Wall clock time and date at job start Sat Apr 11 2020 06:06:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.09004 * 110.38441 * 2 1 4 4 C 1.54386 * 110.34177 * 237.76822 * 2 1 3 5 5 N 1.48145 * 104.61746 * 264.99503 * 4 2 1 6 6 C 1.34771 * 127.83887 * 140.41534 * 5 4 2 7 7 O 1.21494 * 120.00173 * 175.83058 * 6 5 4 8 8 C 1.48354 * 120.00036 * 355.83504 * 6 5 4 9 9 C 1.40164 * 119.20094 * 186.00800 * 8 6 5 10 10 C 1.36630 * 119.70298 * 179.76266 * 9 8 6 11 11 C 1.40597 * 118.20295 * 0.49755 * 10 9 8 12 12 C 1.40738 * 121.36103 * 179.77241 * 11 10 9 13 13 C 1.36588 * 118.12843 * 179.97438 * 12 11 10 14 14 C 1.39429 * 119.84380 * 0.02562 * 13 12 11 15 15 N 1.31014 * 121.84205 * 359.97438 * 14 13 12 16 16 C 1.33861 * 121.42961 * 359.97438 * 15 14 13 17 17 N 1.31887 * 119.19893 * 6.28046 * 8 6 5 18 18 C 1.48152 * 104.32133 * 320.41500 * 5 4 2 19 19 C 1.54283 * 110.34072 * 122.23071 * 2 1 3 20 20 H 1.09000 * 110.34077 * 237.85201 * 19 2 1 21 21 C 1.53002 * 110.34528 * 0.02562 * 19 2 1 22 22 N 1.46503 * 109.47193 * 185.00169 * 21 19 2 23 23 C 1.36936 * 119.99766 * 180.27650 * 22 21 19 24 24 H 1.07998 * 120.00152 * 359.72311 * 23 22 21 25 25 C 1.38813 * 119.99764 * 179.72380 * 23 22 21 26 26 N 1.31615 * 119.99913 * 359.97438 * 25 23 22 27 27 Si 1.86806 * 119.99755 * 179.97438 * 25 23 22 28 28 H 1.48499 * 109.46954 * 59.99852 * 27 25 23 29 29 H 1.48506 * 109.46755 * 179.97438 * 27 25 23 30 30 H 1.48494 * 109.46943 * 299.99723 * 27 25 23 31 31 H 1.08997 * 109.46999 * 297.77129 * 1 2 3 32 32 H 1.09001 * 109.46821 * 57.77078 * 1 2 3 33 33 H 1.08999 * 109.47035 * 177.76809 * 1 2 3 34 34 H 1.08993 * 110.40633 * 23.78204 * 4 2 1 35 35 H 1.08999 * 110.40448 * 146.09512 * 4 2 1 36 36 H 1.07994 * 120.15017 * 0.02562 * 9 8 6 37 37 H 1.08004 * 120.89848 * 180.24724 * 10 9 8 38 38 H 1.07999 * 120.93638 * 359.95484 * 12 11 10 39 39 H 1.08003 * 120.07652 * 179.97438 * 13 12 11 40 40 H 1.08007 * 119.07769 * 179.97438 * 14 13 12 41 41 H 1.08995 * 110.41211 * 280.79650 * 18 5 4 42 42 H 1.09005 * 110.40284 * 158.36653 * 18 5 4 43 43 H 1.08997 * 109.46949 * 64.99779 * 21 19 2 44 44 H 1.09003 * 109.47110 * 305.00271 * 21 19 2 45 45 H 0.97000 * 119.99833 * 359.97438 * 22 21 19 46 46 H 0.97008 * 119.99884 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9098 1.0218 0.0000 4 6 2.0668 -0.7721 -1.2245 5 7 2.3140 -2.1438 -0.7226 6 6 2.0774 -3.3105 -1.3545 7 8 2.4061 -4.3593 -0.8367 8 6 1.4158 -3.3141 -2.6823 9 6 1.0632 -4.5380 -3.2673 10 6 0.4490 -4.5531 -4.4877 11 6 0.2011 -3.3230 -5.1220 12 6 -0.4231 -3.2613 -6.3819 13 6 -0.6323 -2.0312 -6.9373 14 6 -0.2288 -0.8841 -6.2550 15 7 0.3520 -0.9458 -5.0823 16 6 0.5864 -2.1182 -4.4803 17 7 1.1787 -2.1658 -3.2861 18 6 2.8803 -1.9421 0.6315 19 6 2.0664 -0.7715 1.2237 20 1 2.7080 -0.1282 1.8258 21 6 0.9062 -1.3040 2.0671 22 7 1.4328 -1.9284 3.2833 23 6 0.5747 -2.4843 4.1942 24 1 -0.4905 -2.4585 4.0182 25 6 1.0741 -3.0810 5.3438 26 7 2.3723 -3.1129 5.5579 27 14 -0.0966 -3.8387 6.5867 28 1 -0.8810 -4.9176 5.9342 29 1 0.6814 -4.4072 7.7168 30 1 -1.0206 -2.7943 7.0971 31 1 -0.3633 0.4788 0.9093 32 1 -0.3633 0.5481 -0.8693 33 1 -0.3633 -1.0269 -0.0400 34 1 1.3224 -0.7870 -2.0205 35 1 2.9939 -0.3229 -1.5805 36 1 1.2721 -5.4648 -2.7538 37 1 0.1653 -5.4848 -4.9543 38 1 -0.7279 -4.1614 -6.8952 39 1 -1.1083 -1.9472 -7.9031 40 1 -0.3999 0.0823 -6.7059 41 1 3.9355 -1.6770 0.5666 42 1 2.7495 -2.8399 1.2357 43 1 0.3479 -2.0426 1.4919 44 1 0.2460 -0.4801 2.3383 45 1 2.3896 -1.9519 3.4411 46 1 2.7212 -3.5296 6.3614 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733546560.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:01 Heat of formation + Delta-G solvation = 45.992911 kcal Electronic energy + Delta-G solvation = -29281.111428 eV Core-core repulsion = 25363.912148 eV Total energy + Delta-G solvation = -3917.199280 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.40830 -41.22074 -39.52799 -38.43917 -36.44099 -35.24427 -34.22231 -32.87637 -32.23414 -32.03784 -30.51309 -28.28047 -26.86637 -26.45883 -25.33785 -24.65332 -23.73739 -23.25201 -21.40022 -20.33683 -19.71422 -19.25404 -18.74269 -18.10076 -17.56766 -17.31395 -16.78583 -16.58259 -16.26287 -15.79870 -15.51640 -15.44556 -15.31776 -15.17107 -14.86413 -14.47285 -14.38381 -14.02753 -13.96636 -13.68875 -13.45563 -13.18563 -13.09619 -12.89969 -12.87533 -12.77750 -12.71802 -12.22819 -12.15036 -12.01422 -11.84630 -11.69582 -11.46091 -11.30769 -11.10571 -10.90674 -10.13446 -10.02991 -9.90293 -9.73614 -9.00882 -7.96871 -5.25651 -1.03130 -0.56122 0.81977 1.24567 1.42918 1.47331 1.53272 1.69748 2.07839 2.48091 2.53883 3.03740 3.26730 3.35558 3.36605 3.58330 3.60476 3.62729 3.73176 3.81822 3.93435 4.02209 4.15332 4.20374 4.29384 4.37268 4.47127 4.54608 4.57911 4.63919 4.74068 4.75180 4.82569 4.87551 4.91830 4.93346 4.96280 5.12206 5.13956 5.14604 5.22875 5.30149 5.35149 5.45521 5.54792 5.63871 6.13910 6.25406 6.41091 6.83465 7.05379 7.31206 8.06957 8.31215 9.26553 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.017059 B = 0.002693 C = 0.002568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1640.991812 B =10394.756105 C =10901.576921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.090 4.090 3 H 0.116 0.884 4 C 0.093 3.907 5 N -0.595 5.595 6 C 0.571 3.429 7 O -0.571 6.571 8 C 0.132 3.868 9 C -0.150 4.150 10 C -0.022 4.022 11 C -0.154 4.154 12 C -0.042 4.042 13 C -0.161 4.161 14 C 0.162 3.838 15 N -0.503 5.503 16 C 0.270 3.730 17 N -0.449 5.449 18 C 0.110 3.890 19 C -0.098 4.098 20 H 0.097 0.903 21 C 0.168 3.832 22 N -0.744 5.744 23 C -0.248 4.248 24 H 0.070 0.930 25 C -0.075 4.075 26 N -0.968 5.968 27 Si 0.974 3.026 28 H -0.282 1.282 29 H -0.291 1.291 30 H -0.274 1.274 31 H 0.061 0.939 32 H 0.070 0.930 33 H 0.029 0.971 34 H 0.125 0.875 35 H 0.083 0.917 36 H 0.153 0.847 37 H 0.196 0.804 38 H 0.185 0.815 39 H 0.189 0.811 40 H 0.201 0.799 41 H 0.088 0.912 42 H 0.052 0.948 43 H -0.001 1.001 44 H 0.032 0.968 45 H 0.374 0.626 46 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.544 4.668 -33.807 34.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.109 4.109 3 H 0.134 0.866 4 C -0.028 4.028 5 N -0.325 5.325 6 C 0.359 3.641 7 O -0.450 6.450 8 C -0.022 4.022 9 C -0.171 4.171 10 C -0.048 4.048 11 C -0.159 4.159 12 C -0.068 4.068 13 C -0.180 4.180 14 C -0.014 4.014 15 N -0.213 5.213 16 C 0.032 3.968 17 N -0.162 5.162 18 C -0.013 4.013 19 C -0.117 4.117 20 H 0.116 0.884 21 C 0.042 3.958 22 N -0.387 5.387 23 C -0.380 4.380 24 H 0.088 0.912 25 C -0.267 4.267 26 N -0.618 5.618 27 Si 0.803 3.197 28 H -0.208 1.208 29 H -0.217 1.217 30 H -0.200 1.200 31 H 0.080 0.920 32 H 0.089 0.911 33 H 0.048 0.952 34 H 0.142 0.858 35 H 0.101 0.899 36 H 0.171 0.829 37 H 0.213 0.787 38 H 0.202 0.798 39 H 0.206 0.794 40 H 0.218 0.782 41 H 0.106 0.894 42 H 0.070 0.930 43 H 0.017 0.983 44 H 0.050 0.950 45 H 0.206 0.794 46 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -6.016 5.545 -32.610 33.621 hybrid contribution -0.263 -2.121 0.836 2.295 sum -6.279 3.424 -31.774 32.569 Atomic orbital electron populations 1.21804 0.94669 1.00652 1.02258 1.22151 0.96470 1.00136 0.92168 0.86577 1.23238 1.03145 0.78613 0.97844 1.48861 1.59882 1.06693 1.17082 1.18013 0.79052 0.82485 0.84585 1.90785 1.54544 1.32064 1.67643 1.21104 0.97030 0.90395 0.93703 1.21904 0.99584 0.98332 0.97311 1.21933 0.91743 0.98883 0.92220 1.20048 1.02237 0.94848 0.98784 1.22007 0.92427 1.01307 0.91058 1.22563 1.00130 0.92086 1.03210 1.23919 0.88042 1.01744 0.87731 1.67638 1.15212 1.26325 1.12120 1.19618 0.96356 0.89724 0.91127 1.67378 1.12601 1.27468 1.08791 1.22445 0.97740 0.98831 0.82268 1.22279 0.96912 0.95976 0.96566 0.88447 1.20859 0.94690 0.94119 0.86104 1.42604 1.06056 1.69051 1.20955 1.19545 0.90366 1.28760 0.99334 0.91222 1.25586 0.97534 1.02813 1.00801 1.69810 1.12312 1.51163 1.28554 0.85206 0.77840 0.78357 0.78335 1.20849 1.21744 1.19958 0.91990 0.91066 0.95214 0.85802 0.89852 0.82909 0.78738 0.79777 0.79381 0.78245 0.89367 0.92967 0.98347 0.94981 0.79404 0.93918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.79 7.92 71.99 0.57 -3.22 16 2 C -0.09 -2.42 3.66 -9.89 -0.04 -2.45 16 3 H 0.12 2.44 8.14 -2.39 -0.02 2.42 16 4 C 0.09 2.61 6.11 86.53 0.53 3.14 16 5 N -0.59 -20.88 3.32 -810.79 -2.69 -23.57 16 6 C 0.57 21.55 7.90 86.94 0.69 22.24 16 7 O -0.57 -25.59 16.59 -3.70 -0.06 -25.65 16 8 C 0.13 4.03 6.73 42.30 0.28 4.32 16 9 C -0.15 -3.56 9.54 22.36 0.21 -3.34 16 10 C -0.02 -0.32 9.89 22.47 0.22 -0.10 16 11 C -0.15 -2.52 5.75 -21.20 -0.12 -2.64 16 12 C -0.04 -0.29 9.90 22.49 0.22 -0.07 16 13 C -0.16 -0.75 10.04 22.17 0.22 -0.53 16 14 C 0.16 1.65 11.14 85.10 0.95 2.60 16 15 N -0.50 -10.48 10.43 -193.76 -2.02 -12.50 16 16 C 0.27 6.42 7.62 135.12 1.03 7.45 16 17 N -0.45 -12.87 6.64 -182.98 -1.21 -14.09 16 18 C 0.11 4.10 6.46 86.53 0.56 4.66 16 19 C -0.10 -3.38 3.10 -9.89 -0.03 -3.41 16 20 H 0.10 3.20 8.14 -2.39 -0.02 3.18 16 21 C 0.17 7.39 4.39 86.38 0.38 7.77 16 22 N -0.74 -40.74 5.21 -343.44 -1.79 -42.53 16 23 C -0.25 -14.89 9.99 84.03 0.84 -14.05 16 24 H 0.07 4.05 7.83 -2.91 -0.02 4.03 16 25 C -0.08 -4.56 5.50 84.86 0.47 -4.10 16 26 N -0.97 -62.14 13.06 21.65 0.28 -61.85 16 27 Si 0.97 48.67 29.55 68.60 2.03 50.69 16 28 H -0.28 -13.77 7.11 99.48 0.71 -13.06 16 29 H -0.29 -14.47 7.11 99.48 0.71 -13.76 16 30 H -0.27 -13.00 7.11 99.48 0.71 -12.29 16 31 H 0.06 1.72 6.67 -2.39 -0.02 1.71 16 32 H 0.07 1.66 8.14 -2.39 -0.02 1.65 16 33 H 0.03 0.97 6.94 -2.39 -0.02 0.95 16 34 H 0.12 3.60 4.81 -2.39 -0.01 3.59 16 35 H 0.08 2.05 8.14 -2.39 -0.02 2.04 16 36 H 0.15 3.60 7.61 -2.91 -0.02 3.58 16 37 H 0.20 1.01 8.06 -2.91 -0.02 0.99 16 38 H 0.18 -0.21 8.06 -2.91 -0.02 -0.23 16 39 H 0.19 -0.74 8.06 -2.91 -0.02 -0.76 16 40 H 0.20 0.51 8.06 -2.91 -0.02 0.48 16 41 H 0.09 2.91 8.14 -2.39 -0.02 2.89 16 42 H 0.05 2.45 7.34 -2.38 -0.02 2.43 16 43 H 0.00 -0.07 7.09 -2.39 -0.02 -0.08 16 44 H 0.03 1.38 6.49 -2.39 -0.02 1.36 16 45 H 0.37 21.49 7.61 -92.71 -0.71 20.78 16 46 H 0.25 15.63 8.31 -92.70 -0.77 14.86 16 Total: -1.00 -86.36 375.38 1.84 -84.52 By element: Atomic # 1 Polarization: 26.42 SS G_CDS: 0.31 Total: 26.73 kcal Atomic # 6 Polarization: 11.26 SS G_CDS: 6.98 Total: 18.24 kcal Atomic # 7 Polarization: -147.11 SS G_CDS: -7.43 Total: -154.54 kcal Atomic # 8 Polarization: -25.59 SS G_CDS: -0.06 Total: -25.65 kcal Atomic # 14 Polarization: 48.67 SS G_CDS: 2.03 Total: 50.69 kcal Total: -86.36 1.84 -84.52 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733546560.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.517 kcal (2) G-P(sol) polarization free energy of solvation -86.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.524 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds