Wall clock time and date at job start Sat Apr 11 2020 06:06:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08994 * 110.79936 * 2 1 4 4 C 1.54944 * 110.74201 * 236.70668 * 2 1 3 5 5 N 1.48125 * 103.25435 * 279.04097 * 4 2 1 6 6 C 1.34774 * 127.03150 * 140.74170 * 5 4 2 7 7 O 1.21545 * 120.00232 * 354.62576 * 6 5 4 8 8 C 1.47925 * 119.99737 * 174.62906 * 6 5 4 9 9 C 1.38930 * 119.84407 * 184.64670 * 8 6 5 10 10 C 1.40652 * 117.38898 * 179.78941 * 9 8 6 11 11 C 1.40252 * 122.04178 * 180.18065 * 10 9 8 12 12 C 1.36264 * 119.47744 * 180.29940 * 11 10 9 13 13 C 1.39330 * 120.87199 * 0.02562 * 12 11 10 14 14 C 1.36232 * 121.15845 * 359.94250 * 13 12 11 15 15 C 1.40338 * 119.68055 * 0.07777 * 14 13 12 16 16 N 1.33811 * 121.62245 * 179.97438 * 15 14 13 17 17 N 1.28442 * 121.68650 * 180.02562 * 16 15 14 18 18 C 1.47490 * 105.92974 * 320.70662 * 5 4 2 19 19 C 1.54006 * 107.08388 * 25.44806 * 18 5 4 20 20 H 1.08994 * 110.32316 * 239.69810 * 19 18 5 21 21 C 1.53007 * 110.32604 * 117.58756 * 19 18 5 22 22 N 1.46503 * 109.47021 * 66.44864 * 21 19 18 23 23 C 1.36930 * 119.99591 * 180.27329 * 22 21 19 24 24 H 1.08004 * 120.00233 * 359.73185 * 23 22 21 25 25 C 1.38818 * 119.99989 * 179.72675 * 23 22 21 26 26 N 1.31614 * 120.00205 * 180.02562 * 25 23 22 27 27 Si 1.86798 * 119.99606 * 0.02562 * 25 23 22 28 28 H 1.48504 * 109.47027 * 90.00183 * 27 25 23 29 29 H 1.48505 * 109.47222 * 210.00107 * 27 25 23 30 30 H 1.48500 * 109.47660 * 330.00089 * 27 25 23 31 31 H 1.09003 * 109.47319 * 296.71155 * 1 2 3 32 32 H 1.08996 * 109.47148 * 56.71198 * 1 2 3 33 33 H 1.09004 * 109.46909 * 176.71432 * 1 2 3 34 34 H 1.08994 * 110.66387 * 160.59620 * 4 2 1 35 35 H 1.09003 * 110.80040 * 37.54734 * 4 2 1 36 36 H 1.08001 * 121.30795 * 0.02562 * 9 8 6 37 37 H 1.08003 * 120.26253 * 0.31859 * 11 10 9 38 38 H 1.08001 * 119.56594 * 179.97438 * 12 11 10 39 39 H 1.07997 * 119.42270 * 180.02562 * 13 12 11 40 40 H 1.07994 * 120.15956 * 180.02562 * 14 13 12 41 41 H 1.08994 * 109.90964 * 266.08811 * 18 5 4 42 42 H 1.09000 * 110.06929 * 144.89585 * 18 5 4 43 43 H 1.09002 * 109.46665 * 306.45435 * 21 19 18 44 44 H 1.08997 * 109.47097 * 186.45192 * 21 19 18 45 45 H 0.96994 * 119.99679 * 0.02562 * 22 21 19 46 46 H 0.96999 * 120.00021 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9170 1.0189 0.0000 4 6 2.0787 -0.7954 -1.2112 5 7 1.9871 -2.2040 -0.7621 6 6 1.6234 -3.2699 -1.5024 7 8 1.2330 -3.1132 -2.6427 8 6 1.6991 -4.6305 -0.9269 9 6 1.4164 -5.7341 -1.7219 10 6 1.5087 -7.0036 -1.1233 11 6 1.2481 -8.1831 -1.8360 12 6 1.3474 -9.3852 -1.2022 13 6 1.7033 -9.4570 0.1430 14 6 1.9636 -8.3311 0.8643 15 6 1.8717 -7.0739 0.2474 16 7 2.1185 -5.9431 0.9190 17 7 2.0342 -4.7918 0.3558 18 6 2.3763 -2.2014 0.6605 19 6 2.0775 -0.7936 1.2088 20 1 2.9906 -0.3320 1.5845 21 6 1.0252 -0.8671 2.3171 22 7 1.5801 -1.5792 3.4708 23 6 0.8137 -1.7735 4.5888 24 1 -0.1985 -1.3980 4.6216 25 6 1.3375 -2.4533 5.6799 26 7 0.6007 -2.6405 6.7543 27 14 3.0882 -3.1022 5.6233 28 1 4.0176 -2.0648 6.1383 29 1 3.1917 -4.3213 6.4650 30 1 3.4472 -3.4365 4.2217 31 1 -0.3634 0.4619 0.9180 32 1 -0.3633 0.5640 -0.8590 33 1 -0.3633 -1.0260 -0.0589 34 1 3.1145 -0.5226 -1.4131 35 1 1.4603 -0.6321 -2.0938 36 1 1.1403 -5.6221 -2.7600 37 1 0.9714 -8.1389 -2.8790 38 1 1.1467 -10.2944 -1.7495 39 1 1.7754 -10.4223 0.6219 40 1 2.2386 -8.4055 1.9060 41 1 3.4402 -2.4184 0.7547 42 1 1.7961 -2.9440 1.2083 43 1 0.1474 -1.3987 1.9498 44 1 0.7406 0.1419 2.6153 45 1 2.4892 -1.9162 3.4414 46 1 0.9666 -3.1158 7.5166 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733553925.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:08 Heat of formation + Delta-G solvation = 51.088372 kcal Electronic energy + Delta-G solvation = -29563.933319 eV Core-core repulsion = 25646.954994 eV Total energy + Delta-G solvation = -3916.978324 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.56799 -41.23045 -39.39544 -38.74255 -36.52443 -34.87533 -34.34005 -33.35056 -32.58267 -31.54187 -30.73299 -28.36345 -26.96090 -26.37712 -25.95053 -24.52378 -23.56380 -23.13643 -21.33615 -20.72885 -19.83318 -19.39741 -19.26774 -17.79897 -17.67977 -17.18949 -16.67281 -16.63346 -16.40325 -15.87841 -15.71098 -15.42940 -15.36899 -15.00146 -14.71813 -14.57597 -14.31234 -14.27916 -13.99116 -13.64804 -13.44348 -13.28024 -13.17388 -13.00171 -12.91924 -12.79074 -12.73118 -12.20668 -12.12576 -11.95849 -11.82706 -11.66442 -11.61884 -11.36965 -11.23076 -10.94944 -10.82520 -10.50358 -9.83974 -9.47420 -9.25554 -8.00954 -5.32973 -1.20207 -0.77771 0.59833 1.17234 1.38707 1.43710 1.51009 1.70259 2.00040 2.50932 2.62321 2.78331 3.13614 3.17742 3.30894 3.39706 3.45681 3.55950 3.69156 3.73120 3.78895 4.01684 4.09051 4.13406 4.25546 4.31060 4.37899 4.46007 4.55227 4.62503 4.63635 4.71012 4.81795 4.84557 4.87342 4.90139 4.97405 5.03256 5.15298 5.18195 5.22062 5.23715 5.28304 5.31948 5.53256 5.67181 5.77276 6.23071 6.26309 6.76875 7.10834 7.36996 7.87436 8.06416 9.20928 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.008260 B = 0.004583 C = 0.003140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3388.870413 B = 6108.617116 C = 8915.105195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.085 4.085 3 H 0.126 0.874 4 C 0.106 3.894 5 N -0.597 5.597 6 C 0.594 3.406 7 O -0.559 6.559 8 C -0.037 4.037 9 C -0.023 4.023 10 C -0.084 4.084 11 C -0.095 4.095 12 C -0.083 4.083 13 C -0.068 4.068 14 C -0.110 4.110 15 C 0.052 3.948 16 N -0.240 5.240 17 N -0.210 5.210 18 C 0.107 3.893 19 C -0.104 4.104 20 H 0.103 0.897 21 C 0.169 3.831 22 N -0.756 5.756 23 C -0.231 4.231 24 H 0.054 0.946 25 C -0.059 4.059 26 N -0.985 5.985 27 Si 0.948 3.052 28 H -0.273 1.273 29 H -0.298 1.298 30 H -0.253 1.253 31 H 0.060 0.940 32 H 0.074 0.926 33 H 0.028 0.972 34 H 0.100 0.900 35 H 0.089 0.911 36 H 0.187 0.813 37 H 0.174 0.826 38 H 0.181 0.819 39 H 0.175 0.825 40 H 0.144 0.856 41 H 0.069 0.931 42 H 0.082 0.918 43 H 0.013 0.987 44 H 0.035 0.965 45 H 0.366 0.634 46 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.293 -10.816 -24.153 26.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.105 4.105 3 H 0.143 0.857 4 C -0.015 4.015 5 N -0.327 5.327 6 C 0.381 3.619 7 O -0.439 6.439 8 C -0.171 4.171 9 C -0.053 4.053 10 C -0.092 4.092 11 C -0.114 4.114 12 C -0.102 4.102 13 C -0.088 4.088 14 C -0.131 4.131 15 C -0.076 4.076 16 N -0.095 5.095 17 N -0.067 5.067 18 C -0.016 4.016 19 C -0.123 4.123 20 H 0.122 0.878 21 C 0.043 3.957 22 N -0.402 5.402 23 C -0.362 4.362 24 H 0.072 0.928 25 C -0.251 4.251 26 N -0.636 5.636 27 Si 0.776 3.224 28 H -0.199 1.199 29 H -0.224 1.224 30 H -0.178 1.178 31 H 0.079 0.921 32 H 0.093 0.907 33 H 0.047 0.953 34 H 0.118 0.882 35 H 0.108 0.892 36 H 0.204 0.796 37 H 0.191 0.809 38 H 0.199 0.801 39 H 0.192 0.808 40 H 0.161 0.839 41 H 0.087 0.913 42 H 0.100 0.900 43 H 0.031 0.969 44 H 0.053 0.947 45 H 0.199 0.801 46 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 5.280 -10.011 -23.358 25.956 hybrid contribution 0.288 -0.953 -0.159 1.008 sum 5.568 -10.965 -23.517 26.538 Atomic orbital electron populations 1.21788 0.94897 1.00689 1.02551 1.22277 0.96098 1.00218 0.91875 0.85655 1.22857 1.02770 0.77826 0.98007 1.48626 1.63908 1.07985 1.12181 1.17157 0.77533 0.82784 0.84433 1.90742 1.49109 1.85656 1.18379 1.22551 1.05075 0.96161 0.93315 1.22806 0.90252 0.90016 1.02181 1.19107 1.00380 0.95895 0.93867 1.21454 0.98367 0.89854 1.01697 1.21694 0.94812 0.99284 0.94422 1.21633 0.93379 0.99249 0.94528 1.21078 1.00763 0.89440 1.01782 1.20955 0.98175 0.95770 0.92709 1.73897 1.11189 0.94614 1.29806 1.73458 1.07622 1.16715 1.08889 1.22426 1.00577 0.98613 0.80002 1.22388 0.99881 0.94774 0.95279 0.87843 1.20863 0.94528 0.94698 0.85629 1.42745 1.14178 1.68830 1.14411 1.19009 0.96321 1.28677 0.92164 0.92799 1.25419 1.02260 1.01559 0.95824 1.69880 1.38494 1.48803 1.06387 0.85491 0.80883 0.77693 0.78380 1.19918 1.22439 1.17807 0.92133 0.90726 0.95322 0.88207 0.89236 0.79590 0.80906 0.80143 0.80751 0.83850 0.91306 0.89987 0.96876 0.94715 0.80111 0.93427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.54 7.99 71.98 0.57 -2.97 16 2 C -0.09 -1.90 3.60 -9.58 -0.03 -1.94 16 3 H 0.13 2.02 8.14 -2.39 -0.02 2.00 16 4 C 0.11 2.38 6.56 86.73 0.57 2.95 16 5 N -0.60 -17.77 3.19 -812.67 -2.59 -20.36 16 6 C 0.59 19.23 7.86 86.81 0.68 19.92 16 7 O -0.56 -18.96 16.55 -3.86 -0.06 -19.03 16 8 C -0.04 -1.18 6.79 41.62 0.28 -0.90 16 9 C -0.02 -0.56 9.51 23.03 0.22 -0.34 16 10 C -0.08 -1.88 5.75 -21.28 -0.12 -2.00 16 11 C -0.10 -1.18 9.81 22.30 0.22 -0.96 16 12 C -0.08 -0.69 9.96 22.07 0.22 -0.47 16 13 C -0.07 -0.76 9.94 22.07 0.22 -0.54 16 14 C -0.11 -2.26 10.00 22.31 0.22 -2.03 16 15 C 0.05 1.45 6.69 40.28 0.27 1.72 16 16 N -0.24 -8.74 11.55 -51.92 -0.60 -9.34 16 17 N -0.21 -7.75 7.95 -48.75 -0.39 -8.13 16 18 C 0.11 3.47 5.31 86.53 0.46 3.93 16 19 C -0.10 -3.05 3.00 -9.90 -0.03 -3.08 16 20 H 0.10 2.72 8.14 -2.39 -0.02 2.70 16 21 C 0.17 6.63 4.17 86.38 0.36 6.99 16 22 N -0.76 -37.00 5.13 -343.43 -1.76 -38.76 16 23 C -0.23 -13.80 10.47 84.04 0.88 -12.92 16 24 H 0.05 3.52 8.06 -2.91 -0.02 3.50 16 25 C -0.06 -3.65 5.50 84.86 0.47 -3.18 16 26 N -0.98 -65.36 13.97 21.65 0.30 -65.06 16 27 Si 0.95 47.93 27.74 68.60 1.90 49.83 16 28 H -0.27 -13.17 7.11 99.48 0.71 -12.46 16 29 H -0.30 -15.23 7.11 99.48 0.71 -14.52 16 30 H -0.25 -12.00 6.52 99.48 0.65 -11.35 16 31 H 0.06 1.59 6.67 -2.39 -0.02 1.58 16 32 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 33 H 0.03 0.86 7.61 -2.39 -0.02 0.84 16 34 H 0.10 1.78 8.14 -2.39 -0.02 1.76 16 35 H 0.09 1.99 7.73 -2.39 -0.02 1.97 16 36 H 0.19 3.54 7.70 -2.91 -0.02 3.51 16 37 H 0.17 0.97 8.06 -2.91 -0.02 0.94 16 38 H 0.18 -0.01 8.06 -2.91 -0.02 -0.03 16 39 H 0.18 0.70 8.06 -2.91 -0.02 0.68 16 40 H 0.14 2.91 8.06 -2.91 -0.02 2.89 16 41 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 42 H 0.08 3.30 5.51 -2.39 -0.01 3.28 16 43 H 0.01 0.57 6.85 -2.39 -0.02 0.55 16 44 H 0.03 1.35 7.55 -2.39 -0.02 1.33 16 45 H 0.37 17.22 5.37 -92.71 -0.50 16.72 16 46 H 0.26 16.23 8.31 -92.71 -0.77 15.46 16 Total: -1.00 -84.42 374.00 2.72 -81.71 By element: Atomic # 1 Polarization: 24.51 SS G_CDS: 0.46 Total: 24.97 kcal Atomic # 6 Polarization: -1.28 SS G_CDS: 5.46 Total: 4.18 kcal Atomic # 7 Polarization: -136.62 SS G_CDS: -5.04 Total: -141.66 kcal Atomic # 8 Polarization: -18.96 SS G_CDS: -0.06 Total: -19.03 kcal Atomic # 14 Polarization: 47.93 SS G_CDS: 1.90 Total: 49.83 kcal Total: -84.42 2.72 -81.71 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733553925.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.794 kcal (2) G-P(sol) polarization free energy of solvation -84.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.705 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds