Wall clock time and date at job start Sat Apr 11 2020 06:06:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.09004 * 110.38441 * 2 1 4 4 C 1.54386 * 110.34177 * 237.76822 * 2 1 3 5 5 N 1.48145 * 104.61746 * 264.99503 * 4 2 1 6 6 C 1.34771 * 127.83887 * 140.41534 * 5 4 2 7 7 O 1.21494 * 120.00173 * 175.83058 * 6 5 4 8 8 C 1.48354 * 120.00036 * 355.83504 * 6 5 4 9 9 C 1.40164 * 119.20094 * 186.00800 * 8 6 5 10 10 C 1.36630 * 119.70298 * 179.76266 * 9 8 6 11 11 C 1.40597 * 118.20295 * 0.49755 * 10 9 8 12 12 C 1.40738 * 121.36103 * 179.77241 * 11 10 9 13 13 C 1.36588 * 118.12843 * 179.97438 * 12 11 10 14 14 C 1.39429 * 119.84380 * 0.02562 * 13 12 11 15 15 N 1.31014 * 121.84205 * 359.97438 * 14 13 12 16 16 C 1.33861 * 121.42961 * 359.97438 * 15 14 13 17 17 N 1.31887 * 119.19893 * 6.28046 * 8 6 5 18 18 C 1.48152 * 104.32133 * 320.41500 * 5 4 2 19 19 C 1.54283 * 110.34072 * 122.23071 * 2 1 3 20 20 H 1.09000 * 110.34077 * 237.85201 * 19 2 1 21 21 C 1.53002 * 110.34528 * 0.02562 * 19 2 1 22 22 N 1.46503 * 109.47193 * 185.00169 * 21 19 2 23 23 C 1.36936 * 119.99766 * 180.27650 * 22 21 19 24 24 H 1.07998 * 120.00152 * 359.72311 * 23 22 21 25 25 C 1.38813 * 119.99764 * 179.72380 * 23 22 21 26 26 N 1.31615 * 119.99913 * 359.97438 * 25 23 22 27 27 Si 1.86806 * 119.99755 * 179.97438 * 25 23 22 28 28 H 1.48499 * 109.46954 * 59.99852 * 27 25 23 29 29 H 1.48506 * 109.46755 * 179.97438 * 27 25 23 30 30 H 1.48494 * 109.46943 * 299.99723 * 27 25 23 31 31 H 1.08997 * 109.46999 * 297.77129 * 1 2 3 32 32 H 1.09001 * 109.46821 * 57.77078 * 1 2 3 33 33 H 1.08999 * 109.47035 * 177.76809 * 1 2 3 34 34 H 1.08993 * 110.40633 * 23.78204 * 4 2 1 35 35 H 1.08999 * 110.40448 * 146.09512 * 4 2 1 36 36 H 1.07994 * 120.15017 * 0.02562 * 9 8 6 37 37 H 1.08004 * 120.89848 * 180.24724 * 10 9 8 38 38 H 1.07999 * 120.93638 * 359.95484 * 12 11 10 39 39 H 1.08003 * 120.07652 * 179.97438 * 13 12 11 40 40 H 1.08007 * 119.07769 * 179.97438 * 14 13 12 41 41 H 1.08995 * 110.41211 * 280.79650 * 18 5 4 42 42 H 1.09005 * 110.40284 * 158.36653 * 18 5 4 43 43 H 1.08997 * 109.46949 * 64.99779 * 21 19 2 44 44 H 1.09003 * 109.47110 * 305.00271 * 21 19 2 45 45 H 0.97000 * 119.99833 * 359.97438 * 22 21 19 46 46 H 0.97008 * 119.99884 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9098 1.0218 0.0000 4 6 2.0668 -0.7721 -1.2245 5 7 2.3140 -2.1438 -0.7226 6 6 2.0774 -3.3105 -1.3545 7 8 2.4061 -4.3593 -0.8367 8 6 1.4158 -3.3141 -2.6823 9 6 1.0632 -4.5380 -3.2673 10 6 0.4490 -4.5531 -4.4877 11 6 0.2011 -3.3230 -5.1220 12 6 -0.4231 -3.2613 -6.3819 13 6 -0.6323 -2.0312 -6.9373 14 6 -0.2288 -0.8841 -6.2550 15 7 0.3520 -0.9458 -5.0823 16 6 0.5864 -2.1182 -4.4803 17 7 1.1787 -2.1658 -3.2861 18 6 2.8803 -1.9421 0.6315 19 6 2.0664 -0.7715 1.2237 20 1 2.7080 -0.1282 1.8258 21 6 0.9062 -1.3040 2.0671 22 7 1.4328 -1.9284 3.2833 23 6 0.5747 -2.4843 4.1942 24 1 -0.4905 -2.4585 4.0182 25 6 1.0741 -3.0810 5.3438 26 7 2.3723 -3.1129 5.5579 27 14 -0.0966 -3.8387 6.5867 28 1 -0.8810 -4.9176 5.9342 29 1 0.6814 -4.4072 7.7168 30 1 -1.0206 -2.7943 7.0971 31 1 -0.3633 0.4788 0.9093 32 1 -0.3633 0.5481 -0.8693 33 1 -0.3633 -1.0269 -0.0400 34 1 1.3224 -0.7870 -2.0205 35 1 2.9939 -0.3229 -1.5805 36 1 1.2721 -5.4648 -2.7538 37 1 0.1653 -5.4848 -4.9543 38 1 -0.7279 -4.1614 -6.8952 39 1 -1.1083 -1.9472 -7.9031 40 1 -0.3999 0.0823 -6.7059 41 1 3.9355 -1.6770 0.5666 42 1 2.7495 -2.8399 1.2357 43 1 0.3479 -2.0426 1.4919 44 1 0.2460 -0.4801 2.3383 45 1 2.3896 -1.9519 3.4411 46 1 2.7212 -3.5296 6.3614 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733546560.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:02 Heat of formation + Delta-G solvation = 70.445331 kcal Electronic energy + Delta-G solvation = -29280.051091 eV Core-core repulsion = 25363.912148 eV Total energy + Delta-G solvation = -3916.138944 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.64097 -40.03492 -38.39922 -37.41703 -34.72532 -34.33445 -32.72674 -31.52886 -31.28528 -31.02195 -28.96356 -26.94327 -25.81229 -25.01728 -24.45150 -23.16184 -22.86735 -21.81577 -20.35093 -19.00991 -18.76729 -17.97895 -17.46490 -16.90094 -16.40984 -16.18475 -15.61620 -15.39039 -15.09669 -14.68710 -14.58228 -14.19461 -14.01957 -13.63884 -13.55578 -13.54078 -13.24299 -12.81146 -12.68057 -12.48125 -12.27274 -12.08543 -11.88386 -11.67174 -11.50265 -11.45033 -10.88882 -10.84569 -10.75932 -10.41256 -10.26129 -10.11345 -10.07989 -9.80519 -9.58269 -9.35530 -9.30568 -9.18186 -8.77010 -8.46671 -6.82250 -5.68074 -2.95986 -0.32366 0.11721 1.46358 2.08654 2.85452 3.06410 3.31337 3.50028 3.53862 3.55189 3.79343 3.97804 4.16670 4.20727 4.32860 4.40300 4.61523 4.66127 4.84520 4.86636 4.90030 5.00103 5.16367 5.23107 5.39193 5.45367 5.54432 5.62926 5.67144 5.71746 5.74627 5.76174 5.86580 6.05899 6.07869 6.17245 6.18777 6.19901 6.23574 6.38749 6.49687 6.58079 6.67668 6.87685 6.91790 7.01306 7.64638 7.70673 7.77365 8.17852 8.51051 9.61849 10.20237 10.54911 11.54935 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.017059 B = 0.002693 C = 0.002568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1640.991812 B =10394.756105 C =10901.576921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.100 4.100 3 H 0.082 0.918 4 C 0.088 3.912 5 N -0.591 5.591 6 C 0.580 3.420 7 O -0.524 6.524 8 C 0.160 3.840 9 C -0.128 4.128 10 C -0.046 4.046 11 C -0.145 4.145 12 C -0.045 4.045 13 C -0.176 4.176 14 C 0.158 3.842 15 N -0.458 5.458 16 C 0.299 3.701 17 N -0.430 5.430 18 C 0.108 3.892 19 C -0.106 4.106 20 H 0.087 0.913 21 C 0.162 3.838 22 N -0.733 5.733 23 C -0.236 4.236 24 H 0.068 0.932 25 C -0.014 4.014 26 N -0.934 5.934 27 Si 0.906 3.094 28 H -0.287 1.287 29 H -0.291 1.291 30 H -0.287 1.287 31 H 0.063 0.937 32 H 0.049 0.951 33 H 0.056 0.944 34 H 0.124 0.876 35 H 0.066 0.934 36 H 0.158 0.842 37 H 0.150 0.850 38 H 0.144 0.856 39 H 0.144 0.856 40 H 0.169 0.831 41 H 0.069 0.931 42 H 0.099 0.901 43 H 0.019 0.981 44 H 0.025 0.975 45 H 0.383 0.617 46 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.433 3.625 -29.954 30.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.120 4.120 3 H 0.100 0.900 4 C -0.035 4.035 5 N -0.323 5.323 6 C 0.366 3.634 7 O -0.399 6.399 8 C 0.003 3.997 9 C -0.149 4.149 10 C -0.073 4.073 11 C -0.150 4.150 12 C -0.071 4.071 13 C -0.196 4.196 14 C -0.019 4.019 15 N -0.167 5.167 16 C 0.061 3.939 17 N -0.142 5.142 18 C -0.013 4.013 19 C -0.126 4.126 20 H 0.106 0.894 21 C 0.035 3.965 22 N -0.377 5.377 23 C -0.368 4.368 24 H 0.086 0.914 25 C -0.210 4.210 26 N -0.583 5.583 27 Si 0.737 3.263 28 H -0.213 1.213 29 H -0.217 1.217 30 H -0.214 1.214 31 H 0.082 0.918 32 H 0.068 0.932 33 H 0.075 0.925 34 H 0.142 0.858 35 H 0.085 0.915 36 H 0.176 0.824 37 H 0.168 0.832 38 H 0.162 0.838 39 H 0.162 0.838 40 H 0.186 0.814 41 H 0.088 0.912 42 H 0.117 0.883 43 H 0.037 0.963 44 H 0.043 0.957 45 H 0.216 0.784 46 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -3.877 4.460 -28.724 29.326 hybrid contribution -0.805 -1.893 -0.073 2.059 sum -4.681 2.567 -28.797 29.288 Atomic orbital electron populations 1.21865 0.94575 1.02089 1.01380 1.22111 0.96641 0.99002 0.94217 0.89962 1.23125 1.02264 0.80118 0.97943 1.48724 1.60247 1.05646 1.17643 1.17355 0.79637 0.83037 0.83383 1.90845 1.52472 1.30593 1.65982 1.21573 0.94680 0.88838 0.94635 1.21883 0.97675 0.99616 0.95686 1.21478 0.94527 0.97272 0.93989 1.19741 1.02226 0.95739 0.97325 1.21510 0.93813 0.99089 0.92715 1.22055 1.02073 0.93344 1.02147 1.23150 0.90361 0.99259 0.89116 1.67644 1.12792 1.26303 1.09958 1.19355 0.95373 0.88011 0.91180 1.67649 1.11679 1.27558 1.07356 1.22579 0.96330 1.00599 0.81819 1.22372 0.98399 0.95971 0.95860 0.89443 1.20802 0.93182 0.94943 0.87557 1.42407 1.06674 1.68806 1.19812 1.19153 0.89827 1.29049 0.98738 0.91422 1.24719 0.95829 1.01798 0.98656 1.69646 1.10525 1.50010 1.28074 0.86280 0.79837 0.79095 0.81065 1.21343 1.21706 1.21353 0.91817 0.93226 0.92517 0.85845 0.91531 0.82400 0.83190 0.83834 0.83814 0.81440 0.91229 0.88284 0.96318 0.95748 0.78369 0.93530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.99 7.92 37.16 0.29 -1.69 16 2 C -0.10 -1.38 3.66 -89.22 -0.33 -1.71 16 3 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 4 C 0.09 1.22 6.11 -2.41 -0.01 1.21 16 5 N -0.59 -9.73 3.32 -170.23 -0.56 -10.29 16 6 C 0.58 10.00 7.90 -12.10 -0.10 9.91 16 7 O -0.52 -10.58 16.59 5.37 0.09 -10.49 16 8 C 0.16 2.27 6.73 -82.96 -0.56 1.71 16 9 C -0.13 -1.45 9.54 -39.44 -0.38 -1.82 16 10 C -0.05 -0.39 9.89 -39.27 -0.39 -0.77 16 11 C -0.15 -1.36 5.75 -106.68 -0.61 -1.97 16 12 C -0.04 -0.26 9.90 -39.23 -0.39 -0.65 16 13 C -0.18 -0.87 10.04 -39.73 -0.40 -1.27 16 14 C 0.16 1.09 11.14 -17.46 -0.19 0.89 16 15 N -0.46 -5.12 10.43 -12.60 -0.13 -5.25 16 16 C 0.30 3.65 7.62 -157.91 -1.20 2.45 16 17 N -0.43 -5.95 6.64 -9.19 -0.06 -6.01 16 18 C 0.11 1.90 6.46 -2.41 -0.02 1.88 16 19 C -0.11 -1.79 3.10 -89.22 -0.28 -2.07 16 20 H 0.09 1.44 8.14 -51.93 -0.42 1.02 16 21 C 0.16 3.42 4.39 -4.04 -0.02 3.40 16 22 N -0.73 -19.21 5.21 -59.91 -0.31 -19.53 16 23 C -0.24 -6.88 9.99 -15.06 -0.15 -7.03 16 24 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 25 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 26 N -0.93 -29.08 13.06 55.49 0.72 -28.35 16 27 Si 0.91 23.23 29.55 -169.99 -5.02 18.20 16 28 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 29 H -0.29 -7.48 7.11 56.52 0.40 -7.07 16 30 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 31 H 0.06 0.91 6.67 -51.93 -0.35 0.56 16 32 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.06 0.90 6.94 -51.93 -0.36 0.54 16 34 H 0.12 1.76 4.81 -51.93 -0.25 1.51 16 35 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 36 H 0.16 1.68 7.61 -52.49 -0.40 1.28 16 37 H 0.15 0.69 8.06 -52.48 -0.42 0.26 16 38 H 0.14 0.39 8.06 -52.49 -0.42 -0.03 16 39 H 0.14 0.23 8.06 -52.48 -0.42 -0.19 16 40 H 0.17 0.57 8.06 -52.48 -0.42 0.15 16 41 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 42 H 0.10 2.12 7.34 -51.93 -0.38 1.73 16 43 H 0.02 0.43 7.09 -51.93 -0.37 0.06 16 44 H 0.02 0.52 6.49 -51.93 -0.34 0.18 16 45 H 0.38 10.45 7.61 -40.82 -0.31 10.14 16 46 H 0.25 7.69 8.31 -40.82 -0.34 7.35 16 LS Contribution 375.38 15.07 5.66 5.66 Total: -1.00 -36.40 375.38 -10.55 -46.94 By element: Atomic # 1 Polarization: 13.29 SS G_CDS: -6.10 Total: 7.19 kcal Atomic # 6 Polarization: 6.75 SS G_CDS: -4.82 Total: 1.93 kcal Atomic # 7 Polarization: -69.09 SS G_CDS: -0.34 Total: -69.43 kcal Atomic # 8 Polarization: -10.58 SS G_CDS: 0.09 Total: -10.49 kcal Atomic # 14 Polarization: 23.23 SS G_CDS: -5.02 Total: 18.20 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -36.40 -10.55 -46.94 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733546560.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.390 kcal (2) G-P(sol) polarization free energy of solvation -36.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.945 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds