Wall clock time and date at job start Sat Apr 11 2020 06:05:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 110.63659 * 2 1 4 4 C 1.54325 * 110.71613 * 236.85989 * 2 1 3 5 5 N 1.47019 * 107.27125 * 263.82839 * 4 2 1 6 6 C 1.34767 * 125.65001 * 181.02595 * 5 4 2 7 7 O 1.21487 * 120.00144 * 180.02562 * 6 5 4 8 8 C 1.48380 * 120.00143 * 0.02562 * 6 5 4 9 9 C 1.40217 * 119.22295 * 180.24340 * 8 6 5 10 10 C 1.36637 * 119.90653 * 180.25748 * 9 8 6 11 11 C 1.40563 * 118.11135 * 359.50626 * 10 9 8 12 12 C 1.40392 * 122.06850 * 180.27607 * 11 10 9 13 13 N 1.31250 * 119.87815 * 179.97438 * 12 11 10 14 14 C 1.32593 * 122.67954 * 359.97438 * 13 12 11 15 15 C 1.36099 * 121.99665 * 0.02562 * 14 13 12 16 16 C 1.40947 * 118.76834 * 359.95768 * 15 14 13 17 17 N 1.31983 * 119.21823 * 0.02562 * 8 6 5 18 18 C 1.47433 * 108.70277 * 1.28934 * 5 4 2 19 19 C 1.55129 * 104.71889 * 335.55448 * 18 5 4 20 20 H 1.08998 * 111.22839 * 279.17111 * 19 18 5 21 21 C 1.53007 * 110.90351 * 155.27712 * 19 18 5 22 22 N 1.46500 * 109.47363 * 72.97223 * 21 19 18 23 23 C 1.36935 * 119.99674 * 180.02562 * 22 21 19 24 24 H 1.07999 * 120.00283 * 359.97438 * 23 22 21 25 25 C 1.38818 * 119.99675 * 180.02562 * 23 22 21 26 26 N 1.31621 * 119.99918 * 359.97438 * 25 23 22 27 27 Si 1.86795 * 119.99935 * 179.97438 * 25 23 22 28 28 H 1.48500 * 109.47143 * 59.99986 * 27 25 23 29 29 H 1.48504 * 109.47328 * 179.97438 * 27 25 23 30 30 H 1.48497 * 109.47345 * 300.00001 * 27 25 23 31 31 H 1.08994 * 109.47510 * 181.68787 * 1 2 3 32 32 H 1.09005 * 109.47341 * 301.68962 * 1 2 3 33 33 H 1.08999 * 109.47117 * 61.68134 * 1 2 3 34 34 H 1.08999 * 109.87540 * 144.41325 * 4 2 1 35 35 H 1.08996 * 110.01326 * 23.32326 * 4 2 1 36 36 H 1.07998 * 120.04566 * 0.02562 * 9 8 6 37 37 H 1.08002 * 120.94726 * 179.78661 * 10 9 8 38 38 H 1.08006 * 120.06490 * 359.96482 * 12 11 10 39 39 H 1.08007 * 119.00307 * 180.02562 * 14 13 12 40 40 H 1.08002 * 120.61644 * 179.97438 * 15 14 13 41 41 H 1.08998 * 110.36403 * 94.48008 * 18 5 4 42 42 H 1.09000 * 110.36678 * 216.80700 * 18 5 4 43 43 H 1.08999 * 109.47006 * 192.97702 * 21 19 18 44 44 H 1.09000 * 109.46737 * 312.97018 * 21 19 18 45 45 H 0.96996 * 119.99593 * 0.02562 * 22 21 19 46 46 H 0.96995 * 119.99808 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0201 0.0000 4 6 2.0759 -0.7891 -1.2087 5 7 2.3715 -2.1519 -0.7428 6 6 2.8848 -3.1452 -1.4952 7 8 3.0886 -4.2369 -1.0028 8 6 3.2011 -2.9054 -2.9249 9 6 3.7298 -3.9519 -3.6939 10 6 4.0310 -3.7450 -5.0105 11 6 3.7851 -2.4723 -5.5542 12 6 4.0579 -2.1703 -6.8978 13 7 3.8110 -0.9672 -7.3607 14 6 3.3050 -0.0003 -6.6076 15 6 3.0058 -0.1913 -5.2937 16 6 3.2420 -1.4574 -4.7213 17 7 2.9740 -1.7133 -3.4438 18 6 2.0074 -2.2537 0.6823 19 6 2.0789 -0.7975 1.2123 20 1 3.1058 -0.5093 1.4370 21 6 1.1815 -0.6182 2.4386 22 7 1.7913 -1.2849 3.5918 23 6 1.1637 -1.2587 4.8085 24 1 0.2194 -0.7462 4.9182 25 6 1.7418 -1.8899 5.9014 26 7 2.8930 -2.5140 5.7679 27 14 0.8861 -1.8535 7.5614 28 1 -0.4497 -2.4916 7.4438 29 1 1.7026 -2.5953 8.5556 30 1 0.7247 -0.4454 8.0045 31 1 -0.3634 -1.0271 0.0303 32 1 -0.3634 0.5399 0.8745 33 1 -0.3633 0.4875 -0.9047 34 1 2.9867 -0.3179 -1.5781 35 1 1.3282 -0.8222 -2.0011 36 1 3.9022 -4.9190 -3.2452 37 1 4.4421 -4.5381 -5.6175 38 1 4.4704 -2.9265 -7.5494 39 1 3.1248 0.9683 -7.0502 40 1 2.5947 0.6124 -4.7007 41 1 0.9973 -2.6493 0.7883 42 1 2.7207 -2.8852 1.2119 43 1 1.0662 0.4444 2.6522 44 1 0.2036 -1.0571 2.2403 45 1 2.6396 -1.7448 3.4933 46 1 3.2967 -2.9553 6.5314 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716989256.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:55 Heat of formation + Delta-G solvation = 55.063700 kcal Electronic energy + Delta-G solvation = -28746.474506 eV Core-core repulsion = 24829.668565 eV Total energy + Delta-G solvation = -3916.805941 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.72740 -40.19795 -38.58892 -37.66828 -34.76761 -34.13770 -32.90514 -31.99197 -31.13975 -30.88953 -29.03412 -26.89901 -26.24199 -25.16345 -24.46437 -23.29085 -22.98057 -21.70591 -20.34913 -19.26027 -18.88729 -17.96673 -17.65719 -16.90726 -16.45272 -16.05859 -15.77304 -15.33415 -15.18690 -14.77661 -14.75731 -14.55517 -14.06141 -13.77775 -13.56706 -13.52943 -13.26171 -13.08315 -12.92254 -12.74981 -12.52010 -12.36669 -12.18035 -11.72631 -11.56482 -11.19319 -11.01235 -10.81373 -10.65948 -10.42150 -10.36488 -10.30535 -10.20073 -9.98409 -9.75039 -9.70236 -9.64626 -8.99900 -8.85260 -8.56789 -6.90838 -5.74086 -3.03310 -0.40702 0.10143 1.35461 2.11585 2.78456 3.01544 3.45669 3.49833 3.51158 3.53185 3.64981 3.85091 4.00500 4.17116 4.20186 4.32001 4.56514 4.62249 4.69614 4.82176 4.83234 5.00183 5.10175 5.17824 5.25366 5.36096 5.42875 5.49658 5.55766 5.59661 5.61616 5.69177 5.84684 5.90633 5.95731 6.00672 6.06900 6.10187 6.17842 6.21615 6.35349 6.39480 6.47587 6.71101 6.84808 7.13026 7.40253 7.47528 7.70955 8.01415 8.44290 9.55324 10.12681 10.46916 11.48575 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.023612 B = 0.002277 C = 0.002123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1185.529957 B =12293.610697 C =13188.007226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.103 4.103 3 H 0.088 0.912 4 C 0.122 3.878 5 N -0.591 5.591 6 C 0.572 3.428 7 O -0.526 6.526 8 C 0.149 3.851 9 C -0.129 4.129 10 C -0.038 4.038 11 C -0.156 4.156 12 C 0.160 3.840 13 N -0.485 5.485 14 C 0.087 3.913 15 C -0.133 4.133 16 C 0.150 3.850 17 N -0.441 5.441 18 C 0.115 3.885 19 C -0.101 4.101 20 H 0.086 0.914 21 C 0.166 3.834 22 N -0.733 5.733 23 C -0.241 4.241 24 H 0.070 0.930 25 C -0.013 4.013 26 N -0.932 5.932 27 Si 0.907 3.093 28 H -0.286 1.286 29 H -0.291 1.291 30 H -0.286 1.286 31 H 0.056 0.944 32 H 0.066 0.934 33 H 0.052 0.948 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.157 0.843 37 H 0.154 0.846 38 H 0.169 0.831 39 H 0.161 0.839 40 H 0.150 0.850 41 H 0.075 0.925 42 H 0.086 0.914 43 H 0.024 0.976 44 H 0.025 0.975 45 H 0.384 0.616 46 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.071 3.331 -28.406 28.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.123 4.123 3 H 0.107 0.893 4 C -0.001 4.001 5 N -0.323 5.323 6 C 0.358 3.642 7 O -0.402 6.402 8 C -0.006 4.006 9 C -0.150 4.150 10 C -0.066 4.066 11 C -0.160 4.160 12 C -0.014 4.014 13 N -0.192 5.192 14 C -0.056 4.056 15 C -0.154 4.154 16 C 0.022 3.978 17 N -0.153 5.153 18 C -0.007 4.007 19 C -0.121 4.121 20 H 0.104 0.896 21 C 0.038 3.962 22 N -0.378 5.378 23 C -0.372 4.372 24 H 0.088 0.912 25 C -0.210 4.210 26 N -0.581 5.581 27 Si 0.738 3.262 28 H -0.213 1.213 29 H -0.217 1.217 30 H -0.213 1.213 31 H 0.075 0.925 32 H 0.085 0.915 33 H 0.071 0.929 34 H 0.092 0.908 35 H 0.092 0.908 36 H 0.174 0.826 37 H 0.171 0.829 38 H 0.186 0.814 39 H 0.179 0.821 40 H 0.167 0.833 41 H 0.093 0.907 42 H 0.104 0.896 43 H 0.042 0.958 44 H 0.043 0.957 45 H 0.217 0.783 46 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 0.854 3.809 -28.413 28.680 hybrid contribution 0.030 -0.937 1.309 1.610 sum 0.884 2.872 -27.104 27.271 Atomic orbital electron populations 1.21833 0.94175 1.02267 1.01757 1.22307 0.96605 0.99329 0.94029 0.89324 1.22230 1.00731 0.81030 0.96116 1.48398 1.60075 1.11785 1.12043 1.17506 0.78749 0.83849 0.84138 1.90832 1.53792 1.23380 1.72208 1.21613 0.94475 0.89581 0.94941 1.21855 0.97991 1.01011 0.94126 1.21459 0.94780 0.95468 0.94904 1.19966 1.02932 0.95992 0.97130 1.23259 0.93092 0.93857 0.91193 1.67502 1.11558 1.01065 1.39121 1.22291 0.94595 0.98295 0.90464 1.21806 1.01129 0.96003 0.96442 1.18969 0.95360 0.94075 0.89376 1.68217 1.15190 1.20407 1.11515 1.22500 1.01490 0.98263 0.78414 1.22658 1.01248 0.93237 0.94921 0.89594 1.20637 0.94143 0.95973 0.85462 1.42384 1.25614 1.64473 1.05307 1.19157 1.02996 1.28422 0.86620 0.91235 1.24751 0.97305 1.00769 0.98131 1.69650 1.18085 1.39944 1.30384 0.86268 0.78534 0.77395 0.83973 1.21279 1.21715 1.21301 0.92466 0.91518 0.92945 0.90817 0.90774 0.82565 0.82879 0.81424 0.82131 0.83273 0.90664 0.89591 0.95830 0.95679 0.78273 0.93439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.63 7.91 37.16 0.29 -1.33 16 2 C -0.10 -1.24 3.47 -88.79 -0.31 -1.55 16 3 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 4 C 0.12 1.46 4.97 -3.07 -0.02 1.44 16 5 N -0.59 -8.71 3.32 -171.29 -0.57 -9.28 16 6 C 0.57 8.77 7.85 -12.09 -0.09 8.67 16 7 O -0.53 -9.61 16.53 5.38 0.09 -9.52 16 8 C 0.15 1.84 6.73 -82.88 -0.56 1.28 16 9 C -0.13 -1.26 9.54 -39.42 -0.38 -1.63 16 10 C -0.04 -0.27 9.92 -39.28 -0.39 -0.66 16 11 C -0.16 -1.30 5.75 -106.74 -0.61 -1.91 16 12 C 0.16 1.11 11.05 -16.99 -0.19 0.92 16 13 N -0.48 -4.06 10.30 -13.18 -0.14 -4.19 16 14 C 0.09 0.63 11.05 -17.99 -0.20 0.43 16 15 C -0.13 -1.06 10.08 -39.33 -0.40 -1.46 16 16 C 0.15 1.49 6.63 -84.86 -0.56 0.93 16 17 N -0.44 -5.03 6.79 -7.49 -0.05 -5.08 16 18 C 0.11 1.90 6.01 -2.41 -0.01 1.89 16 19 C -0.10 -1.59 2.93 -88.35 -0.26 -1.85 16 20 H 0.09 1.43 8.14 -51.93 -0.42 1.00 16 21 C 0.17 3.19 4.54 -4.04 -0.02 3.17 16 22 N -0.73 -18.37 5.55 -59.90 -0.33 -18.70 16 23 C -0.24 -6.72 9.99 -15.06 -0.15 -6.87 16 24 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 25 C -0.01 -0.39 5.50 -17.43 -0.10 -0.48 16 26 N -0.93 -28.46 13.06 55.49 0.72 -27.74 16 27 Si 0.91 22.54 29.55 -169.99 -5.02 17.51 16 28 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 29 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 30 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 31 H 0.06 0.71 7.32 -51.93 -0.38 0.33 16 32 H 0.07 0.79 7.12 -51.93 -0.37 0.42 16 33 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.07 0.86 7.40 -51.93 -0.38 0.48 16 35 H 0.07 0.84 7.23 -51.93 -0.38 0.47 16 36 H 0.16 1.43 7.60 -52.49 -0.40 1.03 16 37 H 0.15 0.50 8.06 -52.49 -0.42 0.07 16 38 H 0.17 0.59 8.06 -52.48 -0.42 0.17 16 39 H 0.16 0.72 8.06 -52.48 -0.42 0.30 16 40 H 0.15 0.93 8.06 -52.49 -0.42 0.51 16 41 H 0.08 1.28 7.46 -51.93 -0.39 0.89 16 42 H 0.09 1.64 8.03 -51.93 -0.42 1.22 16 43 H 0.02 0.46 8.05 -51.93 -0.42 0.04 16 44 H 0.03 0.49 6.94 -51.93 -0.36 0.13 16 45 H 0.38 10.21 7.67 -40.82 -0.31 9.89 16 46 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 377.95 15.07 5.70 5.70 Total: -1.00 -34.29 377.95 -9.86 -44.15 By element: Atomic # 1 Polarization: 12.49 SS G_CDS: -6.31 Total: 6.19 kcal Atomic # 6 Polarization: 4.92 SS G_CDS: -3.94 Total: 0.97 kcal Atomic # 7 Polarization: -64.63 SS G_CDS: -0.36 Total: -65.00 kcal Atomic # 8 Polarization: -9.61 SS G_CDS: 0.09 Total: -9.52 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -5.02 Total: 17.51 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -34.29 -9.86 -44.15 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716989256.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.212 kcal (2) G-P(sol) polarization free energy of solvation -34.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.149 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds