Wall clock time and date at job start Sat Apr 11 2020 06:05:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 110.63659 * 2 1 4 4 C 1.54325 * 110.71613 * 236.85989 * 2 1 3 5 5 N 1.47019 * 107.27125 * 263.82839 * 4 2 1 6 6 C 1.34767 * 125.65001 * 181.02595 * 5 4 2 7 7 O 1.21487 * 120.00144 * 180.02562 * 6 5 4 8 8 C 1.48380 * 120.00143 * 0.02562 * 6 5 4 9 9 C 1.40217 * 119.22295 * 180.24340 * 8 6 5 10 10 C 1.36637 * 119.90653 * 180.25748 * 9 8 6 11 11 C 1.40563 * 118.11135 * 359.50626 * 10 9 8 12 12 C 1.40392 * 122.06850 * 180.27607 * 11 10 9 13 13 N 1.31250 * 119.87815 * 179.97438 * 12 11 10 14 14 C 1.32593 * 122.67954 * 359.97438 * 13 12 11 15 15 C 1.36099 * 121.99665 * 0.02562 * 14 13 12 16 16 C 1.40947 * 118.76834 * 359.95768 * 15 14 13 17 17 N 1.31983 * 119.21823 * 0.02562 * 8 6 5 18 18 C 1.47433 * 108.70277 * 1.28934 * 5 4 2 19 19 C 1.55129 * 104.71889 * 335.55448 * 18 5 4 20 20 H 1.08998 * 111.22839 * 279.17111 * 19 18 5 21 21 C 1.53007 * 110.90351 * 155.27712 * 19 18 5 22 22 N 1.46500 * 109.47363 * 72.97223 * 21 19 18 23 23 C 1.36935 * 119.99674 * 180.02562 * 22 21 19 24 24 H 1.07999 * 120.00283 * 359.97438 * 23 22 21 25 25 C 1.38818 * 119.99675 * 180.02562 * 23 22 21 26 26 N 1.31621 * 119.99918 * 359.97438 * 25 23 22 27 27 Si 1.86795 * 119.99935 * 179.97438 * 25 23 22 28 28 H 1.48500 * 109.47143 * 59.99986 * 27 25 23 29 29 H 1.48504 * 109.47328 * 179.97438 * 27 25 23 30 30 H 1.48497 * 109.47345 * 300.00001 * 27 25 23 31 31 H 1.08994 * 109.47510 * 181.68787 * 1 2 3 32 32 H 1.09005 * 109.47341 * 301.68962 * 1 2 3 33 33 H 1.08999 * 109.47117 * 61.68134 * 1 2 3 34 34 H 1.08999 * 109.87540 * 144.41325 * 4 2 1 35 35 H 1.08996 * 110.01326 * 23.32326 * 4 2 1 36 36 H 1.07998 * 120.04566 * 0.02562 * 9 8 6 37 37 H 1.08002 * 120.94726 * 179.78661 * 10 9 8 38 38 H 1.08006 * 120.06490 * 359.96482 * 12 11 10 39 39 H 1.08007 * 119.00307 * 180.02562 * 14 13 12 40 40 H 1.08002 * 120.61644 * 179.97438 * 15 14 13 41 41 H 1.08998 * 110.36403 * 94.48008 * 18 5 4 42 42 H 1.09000 * 110.36678 * 216.80700 * 18 5 4 43 43 H 1.08999 * 109.47006 * 192.97702 * 21 19 18 44 44 H 1.09000 * 109.46737 * 312.97018 * 21 19 18 45 45 H 0.96996 * 119.99593 * 0.02562 * 22 21 19 46 46 H 0.96995 * 119.99808 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0201 0.0000 4 6 2.0759 -0.7891 -1.2087 5 7 2.3715 -2.1519 -0.7428 6 6 2.8848 -3.1452 -1.4952 7 8 3.0886 -4.2369 -1.0028 8 6 3.2011 -2.9054 -2.9249 9 6 3.7298 -3.9519 -3.6939 10 6 4.0310 -3.7450 -5.0105 11 6 3.7851 -2.4723 -5.5542 12 6 4.0579 -2.1703 -6.8978 13 7 3.8110 -0.9672 -7.3607 14 6 3.3050 -0.0003 -6.6076 15 6 3.0058 -0.1913 -5.2937 16 6 3.2420 -1.4574 -4.7213 17 7 2.9740 -1.7133 -3.4438 18 6 2.0074 -2.2537 0.6823 19 6 2.0789 -0.7975 1.2123 20 1 3.1058 -0.5093 1.4370 21 6 1.1815 -0.6182 2.4386 22 7 1.7913 -1.2849 3.5918 23 6 1.1637 -1.2587 4.8085 24 1 0.2194 -0.7462 4.9182 25 6 1.7418 -1.8899 5.9014 26 7 2.8930 -2.5140 5.7679 27 14 0.8861 -1.8535 7.5614 28 1 -0.4497 -2.4916 7.4438 29 1 1.7026 -2.5953 8.5556 30 1 0.7247 -0.4454 8.0045 31 1 -0.3634 -1.0271 0.0303 32 1 -0.3634 0.5399 0.8745 33 1 -0.3633 0.4875 -0.9047 34 1 2.9867 -0.3179 -1.5781 35 1 1.3282 -0.8222 -2.0011 36 1 3.9022 -4.9190 -3.2452 37 1 4.4421 -4.5381 -5.6175 38 1 4.4704 -2.9265 -7.5494 39 1 3.1248 0.9683 -7.0502 40 1 2.5947 0.6124 -4.7007 41 1 0.9973 -2.6493 0.7883 42 1 2.7207 -2.8852 1.2119 43 1 1.0662 0.4444 2.6522 44 1 0.2036 -1.0571 2.2403 45 1 2.6396 -1.7448 3.4933 46 1 3.2967 -2.9553 6.5314 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716989256.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:55 Heat of formation + Delta-G solvation = 32.425713 kcal Electronic energy + Delta-G solvation = -28747.456163 eV Core-core repulsion = 24829.668565 eV Total energy + Delta-G solvation = -3917.787598 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.44138 -41.27488 -39.56746 -38.65147 -36.49625 -34.91947 -34.23919 -32.91001 -32.70888 -31.49264 -30.53269 -28.03004 -27.37645 -26.38300 -25.30669 -24.71875 -23.76662 -23.06681 -21.33864 -20.55978 -19.60436 -19.28507 -18.62519 -18.27001 -17.46521 -17.16203 -16.75238 -16.67375 -16.18173 -15.79883 -15.63245 -15.39836 -15.34266 -15.23993 -14.79478 -14.57673 -14.20241 -14.13984 -14.06131 -13.81903 -13.64624 -13.52777 -13.20682 -13.03063 -12.99027 -12.74191 -12.65633 -12.21453 -11.89528 -11.81071 -11.67920 -11.65222 -11.53693 -11.38178 -10.91710 -10.86908 -10.49188 -10.46639 -9.78975 -9.56936 -8.99293 -7.94106 -5.23339 -1.09188 -0.55129 0.73536 1.25818 1.46878 1.50459 1.56447 1.68177 2.14508 2.56238 2.69069 2.97500 3.29834 3.37161 3.39717 3.45449 3.53618 3.58480 3.61504 3.75619 3.82366 3.98439 4.13539 4.23696 4.27646 4.33087 4.52280 4.54006 4.57384 4.65424 4.72995 4.76227 4.78938 4.81849 4.85792 4.91733 4.95258 5.03356 5.14126 5.18573 5.24568 5.28034 5.31073 5.49871 5.50463 5.55156 6.26490 6.27521 6.40657 6.85163 6.86433 7.33407 8.09674 8.31627 9.29443 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.023612 B = 0.002277 C = 0.002123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1185.529957 B =12293.610697 C =13188.007226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.090 4.090 3 H 0.113 0.887 4 C 0.129 3.871 5 N -0.594 5.594 6 C 0.565 3.435 7 O -0.569 6.569 8 C 0.128 3.872 9 C -0.148 4.148 10 C -0.010 4.010 11 C -0.165 4.165 12 C 0.169 3.831 13 N -0.504 5.504 14 C 0.091 3.909 15 C -0.143 4.143 16 C 0.129 3.871 17 N -0.451 5.451 18 C 0.120 3.880 19 C -0.093 4.093 20 H 0.076 0.924 21 C 0.168 3.832 22 N -0.748 5.748 23 C -0.243 4.243 24 H 0.079 0.921 25 C -0.079 4.079 26 N -0.972 5.972 27 Si 0.975 3.025 28 H -0.278 1.278 29 H -0.298 1.298 30 H -0.275 1.275 31 H 0.041 0.959 32 H 0.063 0.937 33 H 0.079 0.921 34 H 0.081 0.919 35 H 0.087 0.913 36 H 0.155 0.845 37 H 0.199 0.801 38 H 0.206 0.794 39 H 0.187 0.813 40 H 0.162 0.838 41 H 0.066 0.934 42 H 0.049 0.951 43 H 0.034 0.966 44 H 0.030 0.970 45 H 0.371 0.629 46 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.453 4.906 -31.410 31.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.110 4.110 3 H 0.132 0.868 4 C 0.007 3.993 5 N -0.324 5.324 6 C 0.353 3.647 7 O -0.448 6.448 8 C -0.025 4.025 9 C -0.169 4.169 10 C -0.038 4.038 11 C -0.169 4.169 12 C -0.004 4.004 13 N -0.212 5.212 14 C -0.052 4.052 15 C -0.164 4.164 16 C 0.000 4.000 17 N -0.163 5.163 18 C -0.002 4.002 19 C -0.113 4.113 20 H 0.094 0.906 21 C 0.042 3.958 22 N -0.391 5.391 23 C -0.375 4.375 24 H 0.097 0.903 25 C -0.271 4.271 26 N -0.623 5.623 27 Si 0.804 3.196 28 H -0.204 1.204 29 H -0.224 1.224 30 H -0.201 1.201 31 H 0.060 0.940 32 H 0.082 0.918 33 H 0.098 0.902 34 H 0.099 0.901 35 H 0.105 0.895 36 H 0.173 0.827 37 H 0.216 0.784 38 H 0.222 0.778 39 H 0.204 0.796 40 H 0.180 0.820 41 H 0.084 0.916 42 H 0.068 0.932 43 H 0.052 0.948 44 H 0.047 0.953 45 H 0.202 0.798 46 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 0.192 5.444 -31.454 31.923 hybrid contribution 0.221 -1.372 2.041 2.469 sum 0.413 4.072 -29.414 29.697 Atomic orbital electron populations 1.21826 0.93285 1.01640 1.03060 1.22335 0.97224 0.99875 0.91535 0.86843 1.22324 1.01407 0.79353 0.96182 1.48483 1.59902 1.12976 1.11089 1.18114 0.77822 0.83218 0.85567 1.90787 1.55540 1.25014 1.73485 1.21224 0.96878 0.91147 0.93293 1.21905 0.99273 1.00416 0.95309 1.21903 0.92123 0.96007 0.93768 1.20233 1.02774 0.96088 0.97794 1.23847 0.91599 0.94168 0.90804 1.67602 1.12218 1.01786 1.39608 1.22723 0.93215 0.99131 0.90133 1.21984 1.01705 0.95716 0.96948 1.19359 0.96001 0.95510 0.89087 1.68065 1.15686 1.19941 1.12613 1.22234 0.99866 0.98305 0.79831 1.22483 1.00262 0.93409 0.95111 0.90580 1.20772 0.94536 0.95628 0.84913 1.42641 1.25286 1.64829 1.06317 1.19617 1.03054 1.27160 0.87659 0.90282 1.25618 0.98261 1.01305 1.01964 1.69829 1.19879 1.41557 1.31006 0.85188 0.77424 0.77685 0.79326 1.20403 1.22416 1.20089 0.93962 0.91800 0.90164 0.90083 0.89534 0.82749 0.78419 0.77772 0.79631 0.82004 0.91553 0.93189 0.94825 0.95261 0.79751 0.94110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.95 7.91 71.98 0.57 -2.38 16 2 C -0.09 -2.05 3.47 -9.61 -0.03 -2.08 16 3 H 0.11 2.10 8.14 -2.39 -0.02 2.08 16 4 C 0.13 2.98 4.97 86.73 0.43 3.42 16 5 N -0.59 -18.22 3.32 -814.16 -2.71 -20.92 16 6 C 0.57 18.34 7.85 86.95 0.68 19.02 16 7 O -0.57 -22.45 16.53 -3.67 -0.06 -22.51 16 8 C 0.13 3.21 6.73 42.31 0.28 3.50 16 9 C -0.15 -2.83 9.54 22.38 0.21 -2.61 16 10 C -0.01 -0.12 9.92 22.46 0.22 0.10 16 11 C -0.16 -2.30 5.75 -21.24 -0.12 -2.42 16 12 C 0.17 1.74 11.05 85.30 0.94 2.68 16 13 N -0.50 -6.82 10.30 -195.62 -2.02 -8.84 16 14 C 0.09 1.06 11.05 84.08 0.93 1.99 16 15 C -0.14 -1.96 10.08 22.44 0.23 -1.73 16 16 C 0.13 2.34 6.63 40.58 0.27 2.61 16 17 N -0.45 -9.97 6.79 -177.60 -1.21 -11.17 16 18 C 0.12 4.24 6.01 86.93 0.52 4.77 16 19 C -0.09 -2.99 2.93 -9.33 -0.03 -3.01 16 20 H 0.08 2.60 8.14 -2.39 -0.02 2.59 16 21 C 0.17 6.50 4.54 86.38 0.39 6.89 16 22 N -0.75 -38.52 5.55 -343.44 -1.91 -40.43 16 23 C -0.24 -13.72 9.99 84.04 0.84 -12.88 16 24 H 0.08 4.22 7.83 -2.91 -0.02 4.20 16 25 C -0.08 -4.66 5.50 84.86 0.47 -4.20 16 26 N -0.97 -61.27 13.06 21.65 0.28 -60.99 16 27 Si 0.98 46.93 29.55 68.60 2.03 48.95 16 28 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 29 H -0.30 -14.52 7.11 99.48 0.71 -13.81 16 30 H -0.27 -12.60 7.11 99.48 0.71 -11.89 16 31 H 0.04 1.01 7.32 -2.39 -0.02 0.99 16 32 H 0.06 1.38 7.12 -2.38 -0.02 1.37 16 33 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 34 H 0.08 1.79 7.40 -2.39 -0.02 1.78 16 35 H 0.09 1.83 7.23 -2.39 -0.02 1.82 16 36 H 0.15 2.91 7.60 -2.91 -0.02 2.89 16 37 H 0.20 0.38 8.06 -2.91 -0.02 0.36 16 38 H 0.21 0.42 8.06 -2.91 -0.02 0.40 16 39 H 0.19 1.06 8.06 -2.91 -0.02 1.04 16 40 H 0.16 1.66 8.06 -2.91 -0.02 1.63 16 41 H 0.07 2.42 7.46 -2.39 -0.02 2.40 16 42 H 0.05 2.10 8.03 -2.39 -0.02 2.08 16 43 H 0.03 1.27 8.05 -2.39 -0.02 1.25 16 44 H 0.03 1.13 6.94 -2.39 -0.02 1.12 16 45 H 0.37 20.73 7.67 -92.71 -0.71 20.02 16 46 H 0.25 15.35 8.31 -92.71 -0.77 14.57 16 Total: -1.00 -77.86 377.95 1.52 -76.34 By element: Atomic # 1 Polarization: 25.63 SS G_CDS: 0.30 Total: 25.93 kcal Atomic # 6 Polarization: 6.84 SS G_CDS: 6.81 Total: 13.65 kcal Atomic # 7 Polarization: -134.81 SS G_CDS: -7.55 Total: -142.36 kcal Atomic # 8 Polarization: -22.45 SS G_CDS: -0.06 Total: -22.51 kcal Atomic # 14 Polarization: 46.93 SS G_CDS: 2.03 Total: 48.95 kcal Total: -77.86 1.52 -76.34 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716989256.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.761 kcal (2) G-P(sol) polarization free energy of solvation -77.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.335 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds