Wall clock time and date at job start Sat Apr 11 2020 06:06:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 110.30702 * 2 1 4 4 C 1.54385 * 110.34316 * 237.70971 * 2 1 3 5 5 N 1.48150 * 104.61712 * 217.26159 * 4 2 1 6 6 C 1.34781 * 127.83716 * 219.60336 * 5 4 2 7 7 O 1.21529 * 119.99882 * 174.71283 * 6 5 4 8 8 C 1.48009 * 119.99956 * 354.71692 * 6 5 4 9 9 C 1.38885 * 121.16534 * 322.90375 * 8 6 5 10 10 C 1.39352 * 119.67042 * 179.77627 * 9 8 6 11 11 N 1.31108 * 121.89937 * 0.51837 * 10 9 8 12 12 C 1.33282 * 121.61449 * 359.74013 * 11 10 9 13 13 C 1.40839 * 121.90752 * 179.97438 * 12 11 10 14 14 C 1.36169 * 118.76857 * 180.02562 * 13 12 11 15 15 N 1.32541 * 121.95865 * 359.97438 * 14 13 12 16 16 C 1.31339 * 122.60436 * 0.02562 * 15 14 13 17 17 C 1.40088 * 119.87728 * 359.97438 * 16 15 14 18 18 C 1.48145 * 104.32277 * 39.58819 * 5 4 2 19 19 C 1.54287 * 110.34251 * 122.17492 * 2 1 3 20 20 H 1.08998 * 110.34122 * 237.74183 * 19 2 1 21 21 C 1.53002 * 110.34197 * 359.97438 * 19 2 1 22 22 N 1.46501 * 109.46903 * 184.99983 * 21 19 2 23 23 C 1.36941 * 119.99691 * 180.02562 * 22 21 19 24 24 H 1.08002 * 119.99896 * 359.97438 * 23 22 21 25 25 C 1.38815 * 120.00072 * 180.02562 * 23 22 21 26 26 N 1.31617 * 119.99555 * 359.97438 * 25 23 22 27 27 Si 1.86796 * 120.00164 * 179.97438 * 25 23 22 28 28 H 1.48500 * 109.46949 * 0.02562 * 27 25 23 29 29 H 1.48501 * 109.46999 * 120.00166 * 27 25 23 30 30 H 1.48497 * 109.47359 * 240.00145 * 27 25 23 31 31 H 1.09000 * 109.47557 * 297.82408 * 1 2 3 32 32 H 1.09004 * 109.47120 * 177.82476 * 1 2 3 33 33 H 1.08999 * 109.47365 * 57.82779 * 1 2 3 34 34 H 1.08995 * 110.41185 * 336.04833 * 4 2 1 35 35 H 1.09005 * 110.40629 * 98.48101 * 4 2 1 36 36 H 1.08000 * 120.16903 * 0.02562 * 9 8 6 37 37 H 1.08001 * 119.05496 * 180.23341 * 10 9 8 38 38 H 1.07994 * 120.61804 * 0.04443 * 13 12 11 39 39 H 1.07997 * 119.02026 * 180.02562 * 14 13 12 40 40 H 1.07999 * 120.05800 * 179.97438 * 16 15 14 41 41 H 1.08997 * 110.40616 * 201.62582 * 18 5 4 42 42 H 1.09004 * 110.50584 * 79.25092 * 18 5 4 43 43 H 1.08991 * 109.47551 * 305.00136 * 21 19 2 44 44 H 1.09007 * 109.46852 * 65.00729 * 21 19 2 45 45 H 0.96998 * 120.00161 * 0.02562 * 22 21 19 46 46 H 0.97002 * 119.99688 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9083 1.0222 0.0000 4 6 2.0667 -0.7733 -1.2237 5 7 3.2664 -1.4824 -0.7211 6 6 4.4426 -1.6675 -1.3527 7 8 5.3704 -2.1913 -0.7681 8 6 4.6043 -1.2326 -2.7582 9 6 3.5655 -1.3539 -3.6721 10 6 3.7503 -0.9301 -4.9867 11 7 4.8877 -0.4239 -5.3980 12 6 5.9276 -0.2833 -4.5764 13 6 7.1523 0.2592 -5.0118 14 6 8.1732 0.3732 -4.1180 15 7 8.0464 -0.0099 -2.8555 16 6 6.9352 -0.5237 -2.3801 17 6 5.8251 -0.6834 -3.2195 18 6 2.8801 -1.9416 0.6334 19 6 2.0663 -0.7703 1.2245 20 1 2.7095 -0.1270 1.8249 21 6 0.9061 -1.3009 2.0691 22 7 1.4329 -1.9242 3.2858 23 6 0.5744 -2.4738 4.2003 24 1 -0.4909 -2.4474 4.0247 25 6 1.0735 -3.0638 5.3534 26 7 2.3717 -3.0955 5.5675 27 14 -0.0975 -3.8129 6.6012 28 1 -1.4957 -3.6488 6.1286 29 1 0.2050 -5.2582 6.7585 30 1 0.0673 -3.1276 7.9083 31 1 -0.3634 0.4797 0.9088 32 1 -0.3633 -1.0270 -0.0390 33 1 -0.3634 0.5472 -0.8698 34 1 1.3235 -1.4876 -1.5778 35 1 2.3401 -0.0815 -2.0205 36 1 2.6179 -1.7708 -3.3645 37 1 2.9347 -1.0255 -5.6881 38 1 7.2792 0.5790 -6.0355 39 1 9.1139 0.7890 -4.4474 40 1 6.8774 -0.8226 -1.3439 41 1 3.7672 -2.1313 1.2377 42 1 2.2646 -2.8390 0.5713 43 1 0.2467 -0.4764 2.3395 44 1 0.3471 -2.0400 1.4950 45 1 2.3896 -1.9475 3.4435 46 1 2.7204 -3.5075 6.3734 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754816507.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:16 Heat of formation + Delta-G solvation = 56.818431 kcal Electronic energy + Delta-G solvation = -28951.439985 eV Core-core repulsion = 25034.710134 eV Total energy + Delta-G solvation = -3916.729850 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.75086 -40.16005 -38.40373 -38.17521 -34.82949 -33.97756 -33.03551 -31.94306 -31.26139 -30.89593 -29.09703 -27.08059 -25.80794 -25.12305 -24.57229 -23.83607 -22.85254 -22.13414 -20.14496 -19.08399 -18.95279 -18.09241 -17.50198 -16.95584 -16.71601 -16.00241 -15.77422 -15.42164 -15.06854 -14.96459 -14.77030 -14.65555 -14.47927 -13.96019 -13.72628 -13.61009 -13.26822 -13.15118 -12.98055 -12.50632 -12.41932 -12.22222 -12.09682 -12.02901 -11.84900 -11.06935 -11.00842 -10.90176 -10.67018 -10.55000 -10.51536 -10.25973 -10.08401 -9.96868 -9.75196 -9.72328 -9.67011 -8.94279 -8.89272 -8.84814 -6.95462 -5.78874 -3.08401 -0.39666 0.26261 1.20384 2.39419 2.55619 2.74928 3.41632 3.46825 3.49567 3.67383 3.69097 3.89059 4.05147 4.15261 4.27772 4.29959 4.44265 4.54708 4.68010 4.75037 4.78418 4.87985 5.01968 5.17953 5.20548 5.26360 5.30605 5.37372 5.49030 5.50348 5.52497 5.55810 5.68267 5.68619 5.81662 5.92865 5.99732 6.01792 6.06233 6.22358 6.23092 6.31982 6.40646 6.67927 6.76879 7.28468 7.30447 7.59000 7.67347 7.81661 8.39355 9.50678 10.07615 10.41397 11.43751 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.019238 B = 0.002447 C = 0.002261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1455.066113 B =11438.723300 C =12379.717637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.098 4.098 3 H 0.079 0.921 4 C 0.097 3.903 5 N -0.610 5.610 6 C 0.573 3.427 7 O -0.520 6.520 8 C -0.032 4.032 9 C -0.150 4.150 10 C 0.152 3.848 11 N -0.466 5.466 12 C 0.156 3.844 13 C -0.149 4.149 14 C 0.095 3.905 15 N -0.485 5.485 16 C 0.171 3.829 17 C -0.135 4.135 18 C 0.115 3.885 19 C -0.106 4.106 20 H 0.083 0.917 21 C 0.162 3.838 22 N -0.734 5.734 23 C -0.241 4.241 24 H 0.071 0.929 25 C -0.013 4.013 26 N -0.931 5.931 27 Si 0.906 3.094 28 H -0.280 1.280 29 H -0.291 1.291 30 H -0.292 1.292 31 H 0.069 0.931 32 H 0.065 0.935 33 H 0.051 0.949 34 H 0.080 0.920 35 H 0.078 0.922 36 H 0.151 0.849 37 H 0.172 0.828 38 H 0.148 0.852 39 H 0.162 0.838 40 H 0.181 0.819 41 H 0.089 0.911 42 H 0.083 0.917 43 H 0.028 0.972 44 H 0.023 0.977 45 H 0.384 0.616 46 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.128 8.406 -24.646 26.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.118 4.118 3 H 0.098 0.902 4 C -0.026 4.026 5 N -0.343 5.343 6 C 0.361 3.639 7 O -0.397 6.397 8 C -0.045 4.045 9 C -0.170 4.170 10 C -0.022 4.022 11 N -0.174 5.174 12 C 0.030 3.970 13 C -0.169 4.169 14 C -0.049 4.049 15 N -0.193 5.193 16 C -0.001 4.001 17 C -0.140 4.140 18 C -0.006 4.006 19 C -0.125 4.125 20 H 0.101 0.899 21 C 0.035 3.965 22 N -0.379 5.379 23 C -0.372 4.372 24 H 0.089 0.911 25 C -0.209 4.209 26 N -0.579 5.579 27 Si 0.737 3.263 28 H -0.206 1.206 29 H -0.219 1.219 30 H -0.219 1.219 31 H 0.088 0.912 32 H 0.084 0.916 33 H 0.070 0.930 34 H 0.098 0.902 35 H 0.096 0.904 36 H 0.169 0.831 37 H 0.189 0.811 38 H 0.166 0.834 39 H 0.179 0.821 40 H 0.198 0.802 41 H 0.108 0.892 42 H 0.101 0.899 43 H 0.046 0.954 44 H 0.041 0.959 45 H 0.217 0.783 46 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 3.600 8.509 -24.713 26.384 hybrid contribution -1.223 -0.856 1.017 1.807 sum 2.377 7.653 -23.696 25.014 Atomic orbital electron populations 1.21906 0.93642 1.02740 1.02090 1.22065 0.96749 0.99224 0.93751 0.90246 1.22772 0.86665 0.95673 0.97441 1.48939 1.12209 1.54573 1.18570 1.17604 0.81678 0.79696 0.84961 1.90826 1.38534 1.43765 1.66547 1.20346 0.93323 0.96347 0.94507 1.22619 0.99629 1.00285 0.94476 1.23148 0.94693 0.90670 0.93698 1.67870 0.99619 1.13503 1.36440 1.18880 0.93888 0.95662 0.88600 1.21724 0.91599 1.01446 1.02134 1.22419 0.98860 0.95248 0.88419 1.67682 1.25802 1.10255 1.15527 1.23730 0.86106 0.89540 1.00683 1.19602 0.95842 1.02554 0.95987 1.22573 1.00026 0.97310 0.80669 1.22355 0.98255 0.96202 0.95713 0.89875 1.20849 0.92787 0.95158 0.87720 1.42428 1.06773 1.69038 1.19647 1.19230 0.89873 1.29562 0.98581 0.91137 1.24756 0.95838 1.01716 0.98601 1.69668 1.10559 1.49866 1.27803 0.86137 0.79878 0.78726 0.81540 1.20575 1.21863 1.21866 0.91187 0.91644 0.93036 0.90174 0.90405 0.83122 0.81109 0.83416 0.82094 0.80225 0.89235 0.89853 0.95441 0.95899 0.78287 0.93487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 7.94 37.16 0.29 -1.09 16 2 C -0.10 -1.03 3.66 -89.22 -0.33 -1.35 16 3 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 4 C 0.10 0.89 4.86 -2.41 -0.01 0.87 16 5 N -0.61 -7.63 3.31 -170.36 -0.56 -8.19 16 6 C 0.57 7.87 7.32 -12.25 -0.09 7.78 16 7 O -0.52 -8.94 14.99 5.34 0.08 -8.86 16 8 C -0.03 -0.36 5.48 -104.37 -0.57 -0.93 16 9 C -0.15 -1.21 8.06 -38.93 -0.31 -1.52 16 10 C 0.15 1.13 11.14 -17.45 -0.19 0.94 16 11 N -0.47 -4.71 10.33 -10.95 -0.11 -4.82 16 12 C 0.16 1.74 6.63 -84.88 -0.56 1.18 16 13 C -0.15 -1.40 10.08 -39.34 -0.40 -1.79 16 14 C 0.09 0.91 11.06 -17.99 -0.20 0.71 16 15 N -0.48 -6.06 10.31 -13.24 -0.14 -6.20 16 16 C 0.17 2.24 10.45 -17.07 -0.18 2.06 16 17 C -0.14 -1.65 5.76 -106.55 -0.61 -2.26 16 18 C 0.12 1.72 6.43 -2.41 -0.02 1.71 16 19 C -0.11 -1.52 3.10 -89.22 -0.28 -1.80 16 20 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 21 C 0.16 2.91 4.40 -4.04 -0.02 2.89 16 22 N -0.73 -17.64 5.48 -59.90 -0.33 -17.97 16 23 C -0.24 -6.53 9.99 -15.06 -0.15 -6.68 16 24 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 25 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 26 N -0.93 -27.90 13.06 55.49 0.72 -27.17 16 27 Si 0.91 22.09 29.55 -169.99 -5.02 17.06 16 28 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 29 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 30 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 31 H 0.07 0.74 6.67 -51.93 -0.35 0.40 16 32 H 0.06 0.65 6.90 -51.93 -0.36 0.29 16 33 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 34 H 0.08 0.60 7.66 -51.93 -0.40 0.21 16 35 H 0.08 0.58 6.52 -51.93 -0.34 0.24 16 36 H 0.15 0.87 6.53 -52.49 -0.34 0.53 16 37 H 0.17 0.62 8.06 -52.49 -0.42 0.19 16 38 H 0.15 1.03 8.06 -52.49 -0.42 0.60 16 39 H 0.16 1.01 8.06 -52.49 -0.42 0.58 16 40 H 0.18 2.51 5.95 -52.49 -0.31 2.20 16 41 H 0.09 1.56 7.85 -51.93 -0.41 1.15 16 42 H 0.08 1.29 7.75 -51.93 -0.40 0.89 16 43 H 0.03 0.50 6.49 -51.93 -0.34 0.16 16 44 H 0.02 0.41 6.94 -51.93 -0.36 0.05 16 45 H 0.38 9.85 7.61 -40.82 -0.31 9.54 16 46 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 371.80 15.07 5.60 5.60 Total: -1.00 -33.79 371.80 -9.47 -43.26 By element: Atomic # 1 Polarization: 13.04 SS G_CDS: -6.00 Total: 7.04 kcal Atomic # 6 Polarization: 3.96 SS G_CDS: -3.72 Total: 0.25 kcal Atomic # 7 Polarization: -63.94 SS G_CDS: -0.42 Total: -64.35 kcal Atomic # 8 Polarization: -8.94 SS G_CDS: 0.08 Total: -8.86 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -33.79 -9.47 -43.26 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754816507.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.080 kcal (2) G-P(sol) polarization free energy of solvation -33.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.262 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds