99.48 0.71 -13.79 16 30 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 31 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 32 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 33 H 0.05 1.05 8.13 -2.39 -0.02 1.03 16 34 H 0.08 1.85 7.07 -2.38 -0.02 1.84 16 35 H 0.08 1.81 7.53 -2.39 -0.02 1.79 16 36 H 0.15 2.91 7.60 -2.91 -0.02 2.89 16 37 H 0.20 0.37 8.06 -2.91 -0.02 0.35 16 38 H 0.21 0.42 8.06 -2.91 -0.02 0.39 16 39 H 0.19 1.06 8.06 -2.91 -0.02 1.03 16 40 H 0.16 1.66 8.06 -2.91 -0.02 1.63 16 41 H 0.07 2.47 7.91 -2.39 -0.02 2.45 16 42 H 0.05 2.15 8.03 -2.38 -0.02 2.14 16 43 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 44 H 0.03 0.97 7.96 -2.38 -0.02 0.95 16 45 H 0.37 20.77 7.67 -92.71 -0.71 20.06 16 46 H 0.25 15.35 8.31 -92.70 -0.77 14.58 16 Total: -1.00 -77.76 382.98 1.74 -76.02 By element: Atomic # 1 Polarization: 25.45 SS G_CDS: 0.29 Total: 25.75 kcal Atomic # 6 Polarization: 7.27 SS G_CDS: 7.04 Total: 14.31 kcal Atomic # 7 Polarization: -134.98 SS G_CDS: -7.55 Total: -142.53 kcal Atomic # 8 Polarization: -22.43 SS G_CDS: -0.06 Total: -22.49 kcal Atomic # 14 Polarization: 46.92 SS G_CDS: 2.03 Total: 48.95 kcal Total: -77.76 1.74 -76.02 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716989255.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.393 kcal (2) G-P(sol) polarization free energy of solvation -77.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.017 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds