Wall clock time and date at job start Sat Apr 11 2020 06:06:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.46839 * 2 1 4 4 C 1.52995 * 109.46939 * 239.99882 * 2 1 3 5 5 C 1.53002 * 109.47042 * 174.99557 * 4 2 1 6 6 C 1.53002 * 109.46864 * 180.02562 * 5 4 2 7 7 N 1.46900 * 109.46731 * 180.02562 * 6 5 4 8 8 C 1.46900 * 111.00048 * 179.97438 * 7 6 5 9 9 C 1.50696 * 109.47377 * 179.97438 * 8 7 6 10 10 O 1.21295 * 119.99990 * 0.02562 * 9 8 7 11 11 N 1.34777 * 120.00218 * 180.02562 * 9 8 7 12 12 C 1.37095 * 120.00063 * 180.02562 * 11 9 8 13 13 H 1.07996 * 120.00379 * 359.97438 * 12 11 9 14 14 C 1.38956 * 119.99859 * 180.02562 * 12 11 9 15 15 N 1.31409 * 119.99824 * 179.97438 * 14 12 11 16 16 Si 1.86802 * 119.99879 * 359.97438 * 14 12 11 17 17 H 1.48500 * 109.46839 * 90.00815 * 16 14 12 18 18 H 1.48506 * 109.46793 * 210.00424 * 16 14 12 19 19 H 1.48495 * 109.47246 * 330.00573 * 16 14 12 20 20 N 1.46500 * 109.47270 * 119.99651 * 2 1 3 21 21 C 1.34773 * 120.00431 * 275.00299 * 20 2 1 22 22 O 1.21703 * 119.99823 * 359.97438 * 21 20 2 23 23 C 1.46660 * 120.00151 * 179.72488 * 21 20 2 24 24 C 1.37927 * 126.21666 * 180.27229 * 23 21 20 25 25 C 1.39915 * 107.11025 * 179.97438 * 24 23 21 26 26 F 1.35102 * 126.07759 * 179.97438 * 25 24 23 27 27 C 1.35570 * 107.84712 * 0.02562 * 25 24 23 28 28 N 1.35753 * 108.82782 * 359.72669 * 27 25 24 29 29 H 0.96999 * 125.67882 * 180.29206 * 28 27 25 30 30 H 1.09002 * 109.47065 * 299.99910 * 1 2 3 31 31 H 1.08995 * 109.47392 * 59.99682 * 1 2 3 32 32 H 1.08998 * 109.47432 * 180.02562 * 1 2 3 33 33 H 1.08994 * 109.47294 * 295.00243 * 4 2 1 34 34 H 1.09002 * 109.47282 * 55.00064 * 4 2 1 35 35 H 1.09002 * 109.47273 * 299.99960 * 5 4 2 36 36 H 1.08994 * 109.46714 * 60.00396 * 5 4 2 37 37 H 1.09002 * 109.46980 * 299.99940 * 6 5 4 38 38 H 1.08994 * 109.47294 * 60.00552 * 6 5 4 39 39 H 1.00900 * 110.99971 * 303.95426 * 7 6 5 40 40 H 1.09000 * 109.47421 * 300.00241 * 8 7 6 41 41 H 1.09005 * 109.46882 * 59.99775 * 8 7 6 42 42 H 0.97002 * 119.99552 * 359.97438 * 11 9 8 43 43 H 0.96994 * 119.99851 * 179.97438 * 15 14 12 44 44 H 0.97000 * 119.99456 * 94.99861 * 20 2 1 45 45 H 1.08008 * 126.43998 * 0.02562 * 24 23 21 46 46 H 1.08000 * 125.58930 * 180.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5648 -0.6132 -1.3137 6 6 4.0746 -1.3340 -2.5633 7 7 5.5387 -1.2307 -2.6249 8 6 6.0651 -1.9136 -3.8144 9 6 7.5663 -1.7861 -3.8437 10 8 8.1414 -1.1859 -2.9603 11 7 8.2701 -2.3390 -4.8514 12 6 9.6359 -2.2235 -4.8778 13 1 10.1479 -1.6891 -4.0913 14 6 10.3614 -2.7931 -5.9171 15 7 11.6705 -2.6819 -5.9426 16 14 9.4756 -3.7168 -7.2779 17 1 9.1259 -2.7734 -8.3701 18 1 10.3614 -4.7835 -7.8098 19 1 8.2356 -4.3278 -6.7355 20 7 2.0184 -0.6905 1.1962 21 6 2.1471 -0.0182 2.3571 22 8 1.8580 1.1627 2.4117 23 6 2.6303 -0.7110 3.5561 24 6 2.8048 -0.1528 4.8052 25 6 3.2785 -1.1656 5.6462 26 9 3.5790 -1.0357 6.9570 27 6 3.3833 -2.3004 4.9119 28 7 2.9864 -2.0376 3.6405 29 1 2.9602 -2.6779 2.9123 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3634 -1.0276 0.0005 33 1 1.7516 -1.7714 -1.2056 34 1 1.6053 -0.2618 -2.1370 35 1 3.8531 0.4371 -1.3575 36 1 3.9994 -1.0727 -0.4261 37 1 3.7863 -2.3843 -2.5200 38 1 3.6400 -0.8741 -3.4508 39 1 5.8346 -0.2664 -2.6006 40 1 5.7902 -2.9677 -3.7796 41 1 5.6445 -1.4578 -4.7108 42 1 7.8102 -2.8193 -5.5576 43 1 12.1769 -3.0798 -6.6679 44 1 2.2490 -1.6317 1.1526 45 1 2.6113 0.8731 5.0821 46 1 3.7220 -3.2578 5.2793 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734245059.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:13 Heat of formation + Delta-G solvation = -108.101287 kcal Electronic energy + Delta-G solvation = -27954.666942 eV Core-core repulsion = 23600.016411 eV Total energy + Delta-G solvation = -4354.650531 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.170 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.55662 -42.36462 -40.45550 -40.28900 -38.02806 -36.69987 -35.90591 -33.81871 -33.60973 -31.99104 -31.67046 -29.91091 -28.77159 -26.61336 -25.04516 -24.27452 -22.45745 -22.12231 -21.56231 -21.42267 -21.26927 -20.25615 -20.11539 -17.80682 -17.56147 -17.15388 -17.09766 -16.81564 -16.69425 -16.49419 -16.05808 -15.82942 -15.78118 -15.57008 -15.21374 -14.98506 -14.80372 -14.62563 -14.52825 -14.38308 -14.22466 -14.14073 -13.86981 -13.34136 -13.13201 -12.98595 -12.77233 -12.74076 -12.42101 -12.31481 -12.12730 -11.98132 -11.78605 -11.54928 -11.51370 -11.28815 -10.45141 -10.27112 -10.26016 -10.01046 -9.33638 -9.30511 -8.41901 -6.03302 0.23132 1.29998 1.35833 1.36110 1.45093 1.88289 1.94954 2.04274 2.19220 2.23012 2.73351 3.14435 3.38303 3.45056 3.74527 3.87521 4.04517 4.05116 4.13629 4.17304 4.23760 4.31308 4.41935 4.49220 4.50219 4.58028 4.64811 4.72720 4.82495 4.85482 4.88034 4.93392 5.06462 5.23645 5.30190 5.34152 5.41704 5.50906 5.52581 5.70309 5.90871 6.09095 6.26009 6.38246 6.46694 6.59119 6.87344 7.06419 7.38919 7.95972 8.75819 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.012840 B = 0.001793 C = 0.001628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2180.083784 B =15616.065703 C =17199.375357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.142 3.858 3 H 0.067 0.933 4 C -0.112 4.112 5 C -0.114 4.114 6 C 0.062 3.938 7 N -0.693 5.693 8 C 0.063 3.937 9 C 0.445 3.555 10 O -0.617 6.617 11 N -0.590 5.590 12 C -0.330 4.330 13 H 0.053 0.947 14 C -0.018 4.018 15 N -0.935 5.935 16 Si 0.968 3.032 17 H -0.257 1.257 18 H -0.275 1.275 19 H -0.229 1.229 20 N -0.706 5.706 21 C 0.590 3.410 22 O -0.569 6.569 23 C -0.040 4.040 24 C -0.152 4.152 25 C -0.033 4.033 26 F -0.138 7.138 27 C 0.036 3.964 28 N -0.505 5.505 29 H 0.444 0.556 30 H 0.038 0.962 31 H 0.080 0.920 32 H 0.074 0.926 33 H 0.095 0.905 34 H 0.095 0.905 35 H 0.047 0.953 36 H 0.062 0.938 37 H 0.088 0.912 38 H 0.042 0.958 39 H 0.340 0.660 40 H 0.116 0.884 41 H 0.077 0.923 42 H 0.390 0.610 43 H 0.279 0.721 44 H 0.410 0.590 45 H 0.146 0.854 46 H 0.224 0.776 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.620 -5.080 11.453 32.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.038 3.962 3 H 0.085 0.915 4 C -0.150 4.150 5 C -0.153 4.153 6 C -0.067 4.067 7 N -0.325 5.325 8 C -0.069 4.069 9 C 0.233 3.767 10 O -0.502 6.502 11 N -0.232 5.232 12 C -0.460 4.460 13 H 0.071 0.929 14 C -0.216 4.216 15 N -0.575 5.575 16 Si 0.787 3.213 17 H -0.182 1.182 18 H -0.201 1.201 19 H -0.152 1.152 20 N -0.357 5.357 21 C 0.377 3.623 22 O -0.448 6.448 23 C -0.154 4.154 24 C -0.180 4.180 25 C -0.058 4.058 26 F -0.118 7.118 27 C -0.103 4.103 28 N -0.104 5.104 29 H 0.287 0.713 30 H 0.057 0.943 31 H 0.099 0.901 32 H 0.093 0.907 33 H 0.113 0.887 34 H 0.113 0.887 35 H 0.066 0.934 36 H 0.081 0.919 37 H 0.106 0.894 38 H 0.060 0.940 39 H 0.158 0.842 40 H 0.134 0.866 41 H 0.094 0.906 42 H 0.226 0.774 43 H 0.089 0.911 44 H 0.247 0.753 45 H 0.164 0.836 46 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -29.171 -4.504 12.222 31.947 hybrid contribution 0.556 0.029 -1.142 1.271 sum -28.615 -4.476 11.079 31.010 Atomic orbital electron populations 1.22128 0.94032 1.03125 1.02334 1.21075 0.94643 0.96861 0.83658 0.91511 1.21799 0.93986 1.02512 0.96677 1.21523 0.95837 0.99981 0.97919 1.22088 0.85160 1.01901 0.97523 1.60098 1.11248 1.21025 1.40162 1.21629 0.89011 1.02522 0.93749 1.21110 0.91019 0.82167 0.82376 1.90549 1.73049 1.46754 1.39847 1.42032 1.06112 1.51000 1.24050 1.19001 0.82028 1.34953 1.09979 0.92890 1.26179 0.96233 0.98363 1.00844 1.69810 1.07562 1.45772 1.34391 0.85329 0.79484 0.78597 0.77861 1.18152 1.20053 1.15176 1.45844 1.66617 1.14312 1.08952 1.17067 0.77044 0.85754 0.82394 1.90848 1.52248 1.16647 1.85095 1.20035 1.14329 0.85523 0.95542 1.21430 1.04511 1.00346 0.91710 1.16760 1.13242 0.96011 0.79821 1.91424 1.92254 1.96439 1.31634 1.22360 1.03804 1.00574 0.83536 1.41692 1.48963 1.08623 1.11090 0.71306 0.94266 0.90125 0.90693 0.88694 0.88662 0.93409 0.91917 0.89403 0.93960 0.84167 0.86576 0.90569 0.77381 0.91127 0.75305 0.83572 0.75950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.61 9.48 71.98 0.68 -0.93 16 2 C 0.14 1.69 2.57 44.99 0.12 1.81 16 3 H 0.07 1.20 7.58 -2.39 -0.02 1.18 16 4 C -0.11 -0.87 4.75 30.59 0.15 -0.73 16 5 C -0.11 -1.64 5.36 30.60 0.16 -1.48 16 6 C 0.06 1.00 5.69 86.30 0.49 1.49 16 7 N -0.69 -18.80 6.13 -517.93 -3.17 -21.97 16 8 C 0.06 1.80 6.17 85.56 0.53 2.33 16 9 C 0.45 19.74 7.82 87.66 0.69 20.43 16 10 O -0.62 -34.25 15.78 -3.08 -0.05 -34.29 16 11 N -0.59 -27.35 5.09 -306.98 -1.56 -28.91 16 12 C -0.33 -19.28 10.16 84.04 0.85 -18.43 16 13 H 0.05 3.71 7.39 -2.91 -0.02 3.69 16 14 C -0.02 -0.97 5.50 84.93 0.47 -0.51 16 15 N -0.93 -56.18 13.96 21.66 0.30 -55.87 16 16 Si 0.97 37.91 27.74 68.60 1.90 39.82 16 17 H -0.26 -9.53 7.11 99.48 0.71 -8.82 16 18 H -0.28 -10.75 7.11 99.48 0.71 -10.04 16 19 H -0.23 -7.39 6.52 99.48 0.65 -6.74 16 20 N -0.71 -8.28 4.53 -446.52 -2.02 -10.30 16 21 C 0.59 11.46 7.75 86.44 0.67 12.13 16 22 O -0.57 -16.12 16.54 -4.36 -0.07 -16.19 16 23 C -0.04 -0.67 7.05 40.36 0.28 -0.39 16 24 C -0.15 -3.13 10.66 22.60 0.24 -2.89 16 25 C -0.03 -0.60 7.98 22.06 0.18 -0.43 16 26 F -0.14 -2.91 17.32 44.97 0.78 -2.13 16 27 C 0.04 0.36 11.90 83.47 0.99 1.35 16 28 N -0.51 -4.32 6.00 -183.37 -1.10 -5.42 16 29 H 0.44 0.36 8.19 -92.71 -0.76 -0.40 16 30 H 0.04 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 32 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 33 H 0.09 0.34 8.14 -2.39 -0.02 0.32 16 34 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16 35 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 36 H 0.06 1.01 7.75 -2.39 -0.02 0.99 16 37 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 38 H 0.04 0.59 8.14 -2.39 -0.02 0.57 16 39 H 0.34 10.40 8.43 -89.69 -0.76 9.64 16 40 H 0.12 2.68 8.14 -2.39 -0.02 2.66 16 41 H 0.08 1.74 8.14 -2.38 -0.02 1.72 16 42 H 0.39 14.72 5.76 -92.71 -0.53 14.18 16 43 H 0.28 15.29 8.31 -92.71 -0.77 14.52 16 44 H 0.41 2.09 7.73 -92.71 -0.72 1.37 16 45 H 0.15 3.22 8.06 -2.91 -0.02 3.19 16 46 H 0.22 0.40 8.06 -2.91 -0.02 0.37 16 Total: -1.00 -88.62 395.33 -0.27 -88.89 By element: Atomic # 1 Polarization: 34.41 SS G_CDS: -1.77 Total: 32.63 kcal Atomic # 6 Polarization: 7.26 SS G_CDS: 6.50 Total: 13.76 kcal Atomic # 7 Polarization: -114.93 SS G_CDS: -7.55 Total: -122.48 kcal Atomic # 8 Polarization: -50.36 SS G_CDS: -0.12 Total: -50.48 kcal Atomic # 9 Polarization: -2.91 SS G_CDS: 0.78 Total: -2.13 kcal Atomic # 14 Polarization: 37.91 SS G_CDS: 1.90 Total: 39.82 kcal Total: -88.62 -0.27 -88.89 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734245059.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.214 kcal (2) G-P(sol) polarization free energy of solvation -88.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds