Wall clock time and date at job start Sat Apr 11 2020 06:06:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08994 * 110.79936 * 2 1 4 4 C 1.54944 * 110.74201 * 236.70668 * 2 1 3 5 5 N 1.48125 * 103.25435 * 279.04097 * 4 2 1 6 6 C 1.34774 * 127.03150 * 140.74170 * 5 4 2 7 7 O 1.21545 * 120.00232 * 354.62576 * 6 5 4 8 8 C 1.47925 * 119.99737 * 174.62906 * 6 5 4 9 9 C 1.38930 * 119.84407 * 184.64670 * 8 6 5 10 10 C 1.40652 * 117.38898 * 179.78941 * 9 8 6 11 11 C 1.40252 * 122.04178 * 180.18065 * 10 9 8 12 12 C 1.36264 * 119.47744 * 180.29940 * 11 10 9 13 13 C 1.39330 * 120.87199 * 0.02562 * 12 11 10 14 14 C 1.36232 * 121.15845 * 359.94250 * 13 12 11 15 15 C 1.40338 * 119.68055 * 0.07777 * 14 13 12 16 16 N 1.33811 * 121.62245 * 179.97438 * 15 14 13 17 17 N 1.28442 * 121.68650 * 180.02562 * 16 15 14 18 18 C 1.47490 * 105.92974 * 320.70662 * 5 4 2 19 19 C 1.54006 * 107.08388 * 25.44806 * 18 5 4 20 20 H 1.08994 * 110.32316 * 239.69810 * 19 18 5 21 21 C 1.53007 * 110.32604 * 117.58756 * 19 18 5 22 22 N 1.46503 * 109.47021 * 66.44864 * 21 19 18 23 23 C 1.36930 * 119.99591 * 180.27329 * 22 21 19 24 24 H 1.08004 * 120.00233 * 359.73185 * 23 22 21 25 25 C 1.38818 * 119.99989 * 179.72675 * 23 22 21 26 26 N 1.31614 * 120.00205 * 180.02562 * 25 23 22 27 27 Si 1.86798 * 119.99606 * 0.02562 * 25 23 22 28 28 H 1.48504 * 109.47027 * 90.00183 * 27 25 23 29 29 H 1.48505 * 109.47222 * 210.00107 * 27 25 23 30 30 H 1.48500 * 109.47660 * 330.00089 * 27 25 23 31 31 H 1.09003 * 109.47319 * 296.71155 * 1 2 3 32 32 H 1.08996 * 109.47148 * 56.71198 * 1 2 3 33 33 H 1.09004 * 109.46909 * 176.71432 * 1 2 3 34 34 H 1.08994 * 110.66387 * 160.59620 * 4 2 1 35 35 H 1.09003 * 110.80040 * 37.54734 * 4 2 1 36 36 H 1.08001 * 121.30795 * 0.02562 * 9 8 6 37 37 H 1.08003 * 120.26253 * 0.31859 * 11 10 9 38 38 H 1.08001 * 119.56594 * 179.97438 * 12 11 10 39 39 H 1.07997 * 119.42270 * 180.02562 * 13 12 11 40 40 H 1.07994 * 120.15956 * 180.02562 * 14 13 12 41 41 H 1.08994 * 109.90964 * 266.08811 * 18 5 4 42 42 H 1.09000 * 110.06929 * 144.89585 * 18 5 4 43 43 H 1.09002 * 109.46665 * 306.45435 * 21 19 18 44 44 H 1.08997 * 109.47097 * 186.45192 * 21 19 18 45 45 H 0.96994 * 119.99679 * 0.02562 * 22 21 19 46 46 H 0.96999 * 120.00021 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9170 1.0189 0.0000 4 6 2.0787 -0.7954 -1.2112 5 7 1.9871 -2.2040 -0.7621 6 6 1.6234 -3.2699 -1.5024 7 8 1.2330 -3.1132 -2.6427 8 6 1.6991 -4.6305 -0.9269 9 6 1.4164 -5.7341 -1.7219 10 6 1.5087 -7.0036 -1.1233 11 6 1.2481 -8.1831 -1.8360 12 6 1.3474 -9.3852 -1.2022 13 6 1.7033 -9.4570 0.1430 14 6 1.9636 -8.3311 0.8643 15 6 1.8717 -7.0739 0.2474 16 7 2.1185 -5.9431 0.9190 17 7 2.0342 -4.7918 0.3558 18 6 2.3763 -2.2014 0.6605 19 6 2.0775 -0.7936 1.2088 20 1 2.9906 -0.3320 1.5845 21 6 1.0252 -0.8671 2.3171 22 7 1.5801 -1.5792 3.4708 23 6 0.8137 -1.7735 4.5888 24 1 -0.1985 -1.3980 4.6216 25 6 1.3375 -2.4533 5.6799 26 7 0.6007 -2.6405 6.7543 27 14 3.0882 -3.1022 5.6233 28 1 4.0176 -2.0648 6.1383 29 1 3.1917 -4.3213 6.4650 30 1 3.4472 -3.4365 4.2217 31 1 -0.3634 0.4619 0.9180 32 1 -0.3633 0.5640 -0.8590 33 1 -0.3633 -1.0260 -0.0589 34 1 3.1145 -0.5226 -1.4131 35 1 1.4603 -0.6321 -2.0938 36 1 1.1403 -5.6221 -2.7600 37 1 0.9714 -8.1389 -2.8790 38 1 1.1467 -10.2944 -1.7495 39 1 1.7754 -10.4223 0.6219 40 1 2.2386 -8.4055 1.9060 41 1 3.4402 -2.4184 0.7547 42 1 1.7961 -2.9440 1.2083 43 1 0.1474 -1.3987 1.9498 44 1 0.7406 0.1419 2.6153 45 1 2.4892 -1.9162 3.4414 46 1 0.9666 -3.1158 7.5166 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733553925.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:09 Heat of formation + Delta-G solvation = 75.449206 kcal Electronic energy + Delta-G solvation = -29562.876954 eV Core-core repulsion = 25646.954994 eV Total energy + Delta-G solvation = -3915.921959 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.61513 -40.11655 -38.29109 -37.79166 -34.70327 -33.94456 -33.00943 -31.85285 -31.26275 -30.71296 -29.22637 -27.26725 -25.57680 -25.25794 -24.96593 -22.99054 -22.68896 -21.63770 -20.25533 -19.35920 -18.90967 -18.31219 -17.36591 -16.86696 -16.56835 -16.24374 -15.60112 -15.31259 -15.01101 -14.77176 -14.58304 -14.23724 -13.95688 -13.91519 -13.61777 -13.12461 -13.10519 -12.76147 -12.61982 -12.52979 -12.41180 -12.36098 -11.96911 -11.82401 -11.73068 -11.29184 -11.13948 -11.01466 -10.82034 -10.50953 -10.46189 -10.24203 -10.04992 -9.93160 -9.81552 -9.67872 -9.49294 -8.81880 -8.77787 -8.56075 -7.12856 -5.67633 -3.02450 -0.34408 0.12979 1.39323 2.13656 2.77512 2.95885 3.47333 3.54356 3.54652 3.63265 3.69202 3.99385 4.12473 4.21659 4.40218 4.54776 4.66050 4.68309 4.70063 4.73160 4.81135 4.96460 5.18014 5.29494 5.32721 5.34664 5.44962 5.50401 5.57635 5.62720 5.65715 5.76959 5.79876 5.85300 5.86340 5.90402 5.93919 6.07898 6.12276 6.18114 6.29340 6.32513 6.40981 6.57024 6.71919 6.85800 7.45303 7.92447 8.08403 8.39878 8.51121 9.31105 10.03764 10.23427 11.50903 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.008260 B = 0.004583 C = 0.003140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3388.870413 B = 6108.617116 C = 8915.105195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.097 4.097 3 H 0.090 0.910 4 C 0.107 3.893 5 N -0.595 5.595 6 C 0.597 3.403 7 O -0.542 6.542 8 C -0.005 4.005 9 C -0.033 4.033 10 C -0.074 4.074 11 C -0.097 4.097 12 C -0.096 4.096 13 C -0.095 4.095 14 C -0.074 4.074 15 C 0.071 3.929 16 N -0.191 5.191 17 N -0.178 5.178 18 C 0.100 3.900 19 C -0.111 4.111 20 H 0.085 0.915 21 C 0.167 3.833 22 N -0.755 5.755 23 C -0.241 4.241 24 H 0.088 0.912 25 C 0.006 3.994 26 N -0.937 5.937 27 Si 0.879 3.121 28 H -0.287 1.287 29 H -0.292 1.292 30 H -0.269 1.269 31 H 0.068 0.932 32 H 0.050 0.950 33 H 0.056 0.944 34 H 0.074 0.926 35 H 0.085 0.915 36 H 0.165 0.835 37 H 0.140 0.860 38 H 0.135 0.865 39 H 0.138 0.862 40 H 0.148 0.852 41 H 0.065 0.935 42 H 0.115 0.885 43 H 0.031 0.969 44 H 0.030 0.970 45 H 0.361 0.639 46 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.852 -9.230 -21.072 23.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.116 4.116 3 H 0.108 0.892 4 C -0.015 4.015 5 N -0.326 5.326 6 C 0.383 3.617 7 O -0.419 6.419 8 C -0.139 4.139 9 C -0.063 4.063 10 C -0.082 4.082 11 C -0.116 4.116 12 C -0.116 4.116 13 C -0.116 4.116 14 C -0.095 4.095 15 C -0.056 4.056 16 N -0.046 5.046 17 N -0.036 5.036 18 C -0.022 4.022 19 C -0.131 4.131 20 H 0.103 0.897 21 C 0.040 3.960 22 N -0.401 5.401 23 C -0.370 4.370 24 H 0.106 0.894 25 C -0.190 4.190 26 N -0.585 5.585 27 Si 0.710 3.290 28 H -0.213 1.213 29 H -0.219 1.219 30 H -0.195 1.195 31 H 0.087 0.913 32 H 0.070 0.930 33 H 0.075 0.925 34 H 0.093 0.907 35 H 0.104 0.896 36 H 0.182 0.818 37 H 0.157 0.843 38 H 0.153 0.847 39 H 0.156 0.844 40 H 0.166 0.834 41 H 0.083 0.917 42 H 0.133 0.867 43 H 0.048 0.952 44 H 0.048 0.952 45 H 0.194 0.806 46 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 3.826 -8.469 -20.244 22.275 hybrid contribution 0.894 -1.248 -1.041 1.854 sum 4.720 -9.717 -21.284 23.869 Atomic orbital electron populations 1.21814 0.94107 1.02214 1.01937 1.22245 0.96853 0.98895 0.93651 0.89184 1.22639 1.01148 0.79541 0.98159 1.48571 1.64360 1.06953 1.12727 1.17011 0.77857 0.82304 0.84557 1.90778 1.48017 1.85273 1.17857 1.22489 1.02739 0.95527 0.93115 1.22513 0.91854 0.90306 1.01630 1.18810 1.00235 0.94767 0.94408 1.21008 0.99415 0.90921 1.00272 1.21123 0.97452 0.98150 0.94873 1.21115 0.97247 0.99018 0.94191 1.20908 0.98041 0.89375 1.01217 1.20545 0.97854 0.95797 0.91420 1.74077 1.08801 0.93562 1.28170 1.73609 1.06100 1.16029 1.07822 1.22643 1.01043 0.99080 0.79435 1.22455 1.00512 0.94412 0.95688 0.89653 1.20760 0.93690 0.95693 0.85832 1.42739 1.14374 1.68478 1.14476 1.19024 0.97283 1.30052 0.90676 0.89400 1.24631 0.97661 1.00558 0.96117 1.69705 1.36231 1.47147 1.05406 0.86590 0.86183 0.78537 0.77725 1.21338 1.21856 1.19508 0.91281 0.93047 0.92502 0.90744 0.89610 0.81763 0.84252 0.84673 0.84398 0.83423 0.91664 0.86712 0.95166 0.95204 0.80604 0.93207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.84 7.99 37.16 0.30 -1.54 16 2 C -0.10 -1.18 3.60 -88.74 -0.32 -1.50 16 3 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 4 C 0.11 1.31 6.56 -2.12 -0.01 1.29 16 5 N -0.60 -8.86 3.19 -170.83 -0.54 -9.40 16 6 C 0.60 9.45 7.86 -12.29 -0.10 9.35 16 7 O -0.54 -9.17 16.55 5.33 0.09 -9.09 16 8 C -0.01 -0.08 6.79 -82.90 -0.56 -0.65 16 9 C -0.03 -0.40 9.51 -38.41 -0.37 -0.77 16 10 C -0.07 -0.85 5.75 -106.80 -0.61 -1.47 16 11 C -0.10 -0.78 9.81 -39.54 -0.39 -1.16 16 12 C -0.10 -0.63 9.96 -39.89 -0.40 -1.03 16 13 C -0.10 -0.70 9.94 -39.90 -0.40 -1.10 16 14 C -0.07 -0.78 10.00 -39.51 -0.40 -1.18 16 15 C 0.07 0.97 6.69 -84.79 -0.57 0.40 16 16 N -0.19 -3.24 11.55 32.24 0.37 -2.87 16 17 N -0.18 -3.07 7.95 33.24 0.26 -2.81 16 18 C 0.10 1.61 5.31 -2.98 -0.02 1.59 16 19 C -0.11 -1.68 3.00 -89.24 -0.27 -1.95 16 20 H 0.09 1.23 8.14 -51.93 -0.42 0.80 16 21 C 0.17 3.23 4.17 -4.04 -0.02 3.21 16 22 N -0.76 -18.13 5.13 -59.90 -0.31 -18.44 16 23 C -0.24 -6.93 10.47 -15.06 -0.16 -7.09 16 24 H 0.09 2.71 8.06 -52.48 -0.42 2.29 16 25 C 0.01 0.17 5.50 -17.43 -0.10 0.08 16 26 N -0.94 -29.98 13.97 55.49 0.78 -29.20 16 27 Si 0.88 22.65 27.74 -169.99 -4.71 17.94 16 28 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 29 H -0.29 -7.63 7.11 56.52 0.40 -7.23 16 30 H -0.27 -6.58 6.52 56.52 0.37 -6.22 16 31 H 0.07 0.91 6.67 -51.93 -0.35 0.57 16 32 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.06 0.84 7.61 -51.93 -0.40 0.44 16 34 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.09 1.04 7.73 -51.93 -0.40 0.64 16 36 H 0.16 1.65 7.70 -52.49 -0.40 1.25 16 37 H 0.14 0.73 8.06 -52.48 -0.42 0.31 16 38 H 0.14 0.48 8.06 -52.49 -0.42 0.05 16 39 H 0.14 0.62 8.06 -52.49 -0.42 0.20 16 40 H 0.15 1.43 8.06 -52.49 -0.42 1.01 16 41 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 42 H 0.11 2.19 5.51 -51.93 -0.29 1.90 16 43 H 0.03 0.62 6.85 -51.93 -0.36 0.26 16 44 H 0.03 0.58 7.55 -51.93 -0.39 0.19 16 45 H 0.36 8.51 5.37 -40.82 -0.22 8.29 16 46 H 0.26 7.87 8.31 -40.82 -0.34 7.53 16 LS Contribution 374.00 15.07 5.64 5.64 Total: -1.00 -35.75 374.00 -9.00 -44.75 By element: Atomic # 1 Polarization: 13.18 SS G_CDS: -6.20 Total: 6.98 kcal Atomic # 6 Polarization: 0.87 SS G_CDS: -4.37 Total: -3.51 kcal Atomic # 7 Polarization: -63.28 SS G_CDS: 0.56 Total: -62.72 kcal Atomic # 8 Polarization: -9.17 SS G_CDS: 0.09 Total: -9.09 kcal Atomic # 14 Polarization: 22.65 SS G_CDS: -4.71 Total: 17.94 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -35.75 -9.00 -44.75 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733553925.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.203 kcal (2) G-P(sol) polarization free energy of solvation -35.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.754 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds