Wall clock time and date at job start Sat Apr 11 2020 06:06:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.46839 * 2 1 4 4 C 1.52995 * 109.46939 * 239.99882 * 2 1 3 5 5 C 1.53002 * 109.47042 * 174.99557 * 4 2 1 6 6 C 1.53002 * 109.46864 * 180.02562 * 5 4 2 7 7 N 1.46900 * 109.46731 * 180.02562 * 6 5 4 8 8 C 1.46900 * 111.00048 * 179.97438 * 7 6 5 9 9 C 1.50696 * 109.47377 * 179.97438 * 8 7 6 10 10 O 1.21295 * 119.99990 * 0.02562 * 9 8 7 11 11 N 1.34777 * 120.00218 * 180.02562 * 9 8 7 12 12 C 1.37095 * 120.00063 * 180.02562 * 11 9 8 13 13 H 1.07996 * 120.00379 * 359.97438 * 12 11 9 14 14 C 1.38956 * 119.99859 * 180.02562 * 12 11 9 15 15 N 1.31409 * 119.99824 * 179.97438 * 14 12 11 16 16 Si 1.86802 * 119.99879 * 359.97438 * 14 12 11 17 17 H 1.48500 * 109.46839 * 90.00815 * 16 14 12 18 18 H 1.48506 * 109.46793 * 210.00424 * 16 14 12 19 19 H 1.48495 * 109.47246 * 330.00573 * 16 14 12 20 20 N 1.46500 * 109.47270 * 119.99651 * 2 1 3 21 21 C 1.34773 * 120.00431 * 275.00299 * 20 2 1 22 22 O 1.21703 * 119.99823 * 359.97438 * 21 20 2 23 23 C 1.46660 * 120.00151 * 179.72488 * 21 20 2 24 24 C 1.37927 * 126.21666 * 180.27229 * 23 21 20 25 25 C 1.39915 * 107.11025 * 179.97438 * 24 23 21 26 26 F 1.35102 * 126.07759 * 179.97438 * 25 24 23 27 27 C 1.35570 * 107.84712 * 0.02562 * 25 24 23 28 28 N 1.35753 * 108.82782 * 359.72669 * 27 25 24 29 29 H 0.96999 * 125.67882 * 180.29206 * 28 27 25 30 30 H 1.09002 * 109.47065 * 299.99910 * 1 2 3 31 31 H 1.08995 * 109.47392 * 59.99682 * 1 2 3 32 32 H 1.08998 * 109.47432 * 180.02562 * 1 2 3 33 33 H 1.08994 * 109.47294 * 295.00243 * 4 2 1 34 34 H 1.09002 * 109.47282 * 55.00064 * 4 2 1 35 35 H 1.09002 * 109.47273 * 299.99960 * 5 4 2 36 36 H 1.08994 * 109.46714 * 60.00396 * 5 4 2 37 37 H 1.09002 * 109.46980 * 299.99940 * 6 5 4 38 38 H 1.08994 * 109.47294 * 60.00552 * 6 5 4 39 39 H 1.00900 * 110.99971 * 303.95426 * 7 6 5 40 40 H 1.09000 * 109.47421 * 300.00241 * 8 7 6 41 41 H 1.09005 * 109.46882 * 59.99775 * 8 7 6 42 42 H 0.97002 * 119.99552 * 359.97438 * 11 9 8 43 43 H 0.96994 * 119.99851 * 179.97438 * 15 14 12 44 44 H 0.97000 * 119.99456 * 94.99861 * 20 2 1 45 45 H 1.08008 * 126.43998 * 0.02562 * 24 23 21 46 46 H 1.08000 * 125.58930 * 180.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5648 -0.6132 -1.3137 6 6 4.0746 -1.3340 -2.5633 7 7 5.5387 -1.2307 -2.6249 8 6 6.0651 -1.9136 -3.8144 9 6 7.5663 -1.7861 -3.8437 10 8 8.1414 -1.1859 -2.9603 11 7 8.2701 -2.3390 -4.8514 12 6 9.6359 -2.2235 -4.8778 13 1 10.1479 -1.6891 -4.0913 14 6 10.3614 -2.7931 -5.9171 15 7 11.6705 -2.6819 -5.9426 16 14 9.4756 -3.7168 -7.2779 17 1 9.1259 -2.7734 -8.3701 18 1 10.3614 -4.7835 -7.8098 19 1 8.2356 -4.3278 -6.7355 20 7 2.0184 -0.6905 1.1962 21 6 2.1471 -0.0182 2.3571 22 8 1.8580 1.1627 2.4117 23 6 2.6303 -0.7110 3.5561 24 6 2.8048 -0.1528 4.8052 25 6 3.2785 -1.1656 5.6462 26 9 3.5790 -1.0357 6.9570 27 6 3.3833 -2.3004 4.9119 28 7 2.9864 -2.0376 3.6405 29 1 2.9602 -2.6779 2.9123 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3634 -1.0276 0.0005 33 1 1.7516 -1.7714 -1.2056 34 1 1.6053 -0.2618 -2.1370 35 1 3.8531 0.4371 -1.3575 36 1 3.9994 -1.0727 -0.4261 37 1 3.7863 -2.3843 -2.5200 38 1 3.6400 -0.8741 -3.4508 39 1 5.8346 -0.2664 -2.6006 40 1 5.7902 -2.9677 -3.7796 41 1 5.6445 -1.4578 -4.7108 42 1 7.8102 -2.8193 -5.5576 43 1 12.1769 -3.0798 -6.6679 44 1 2.2490 -1.6317 1.1526 45 1 2.6113 0.8731 5.0821 46 1 3.7220 -3.2578 5.2793 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734245059.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:14 Heat of formation + Delta-G solvation = -78.219968 kcal Electronic energy + Delta-G solvation = -27953.371191 eV Core-core repulsion = 23600.016411 eV Total energy + Delta-G solvation = -4353.354779 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.170 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -48.84734 -41.75127 -39.76094 -38.54558 -37.22728 -35.67264 -33.98235 -32.88787 -31.70566 -31.32573 -30.94613 -29.30853 -27.55158 -25.28669 -24.04360 -23.24379 -21.74413 -21.49251 -20.94100 -20.77341 -19.53489 -19.39600 -18.35449 -16.90171 -16.54857 -16.25960 -16.13624 -15.82129 -15.78803 -15.34409 -15.09715 -14.99958 -14.64820 -14.47162 -14.25286 -14.03185 -13.89941 -13.82098 -13.48921 -13.32084 -13.12523 -12.85354 -12.60732 -12.30775 -12.10346 -12.08276 -11.85510 -11.59610 -11.49050 -11.22629 -11.07943 -10.90891 -10.62766 -10.51693 -10.00412 -9.61001 -9.60440 -9.37001 -8.73942 -8.63260 -8.23564 -8.17981 -6.33824 -3.85408 0.87928 1.99805 2.42219 2.60420 2.90984 2.99324 3.03555 3.12065 3.70509 3.92402 4.05154 4.07378 4.35132 4.45973 4.52079 4.61231 4.64859 4.82277 4.85736 4.95631 5.08552 5.13028 5.16742 5.20186 5.23972 5.37424 5.44342 5.51502 5.52660 5.57752 5.61519 5.76798 5.80649 5.87923 5.88796 5.94669 6.05989 6.08818 6.38009 6.68432 7.01012 7.05553 7.52049 7.55539 7.71809 8.11632 8.56804 8.92100 9.39372 9.79520 10.79291 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.012840 B = 0.001793 C = 0.001628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2180.083784 B =15616.065703 C =17199.375357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.143 3.857 3 H 0.094 0.906 4 C -0.126 4.126 5 C -0.118 4.118 6 C 0.059 3.941 7 N -0.671 5.671 8 C 0.048 3.952 9 C 0.449 3.551 10 O -0.565 6.565 11 N -0.590 5.590 12 C -0.306 4.306 13 H 0.120 0.880 14 C 0.041 3.959 15 N -0.881 5.881 16 Si 0.880 3.120 17 H -0.271 1.271 18 H -0.276 1.276 19 H -0.270 1.270 20 N -0.722 5.722 21 C 0.592 3.408 22 O -0.522 6.522 23 C -0.028 4.028 24 C -0.128 4.128 25 C 0.002 3.998 26 F -0.126 7.126 27 C 0.005 3.995 28 N -0.526 5.526 29 H 0.426 0.574 30 H 0.061 0.939 31 H 0.068 0.932 32 H 0.056 0.944 33 H 0.069 0.931 34 H 0.081 0.919 35 H 0.065 0.935 36 H 0.071 0.929 37 H 0.069 0.931 38 H 0.027 0.973 39 H 0.351 0.649 40 H 0.086 0.914 41 H 0.044 0.956 42 H 0.370 0.630 43 H 0.274 0.726 44 H 0.395 0.605 45 H 0.160 0.840 46 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.371 -1.647 13.807 29.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.039 3.961 3 H 0.112 0.888 4 C -0.164 4.164 5 C -0.156 4.156 6 C -0.070 4.070 7 N -0.304 5.304 8 C -0.084 4.084 9 C 0.234 3.766 10 O -0.446 6.446 11 N -0.230 5.230 12 C -0.434 4.434 13 H 0.137 0.863 14 C -0.162 4.162 15 N -0.521 5.521 16 Si 0.707 3.293 17 H -0.196 1.196 18 H -0.201 1.201 19 H -0.195 1.195 20 N -0.373 5.373 21 C 0.379 3.621 22 O -0.397 6.397 23 C -0.142 4.142 24 C -0.156 4.156 25 C -0.023 4.023 26 F -0.105 7.105 27 C -0.132 4.132 28 N -0.124 5.124 29 H 0.265 0.735 30 H 0.081 0.919 31 H 0.087 0.913 32 H 0.075 0.925 33 H 0.088 0.912 34 H 0.100 0.900 35 H 0.084 0.916 36 H 0.090 0.910 37 H 0.087 0.913 38 H 0.045 0.955 39 H 0.170 0.830 40 H 0.104 0.896 41 H 0.062 0.938 42 H 0.203 0.797 43 H 0.084 0.916 44 H 0.228 0.772 45 H 0.178 0.822 46 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -25.879 -1.019 14.609 29.735 hybrid contribution -0.517 -1.104 -1.996 2.339 sum -26.395 -2.122 12.614 29.331 Atomic orbital electron populations 1.22186 0.94977 1.02192 1.02877 1.21058 0.93974 0.97876 0.83179 0.88827 1.21889 0.96315 1.01092 0.97133 1.21571 0.93925 1.01327 0.98809 1.21974 0.88209 1.00441 0.96426 1.60059 1.08133 1.21712 1.40465 1.21698 0.94793 1.00215 0.91735 1.19725 0.88046 0.84669 0.84142 1.90570 1.71032 1.45031 1.38000 1.42210 1.07890 1.50097 1.22794 1.19436 0.79574 1.33854 1.10566 0.86280 1.25052 0.95456 0.97842 0.97875 1.69620 1.05068 1.44491 1.32874 0.86661 0.79640 0.80392 0.82619 1.19647 1.20141 1.19520 1.45956 1.67845 1.13698 1.09851 1.16903 0.77494 0.86228 0.81504 1.90875 1.49960 1.14586 1.84305 1.20286 1.13399 0.84208 0.96351 1.21341 1.03458 1.00261 0.90499 1.16485 1.11036 0.94860 0.79921 1.91467 1.91952 1.96275 1.30808 1.21820 1.06881 1.00299 0.84232 1.41717 1.50496 1.09556 1.10584 0.73522 0.91940 0.91291 0.92466 0.91209 0.89994 0.91624 0.91002 0.91281 0.95529 0.82957 0.89584 0.93807 0.79704 0.91588 0.77158 0.82211 0.79857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.98 9.48 37.16 0.35 -0.63 16 2 C 0.14 0.96 2.57 -67.93 -0.17 0.78 16 3 H 0.09 0.82 7.58 -51.93 -0.39 0.43 16 4 C -0.13 -0.71 4.75 -26.73 -0.13 -0.84 16 5 C -0.12 -0.99 5.36 -26.73 -0.14 -1.13 16 6 C 0.06 0.60 5.69 -3.82 -0.02 0.57 16 7 N -0.67 -9.90 6.13 -115.06 -0.70 -10.60 16 8 C 0.05 0.78 6.17 -4.98 -0.03 0.75 16 9 C 0.45 10.09 7.82 -10.99 -0.09 10.01 16 10 O -0.56 -15.15 15.78 5.54 0.09 -15.06 16 11 N -0.59 -13.95 5.09 -10.96 -0.06 -14.00 16 12 C -0.31 -8.62 10.16 -14.93 -0.15 -8.77 16 13 H 0.12 3.85 7.39 -52.49 -0.39 3.46 16 14 C 0.04 1.11 5.50 -17.47 -0.10 1.02 16 15 N -0.88 -25.63 13.96 55.50 0.77 -24.85 16 16 Si 0.88 19.13 27.74 -169.99 -4.71 14.42 16 17 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 18 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 19 H -0.27 -5.32 6.52 56.52 0.37 -4.95 16 20 N -0.72 -4.71 4.53 -55.12 -0.25 -4.96 16 21 C 0.59 5.64 7.75 -12.86 -0.10 5.54 16 22 O -0.52 -6.90 16.54 5.19 0.09 -6.81 16 23 C -0.03 -0.24 7.05 -81.98 -0.58 -0.82 16 24 C -0.13 -1.24 10.66 -39.07 -0.42 -1.65 16 25 C 0.00 0.02 7.98 -39.91 -0.32 -0.30 16 26 F -0.13 -1.29 17.32 2.25 0.04 -1.25 16 27 C 0.00 0.03 11.90 -16.77 -0.20 -0.17 16 28 N -0.53 -2.82 6.00 -9.31 -0.06 -2.87 16 29 H 0.43 0.88 8.19 -40.82 -0.33 0.55 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 33 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.07 0.65 7.75 -51.93 -0.40 0.25 16 37 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.03 0.25 8.14 -51.93 -0.42 -0.17 16 39 H 0.35 5.49 8.43 -39.29 -0.33 5.16 16 40 H 0.09 1.23 8.14 -51.93 -0.42 0.80 16 41 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.37 7.62 5.76 -40.82 -0.24 7.39 16 43 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 44 H 0.39 1.55 7.73 -40.82 -0.32 1.23 16 45 H 0.16 1.51 8.06 -52.48 -0.42 1.09 16 46 H 0.18 0.54 8.06 -52.49 -0.42 0.12 16 LS Contribution 395.33 15.07 5.96 5.96 Total: -1.00 -36.39 395.33 -7.57 -43.96 By element: Atomic # 1 Polarization: 18.36 SS G_CDS: -6.64 Total: 11.72 kcal Atomic # 6 Polarization: 6.45 SS G_CDS: -2.09 Total: 4.36 kcal Atomic # 7 Polarization: -56.99 SS G_CDS: -0.29 Total: -57.28 kcal Atomic # 8 Polarization: -22.05 SS G_CDS: 0.17 Total: -21.88 kcal Atomic # 9 Polarization: -1.29 SS G_CDS: 0.04 Total: -1.25 kcal Atomic # 14 Polarization: 19.13 SS G_CDS: -4.71 Total: 14.42 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -36.39 -7.57 -43.96 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734245059.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.260 kcal (2) G-P(sol) polarization free energy of solvation -36.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.960 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds